BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00023115
         (316 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002310581.1| predicted protein [Populus trichocarpa] gi|2...    56   3e-06
ref|XP_004143479.1| PREDICTED: DNA polymerase III PolC-type-like...    55   6e-06
ref|NP_195691.4| exonuclease/ nucleic acid binding protein [Arab...    54   1e-05
emb|CAA18767.1| hypothetical protein [Arabidopsis thaliana] gi|7...    54   1e-05

>ref|XP_002310581.1| predicted protein [Populus trichocarpa] gi|222853484|gb|EEE91031.1|
           predicted protein [Populus trichocarpa]
          Length = 231

 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 34/100 (34%), Positives = 51/100 (51%), Gaps = 3/100 (3%)
 Frame = -3

Query: 299 RVIEISSIK---RNLVDLRFLDKFEAVIKPRIVGHEIRKLDRPNGLTSSLVLNSAEFEYY 129
           RV+E  +I    R LV+L   D +  +I+P+ +     K  R +G+T   V N+  FE  
Sbjct: 32  RVLEFGAITVCPRKLVEL---DSYSTLIRPKDLSAVALKSGRCDGITRGAVSNAPAFEEV 88

Query: 128 ANSLSQFLNKRIWIGHNISRSDRPKLISEYEDCGIGCPEP 9
           A+ +   LN RIW GHNI R D  ++   + + G   P P
Sbjct: 89  ADKIFSILNGRIWAGHNIQRFDCVRIKEAFAEIGKPAPVP 128


>ref|XP_004143479.1| PREDICTED: DNA polymerase III PolC-type-like [Cucumis sativus]
           gi|449504833|ref|XP_004162307.1| PREDICTED: DNA
           polymerase III PolC-type-like [Cucumis sativus]
          Length = 269

 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 31/98 (31%), Positives = 50/98 (51%)
 Frame = -3

Query: 299 RVIEISSIKRNLVDLRFLDKFEAVIKPRIVGHEIRKLDRPNGLTSSLVLNSAEFEYYANS 120
           RV+E  +I    + L  L+ F  +I+P  +     +  RP+G+T + V  +  FE  A+ 
Sbjct: 36  RVLEFGAIVVCPMKLVELESFTTLIRPTDLSAVALRSSRPDGITRAAVATAPLFEEVADK 95

Query: 119 LSQFLNKRIWIGHNISRSDRPKLISEYEDCGIGCPEPL 6
           +   LN RIW GHNI R D  ++   + + G   P P+
Sbjct: 96  IFSILNGRIWAGHNIRRFDCVRIKEAFAEIGRPAPIPV 133


>ref|NP_195691.4| exonuclease/ nucleic acid binding protein [Arabidopsis thaliana]
           gi|332661722|gb|AEE87122.1| exonuclease/ nucleic acid
           binding protein [Arabidopsis thaliana]
          Length = 255

 Score = 54.3 bits (129), Expect = 1e-05
 Identities = 28/83 (33%), Positives = 43/83 (51%)
 Frame = -3

Query: 257 LRFLDKFEAVIKPRIVGHEIRKLDRPNGLTSSLVLNSAEFEYYANSLSQFLNKRIWIGHN 78
           L  L+ F  +I+P+ +     +  R +G+T + V N+  FE  A  +   LN RIW GHN
Sbjct: 42  LEELESFTTLIQPKDLSVVSIRSSRSDGITRAKVTNAPSFEDVAEKIHGLLNGRIWAGHN 101

Query: 77  ISRSDRPKLISEYEDCGIGCPEP 9
           I R D  ++   + + G   PEP
Sbjct: 102 IRRFDCVRIKEAFAEIGKAAPEP 124


>emb|CAA18767.1| hypothetical protein [Arabidopsis thaliana]
           gi|7270965|emb|CAB80644.1| hypothetical protein
           [Arabidopsis thaliana]
          Length = 236

 Score = 54.3 bits (129), Expect = 1e-05
 Identities = 28/83 (33%), Positives = 43/83 (51%)
 Frame = -3

Query: 257 LRFLDKFEAVIKPRIVGHEIRKLDRPNGLTSSLVLNSAEFEYYANSLSQFLNKRIWIGHN 78
           L  L+ F  +I+P+ +     +  R +G+T + V N+  FE  A  +   LN RIW GHN
Sbjct: 42  LEELESFTTLIQPKDLSVVSIRSSRSDGITRAKVTNAPSFEDVAEKIHGLLNGRIWAGHN 101

Query: 77  ISRSDRPKLISEYEDCGIGCPEP 9
           I R D  ++   + + G   PEP
Sbjct: 102 IRRFDCVRIKEAFAEIGKAAPEP 124