BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00023086
         (751 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFB70749.1| DNA-directed RNA polymerase subunit beta, partial...   275   7e-83
gb|AFB70750.1| DNA-directed RNA polymerase subunit beta, partial...   275   7e-83
gb|AFB70745.1| DNA-directed RNA polymerase subunit beta, partial...   275   7e-83
gb|AFB70746.1| DNA-directed RNA polymerase subunit beta, partial...   275   7e-83
gb|ADD31192.1| RNA polymerase beta subunit protein [Meliosma aff...   274   1e-82

>gb|AFB70749.1| DNA-directed RNA polymerase subunit beta, partial (chloroplast)
            [Pereskiopsis diguetii]
          Length = 1055

 Score =  275 bits (702), Expect(2) = 7e-83
 Identities = 132/137 (96%), Positives = 134/137 (97%)
 Frame = -2

Query: 750  IRVYISQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGTPVDMVFNPLGVPSRMNV 571
            I VYISQKREIKVGDKVAGRHGNKGI+SKILPRQDMPYLQDG PVDMVFNPLGVPSRMNV
Sbjct: 789  IHVYISQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNV 848

Query: 570  GQIFECSLGLAGYLLDRHYRISPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPG 391
            GQIFECSLGLAG LLDRHYRI+PFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPG
Sbjct: 849  GQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPG 908

Query: 390  KSRIFDGRTGDPFEQPV 340
            KSRIFDGRTGDPFEQPV
Sbjct: 909  KSRIFDGRTGDPFEQPV 925



 Score = 59.3 bits (142), Expect(2) = 7e-83
 Identities = 27/33 (81%), Positives = 29/33 (87%)
 Frame = -1

Query: 316  ELNHQADHKIHGSSSGHYALVTQQPLRGRSKQG 218
            +L HQ D KIHG SSGHYALVTQQPLRGR+KQG
Sbjct: 934  KLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQG 966


>gb|AFB70750.1| DNA-directed RNA polymerase subunit beta, partial (chloroplast)
            [Portulaca oleracea]
          Length = 1014

 Score =  275 bits (702), Expect(2) = 7e-83
 Identities = 132/137 (96%), Positives = 134/137 (97%)
 Frame = -2

Query: 750  IRVYISQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGTPVDMVFNPLGVPSRMNV 571
            I VYISQKREIKVGDKVAGRHGNKGI+SKILPRQDMPYLQDG PVDMVFNPLGVPSRMNV
Sbjct: 789  IHVYISQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNV 848

Query: 570  GQIFECSLGLAGYLLDRHYRISPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPG 391
            GQIFECSLGLAG LLDRHYRI+PFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPG
Sbjct: 849  GQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPG 908

Query: 390  KSRIFDGRTGDPFEQPV 340
            KSRIFDGRTGDPFEQPV
Sbjct: 909  KSRIFDGRTGDPFEQPV 925



 Score = 59.3 bits (142), Expect(2) = 7e-83
 Identities = 27/33 (81%), Positives = 29/33 (87%)
 Frame = -1

Query: 316  ELNHQADHKIHGSSSGHYALVTQQPLRGRSKQG 218
            +L HQ D KIHG SSGHYALVTQQPLRGR+KQG
Sbjct: 934  KLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQG 966


>gb|AFB70745.1| DNA-directed RNA polymerase subunit beta, partial (chloroplast)
            [Didierea madagascariensis]
          Length = 1014

 Score =  275 bits (702), Expect(2) = 7e-83
 Identities = 132/137 (96%), Positives = 134/137 (97%)
 Frame = -2

Query: 750  IRVYISQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGTPVDMVFNPLGVPSRMNV 571
            I VYISQKREIKVGDKVAGRHGNKGI+SKILPRQDMPYLQDG PVDMVFNPLGVPSRMNV
Sbjct: 789  IHVYISQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNV 848

