BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00023100
         (672 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCH50966.1| T4.5 [Malus x robusta]                                113   4e-23
gb|AFP55537.1| retrotransposon polyprotein [Rosa rugosa]               86   9e-15
ref|XP_002330417.1| predicted protein [Populus trichocarpa] gi|2...    82   7e-14
gb|AAK51235.1|AF287471_1 polyprotein [Arabidopsis thaliana]            80   4e-13
emb|CAN65114.1| hypothetical protein VITISV_011221 [Vitis vinifera]    80   5e-13

>emb|CCH50966.1| T4.5 [Malus x robusta]
          Length = 1670

 Score =  113 bits (282), Expect = 4e-23
 Identities = 52/116 (44%), Positives = 78/116 (67%)
 Frame = +3

Query: 324 NAPLVVPSTNTSYSFQNIANMVPLKLKRENYLMWKQLFLPVLKTYDLMGLIEGTDLCPSR 503
           N P++   T    S  N+A MVP KL R+NY+ W+ LF+PVLK + L+GL+ G DLCP  
Sbjct: 256 NPPIMTLGT---ISITNVAGMVPTKLNRQNYITWRSLFIPVLKRFKLIGLVNGEDLCPPP 312

Query: 504 FLMNNTGNFTNIVNPHYVAWVKRDQMLLIWINATLSEEVLPYAVGLPTARDLWLTL 671
           F+ + +G  T + N  +  W +RDQ+L+IWIN+TLS+++LP  +G+  +R LW +L
Sbjct: 313 FVRDPSG--TCVPNASFETWCERDQILMIWINSTLSKDLLPLTIGMEDSRSLWQSL 366


>gb|AFP55537.1| retrotransposon polyprotein [Rosa rugosa]
          Length = 1384

 Score = 85.5 bits (210), Expect = 9e-15
 Identities = 38/109 (34%), Positives = 64/109 (58%)
 Frame = +3

Query: 345 STNTSYSFQNIANMVPLKLKRENYLMWKQLFLPVLKTYDLMGLIEGTDLCPSRFLMNNTG 524
           S++++ +  +++N + +KL R NY +W     P+LK+  L G ++GT+LCP  FL +  G
Sbjct: 3   SSSSTENTPSVSNFLTIKLDRTNYPLWLAQITPILKSRKLWGFVDGTNLCPPCFLKDKAG 62

Query: 525 NFTNIVNPHYVAWVKRDQMLLIWINATLSEEVLPYAVGLPTARDLWLTL 671
             T+ VNP +  W+ +DQM+L WIN +L+ +VL       +    W  L
Sbjct: 63  QLTDQVNPDFEPWILQDQMVLSWINGSLTPKVLSTVARSTSLHATWTAL 111


>ref|XP_002330417.1| predicted protein [Populus trichocarpa] gi|222871802|gb|EEF08933.1|
           predicted protein [Populus trichocarpa]
          Length = 231

 Score = 82.4 bits (202), Expect = 7e-14
 Identities = 38/109 (34%), Positives = 61/109 (55%)
 Frame = +3

Query: 345 STNTSYSFQNIANMVPLKLKRENYLMWKQLFLPVLKTYDLMGLIEGTDLCPSRFLMNNTG 524
           +++T     + +  + +KL R NY +W    +P+LK+ +LMG + GT+ CP  F  N  G
Sbjct: 5   NSSTGVVVPSHSGFMSIKLDRTNYPLWLAQIVPILKSKNLMGFVTGTNPCPPEFKSNTDG 64

Query: 525 NFTNIVNPHYVAWVKRDQMLLIWINATLSEEVLPYAVGLPTARDLWLTL 671
             T  V+P Y  W ++DQM+L WIN +LS  VL       +++  W +L
Sbjct: 65  TITTEVDPRYATWHQQDQMILSWINNSLSPTVLSTVARFTSSQATWSSL 113


>gb|AAK51235.1|AF287471_1 polyprotein [Arabidopsis thaliana]
          Length = 1453

 Score = 80.1 bits (196), Expect = 4e-13
 Identities = 40/101 (39%), Positives = 61/101 (60%), Gaps = 1/101 (0%)
 Frame = +3

Query: 372 NIANMVPLKLKRENYLMWKQLFLPVLKTYDLMGLIEGTDLCPSRFLMNNTGNFT-NIVNP 548
           ++++ V LKL   NYL+WK  F  +L  + L+G + G    P R L   TG+ + ++ NP
Sbjct: 12  HVSSSVTLKLNDSNYLLWKTQFESLLSCHKLIGFVNGGITPPPRTLNVVTGDTSVDVANP 71

Query: 549 HYVAWVKRDQMLLIWINATLSEEVLPYAVGLPTARDLWLTL 671
            Y +W   DQ++  W+  TLSEEVL Y   L T+RD+W++L
Sbjct: 72  QYESWFCTDQLIRSWLFGTLSEEVLGYVHNLQTSRDIWISL 112


>emb|CAN65114.1| hypothetical protein VITISV_011221 [Vitis vinifera]
          Length = 787

 Score = 79.7 bits (195), Expect = 5e-13
 Identities = 39/102 (38%), Positives = 62/102 (60%)
 Frame = +3

Query: 366 FQNIANMVPLKLKRENYLMWKQLFLPVLKTYDLMGLIEGTDLCPSRFLMNNTGNFTNIVN 545
           F  + +M+ +KL   NYL+WK   LP+L++ DL+G ++GT + P RF        +  ++
Sbjct: 11  FNTLIHMITIKLSSSNYLLWKSQLLPLLESQDLLGYVDGTLVPPPRF----EPATSTTLS 66

Query: 546 PHYVAWVKRDQMLLIWINATLSEEVLPYAVGLPTARDLWLTL 671
             Y+AW   DQ LL  + ++L+EE +   VGL TAR++WL L
Sbjct: 67  TKYLAWKAADQRLLCLLLSSLTEEAIAAVVGLSTAREVWLAL 108