BLASTX nr result
ID: Coptis21_contig00023224
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis21_contig00023224 (303 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_003545312.1| PREDICTED: glutamate receptor 3.2-like [Glyc... 77 1e-12 ref|XP_002310140.1| glutamate-gated kainate-type ion channel rec... 77 1e-12 ref|XP_003541827.1| PREDICTED: glutamate receptor 2.8-like [Glyc... 74 1e-11 ref|XP_002300411.1| glutamate-gated kainate-type ion channel rec... 71 1e-10 ref|XP_002327147.1| glutamate-gated kainate-type ion channel rec... 71 1e-10 >ref|XP_003545312.1| PREDICTED: glutamate receptor 3.2-like [Glycine max] Length = 865 Score = 77.0 bits (188), Expect = 1e-12 Identities = 43/103 (41%), Positives = 63/103 (61%), Gaps = 3/103 (2%) Frame = +3 Query: 3 YDTLSTLAFALEKSSNRTTLLENILSSNFSGLSGQIKFTNGELSRSTTYEVVNVLGKKYI 182 YD + T+ AL+KS +L ENIL SN GLSG+I F + L T+++VNV+GK Y Sbjct: 344 YDAVWTITHALKKSQGNFSLSENILHSNHEGLSGKISFKDKMLLEPPTFKIVNVIGKGYK 403 Query: 183 VLKSWSAEYGFSDNVIDKMV---QVKNTVGAVMQVLGNRVYWP 302 L +WS GFS+N+++ MV + + G+ +LG+ V WP Sbjct: 404 ELANWSPGSGFSENLVENMVVNTRRTSRAGSARVLLGS-VDWP 445 >ref|XP_002310140.1| glutamate-gated kainate-type ion channel receptor subunit GluR5 [Populus trichocarpa] gi|222853043|gb|EEE90590.1| glutamate-gated kainate-type ion channel receptor subunit GluR5 [Populus trichocarpa] Length = 760 Score = 77.0 bits (188), Expect = 1e-12 Identities = 45/107 (42%), Positives = 64/107 (59%), Gaps = 7/107 (6%) Frame = +3 Query: 3 YDTLSTLAFA---LEKSSNRTTLLENILSSNFSGLSGQIKFTNGELSRSTTYEVVNVLGK 173 YD + T+A + L + + TLL++ILSS+F GLSG+I FTN +L+ +++VN++GK Sbjct: 331 YDAIWTVAKSSKMLHEKNYSKTLLQHILSSDFEGLSGRIHFTNYKLTYGPNFQIVNIVGK 390 Query: 174 KYIVLKSWSAEYGFSDNVIDKMVQVKNTVGAVMQVLG----NRVYWP 302 Y L WS E+GF+DN+ VKN G G N VYWP Sbjct: 391 SYRELGFWSPEFGFTDNL------VKNNSGKDRSQSGEEVLNPVYWP 431 >ref|XP_003541827.1| PREDICTED: glutamate receptor 2.8-like [Glycine max] Length = 891 Score = 73.9 bits (180), Expect = 1e-11 Identities = 43/102 (42%), Positives = 64/102 (62%), Gaps = 2/102 (1%) Frame = +3 Query: 3 YDTLSTLAFALEKSSNR--TTLLENILSSNFSGLSGQIKFTNGELSRSTTYEVVNVLGKK 176 YD TLA A+ ++ N+ LL+NIL +NF+GLSG+I+FT+ +L S T+++ NV+GK Sbjct: 344 YDAAWTLALAMTQTDNKGGQILLDNILLNNFTGLSGKIQFTDQKLDPSNTFQITNVIGKG 403 Query: 177 YIVLKSWSAEYGFSDNVIDKMVQVKNTVGAVMQVLGNRVYWP 302 Y + WS GFS+N+ Q T + M+ LG +V WP Sbjct: 404 YKEVGFWSDGLGFSNNI----GQNATTFNSSMKELG-QVLWP 440 >ref|XP_002300411.1| glutamate-gated kainate-type ion channel receptor subunit GluR5 [Populus trichocarpa] gi|222847669|gb|EEE85216.1| glutamate-gated kainate-type ion channel receptor subunit GluR5 [Populus trichocarpa] Length = 829 Score = 70.9 bits (172), Expect = 1e-10 Identities = 38/103 (36%), Positives = 59/103 (57%), Gaps = 3/103 (2%) Frame = +3 Query: 3 YDTLSTLAFALEKSSNRT---TLLENILSSNFSGLSGQIKFTNGELSRSTTYEVVNVLGK 173 YD + T+A L K+ ++ LLENIL ++F GLSG++KF N ++ + +E+VNV+G Sbjct: 325 YDAMRTIALGLIKTGSKRGGKELLENILDADFHGLSGKVKFKNQNVAAAEIFEIVNVIGT 384 Query: 174 KYIVLKSWSAEYGFSDNVIDKMVQVKNTVGAVMQVLGNRVYWP 302 Y L WS GFS+N+ + + +G +VYWP Sbjct: 385 GYNELGYWSNGLGFSENIHENSSYNTSMIGL------GQVYWP 421 >ref|XP_002327147.1| glutamate-gated kainate-type ion channel receptor subunit GluR5 [Populus trichocarpa] gi|222835462|gb|EEE73897.1| glutamate-gated kainate-type ion channel receptor subunit GluR5 [Populus trichocarpa] Length = 765 Score = 70.9 bits (172), Expect = 1e-10 Identities = 41/103 (39%), Positives = 61/103 (59%), Gaps = 3/103 (2%) Frame = +3 Query: 3 YDTLSTLAFALEKSSNRTTLLE---NILSSNFSGLSGQIKFTNGELSRSTTYEVVNVLGK 173 YD +A A+EKS + T E NILSSNF GLSG ++F N L +S +++++NV+G Sbjct: 231 YDATWAIARAMEKSQGKITSKELSGNILSSNFEGLSGTVRFENNVLWQSPSFQIINVVGN 290 Query: 174 KYIVLKSWSAEYGFSDNVIDKMVQVKNTVGAVMQVLGNRVYWP 302 Y V+ WS ++GFS + + T + ++ LG VYWP Sbjct: 291 SYRVMAVWSPKFGFSQS---EEKYNGATANSSLKNLG-PVYWP 329