BLASTX nr result
ID: Coptis21_contig00023162
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00023162
(950 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002276057.1| PREDICTED: probable RNA polymerase II transc... 116 1e-35
dbj|BAK05807.1| predicted protein [Hordeum vulgare subsp. vulgare] 105 1e-30
dbj|BAK04994.1| predicted protein [Hordeum vulgare subsp. vulgare] 106 2e-30
gb|EEC83408.1| hypothetical protein OsI_28861 [Oryza sativa Indi... 110 4e-30
ref|NP_001061583.1| Os08g0338200 [Oryza sativa Japonica Group] g... 110 4e-30
>ref|XP_002276057.1| PREDICTED: probable RNA polymerase II transcription factor B
subunit 1-1 [Vitis vinifera]
gi|296090002|emb|CBI39821.3| unnamed protein product
[Vitis vinifera]
Length = 602
Score = 116 bits (291), Expect(4) = 1e-35
Identities = 54/83 (65%), Positives = 68/83 (81%)
Frame = +2
Query: 374 SESEFWVTRKELVSTNASKVLKQRVGFKSAMITDINPATNGRSNKVTFNLTPEIIDQIFA 553
+E+EFW TRK+L+ N S+ KQRVGFKSAMI+D+ P T+GR+N+VTFNLTPEII QIFA
Sbjct: 155 TEAEFWATRKKLLDGNTSRTSKQRVGFKSAMISDLKPLTDGRTNRVTFNLTPEIIHQIFA 214
Query: 554 GKLAVHKAYLKFVPYKFSEVEFW 622
K AVH+A+L FVP K +E +FW
Sbjct: 215 EKPAVHQAFLNFVPNKMTEKDFW 237
Score = 41.2 bits (95), Expect(4) = 1e-35
Identities = 20/56 (35%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Frame = +2
Query: 17 TILDLGVKGMLIMMEDRIIFTPNNPT-SVKLTIGLESVQKHLFNVKRNHKEALLTM 181
++ D GV G+L M ED+ +F PN+PT S + + ++ H F+ ++K ALL +
Sbjct: 14 SVKDSGVAGVLKMTEDKFVFMPNDPTSSARFDVEFRFIKGHKFSKGGSNKPALLNL 69
Score = 31.6 bits (70), Expect(4) = 1e-35
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +1
Query: 172 SNNGGCCIF*FENFSEHDVCCEFMNKFLTNKLQSKKS 282
S GG IF FEN+ + +VC EF+ + L ++ K+
Sbjct: 73 SEKGGGYIFEFENYPDREVCREFVGRALAKFSEASKA 109
Score = 28.1 bits (61), Expect(4) = 1e-35
Identities = 15/31 (48%), Positives = 19/31 (61%)
Frame = +3
Query: 276 EIMSEGSQPVSEIFSDEQLSTAEMDFRMKLL 368
E GS+ + DEQLST EM+ R+KLL
Sbjct: 105 EASKAGSEQSAVKLFDEQLSTIEMERRIKLL 135
>dbj|BAK05807.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 600
Score = 105 bits (262), Expect(4) = 1e-30
Identities = 49/83 (59%), Positives = 63/83 (75%)
Frame = +2
Query: 377 ESEFWVTRKELVSTNASKVLKQRVGFKSAMITDINPATNGRSNKVTFNLTPEIIDQIFAG 556
ESEFW TRK L+ +K KQ+ GFKSAM+ D+ P+ +G++NKVTF+LT EII QIFA
Sbjct: 161 ESEFWATRKNLLDDETNKSSKQKPGFKSAMLADVRPSADGQTNKVTFSLTTEIIHQIFAE 220
Query: 557 KLAVHKAYLKFVPYKFSEVEFWT 625
K AVH+A+L +VP K SE +FWT
Sbjct: 221 KPAVHRAFLDYVPKKLSEKDFWT 243
Score = 43.1 bits (100), Expect(4) = 1e-30
Identities = 21/44 (47%), Positives = 31/44 (70%), Gaps = 1/44 (2%)
Frame = +2
Query: 17 TILDLGVKGMLIMMEDRIIFTPNNPTS-VKLTIGLESVQKHLFN 145
T+ D G G+L M ED++IFTPN+P S +KL++ S++ H FN
Sbjct: 13 TLKDPGHGGVLRMSEDKLIFTPNDPRSLMKLSVDFRSIKGHKFN 56
Score = 26.2 bits (56), Expect(4) = 1e-30
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 172 SNNGGCCIF*FENFSEHDVCCEFMNKFL 255
S+ GG IF F+N D+C +F+ + L
Sbjct: 74 SDKGGGYIFEFDNVGNRDLCRDFVARVL 101
Score = 25.8 bits (55), Expect(4) = 1e-30
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +3
Query: 324 EQLSTAEMDFRMKLL 368
EQLS+AEM+ RMKLL
Sbjct: 126 EQLSSAEMERRMKLL 140
>dbj|BAK04994.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 596
Score = 106 bits (264), Expect(4) = 2e-30
Identities = 50/83 (60%), Positives = 63/83 (75%)
Frame = +2
Query: 377 ESEFWVTRKELVSTNASKVLKQRVGFKSAMITDINPATNGRSNKVTFNLTPEIIDQIFAG 556
ESEFW TRK L+ SK KQ+ GFKSAM+ D+ P+ +G++NKVTF+LT EII QIFA
Sbjct: 157 ESEFWATRKNLLDDETSKGSKQKPGFKSAMLADVRPSADGQTNKVTFSLTTEIIHQIFAE 216