Query: 570  GQIFECSLGLAGYLLDRHYRISPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPG 391
            GQIFECSLGLAG LLDRHYRI+PFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPG
Sbjct: 849  GQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPG 908

Query: 390  KSRIFDGRTGDPFEQPV 340
            KSRIFDGRTGDPFEQPV
Sbjct: 909  KSRIFDGRTGDPFEQPV 925



 Score = 59.3 bits (142), Expect(2) = 7e-83
 Identities = 27/33 (81%), Positives = 29/33 (87%)
 Frame = -1

Query: 316  ELNHQADHKIHGSSSGHYALVTQQPLRGRSKQG 218
            +L HQ D KIHG SSGHYALVTQQPLRGR+KQG
Sbjct: 934  KLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQG 966


>gb|AFB70746.1| DNA-directed RNA polymerase subunit beta, partial (chloroplast)
            [Maihuenia poeppigii]
          Length = 1013

 Score =  275 bits (702), Expect(2) = 7e-83
 Identities = 132/137 (96%), Positives = 134/137 (97%)
 Frame = -2

Query: 750  IRVYISQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGTPVDMVFNPLGVPSRMNV 571
            I VYISQKREIKVGDKVAGRHGNKGI+SKILPRQDMPYLQDG PVDMVFNPLGVPSRMNV
Sbjct: 788  IHVYISQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGRPVDMVFNPLGVPSRMNV 847

Query: 570  GQIFECSLGLAGYLLDRHYRISPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPG 391
            GQIFECSLGLAG LLDRHYRI+PFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPG
Sbjct: 848  GQIFECSLGLAGSLLDRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPG 907

Query: 390  KSRIFDGRTGDPFEQPV 340
            KSRIFDGRTGDPFEQPV
Sbjct: 908  KSRIFDGRTGDPFEQPV 924



 Score = 59.3 bits (142), Expect(2) = 7e-83
 Identities = 27/33 (81%), Positives = 29/33 (87%)
 Frame = -1

Query: 316  ELNHQADHKIHGSSSGHYALVTQQPLRGRSKQG 218
            +L HQ D KIHG SSGHYALVTQQPLRGR+KQG
Sbjct: 933  KLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQG 965


>gb|ADD31192.1| RNA polymerase beta subunit protein [Meliosma aff. cuneifolia Moore
            333]
          Length = 1070

 Score =  274 bits (700), Expect(2) = 1e-82
 Identities = 132/137 (96%), Positives = 134/137 (97%)
 Frame = -2

Query: 750  IRVYISQKREIKVGDKVAGRHGNKGIVSKILPRQDMPYLQDGTPVDMVFNPLGVPSRMNV 571
            IRVYISQKREIKVGDKVAGRHGNKGI+SKILPRQDMPYLQDGTPVDMVFNPLGVPSRMNV
Sbjct: 804  IRVYISQKREIKVGDKVAGRHGNKGIISKILPRQDMPYLQDGTPVDMVFNPLGVPSRMNV 863

Query: 570  GQIFECSLGLAGYLLDRHYRISPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPG 391
            GQIFECSLGLAG LLDRHYRI+PFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPG
Sbjct: 864  GQIFECSLGLAGDLLDRHYRIAPFDERYEQEASRKLVFSELYEASKQTANPWVFEPEYPG 923

Query: 390  KSRIFDGRTGDPFEQPV 340
            K  IFDGRTGDPFEQPV
Sbjct: 924  KGIIFDGRTGDPFEQPV 940



 Score = 59.3 bits (142), Expect(2) = 1e-82
 Identities = 27/33 (81%), Positives = 29/33 (87%)
 Frame = -1

Query: 316  ELNHQADHKIHGSSSGHYALVTQQPLRGRSKQG 218
            +L HQ D KIHG SSGHYALVTQQPLRGR+KQG
Sbjct: 949  KLIHQVDDKIHGRSSGHYALVTQQPLRGRAKQG 981