Query: 557 KLAVHKAYLKFVPYKFSEVEFWT 625
K AVH+A+L +VP K SE +FWT
Sbjct: 217 KPAVHRAFLDYVPKKLSEKDFWT 239
Score = 41.6 bits (96), Expect(4) = 2e-30
Identities = 19/44 (43%), Positives = 30/44 (68%), Gaps = 1/44 (2%)
Frame = +2
Query: 17 TILDLGVKGMLIMMEDRIIFTPNNPTS-VKLTIGLESVQKHLFN 145
T+ D G G+L M ED+ FTPN+P S +KL++ ++++ H FN
Sbjct: 9 TLKDRGTGGVLRMSEDKFTFTPNDPRSLMKLSVDFQTIKGHKFN 52
Score = 26.2 bits (56), Expect(4) = 2e-30
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 172 SNNGGCCIF*FENFSEHDVCCEFMNKFL 255
S+ GG IF F+N D+C +F+ + L
Sbjct: 70 SDKGGGYIFEFDNVGNRDLCRDFVARVL 97
Score = 25.8 bits (55), Expect(4) = 2e-30
Identities = 12/15 (80%), Positives = 14/15 (93%)
Frame = +3
Query: 324 EQLSTAEMDFRMKLL 368
EQLS+AEM+ RMKLL
Sbjct: 122 EQLSSAEMERRMKLL 136
>gb|EEC83408.1| hypothetical protein OsI_28861 [Oryza sativa Indica Group]
gi|222640385|gb|EEE68517.1| hypothetical protein
OsJ_26954 [Oryza sativa Japonica Group]
Length = 625
Score = 110 bits (275), Expect(4) = 4e-30
Identities = 53/83 (63%), Positives = 64/83 (77%)
Frame = +2
Query: 377 ESEFWVTRKELVSTNASKVLKQRVGFKSAMITDINPATNGRSNKVTFNLTPEIIDQIFAG 556
ESEFW TRK L+ A+K KQR GFKSAM+ D+ P+ +GR+NKVTF+LT EII QIFA
Sbjct: 161 ESEFWATRKNLLEDEANKGSKQRPGFKSAMLADVRPSADGRTNKVTFSLTTEIIHQIFAE 220
Query: 557 KLAVHKAYLKFVPYKFSEVEFWT 625
K AVH+A+L FVP K SE +FWT
Sbjct: 221 KPAVHRAFLDFVPKKMSEKDFWT 243
Score = 39.7 bits (91), Expect(4) = 4e-30
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +2
Query: 17 TILDLGVKGMLIMMEDRIIFTPNNPTS-VKLTIGLESVQKHLFNVKRNHKEA 169
T+ D G G+L M ED+ FTP++P S +KL + S++ H FN K A
Sbjct: 13 TLKDPGTTGVLRMNEDKFTFTPHDPRSAMKLNVDFRSIKGHKFNKVDGSKPA 64
Score = 25.8 bits (55), Expect(4) = 4e-30
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +3
Query: 321 DEQLSTAEMDFRMKLLDNQN 380
+EQLS AEM RMKLL +
Sbjct: 125 EEQLSAAEMQRRMKLLQEDS 144
Score = 22.7 bits (47), Expect(4) = 4e-30
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 172 SNNGGCCIF*FENFSEHDVCCEFMNKFL 255
S+ GG +F F+N + D+ +F+ K L
Sbjct: 74 SDKGGGYMFEFDNVTNRDLSRDFVAKVL 101
>ref|NP_001061583.1| Os08g0338200 [Oryza sativa Japonica Group]
gi|38636938|dbj|BAD03200.1| unknown protein [Oryza
sativa Japonica Group] gi|113623552|dbj|BAF23497.1|
Os08g0338200 [Oryza sativa Japonica Group]
gi|215686948|dbj|BAG90767.1| unnamed protein product
[Oryza sativa Japonica Group]
Length = 604
Score = 110 bits (275), Expect(4) = 4e-30
Identities = 53/83 (63%), Positives = 64/83 (77%)
Frame = +2
Query: 377 ESEFWVTRKELVSTNASKVLKQRVGFKSAMITDINPATNGRSNKVTFNLTPEIIDQIFAG 556
ESEFW TRK L+ A+K KQR GFKSAM+ D+ P+ +GR+NKVTF+LT EII QIFA
Sbjct: 161 ESEFWATRKNLLEDEANKGSKQRPGFKSAMLADVRPSADGRTNKVTFSLTTEIIHQIFAE 220
Query: 557 KLAVHKAYLKFVPYKFSEVEFWT 625
K AVH+A+L FVP K SE +FWT
Sbjct: 221 KPAVHRAFLDFVPKKMSEKDFWT 243
Score = 39.7 bits (91), Expect(4) = 4e-30
Identities = 21/52 (40%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Frame = +2
Query: 17 TILDLGVKGMLIMMEDRIIFTPNNPTS-VKLTIGLESVQKHLFNVKRNHKEA 169
T+ D G G+L M ED+ FTP++P S +KL + S++ H FN K A
Sbjct: 13 TLKDPGTTGVLRMNEDKFTFTPHDPRSAMKLNVDFRSIKGHKFNKVDGSKPA 64
Score = 25.8 bits (55), Expect(4) = 4e-30
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +3
Query: 321 DEQLSTAEMDFRMKLLDNQN 380
+EQLS AEM RMKLL +
Sbjct: 125 EEQLSAAEMQRRMKLLQEDS 144
Score = 22.7 bits (47), Expect(4) = 4e-30
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 172 SNNGGCCIF*FENFSEHDVCCEFMNKFL 255
S+ GG +F F+N + D+ +F+ K L
Sbjct: 74 SDKGGGYMFEFDNVTNRDLSRDFVAKVL 101