BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00023068
         (1244 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284592.2| PREDICTED: pentatricopeptide repeat-containi...   539   e-151
ref|XP_002520317.1| pentatricopeptide repeat-containing protein,...   530   e-148
ref|XP_002307458.1| predicted protein [Populus trichocarpa] gi|2...   525   e-146
ref|XP_004149431.1| PREDICTED: pentatricopeptide repeat-containi...   523   e-146
ref|XP_003526650.1| PREDICTED: pentatricopeptide repeat-containi...   509   e-142

>ref|XP_002284592.2| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
            mitochondrial-like [Vitis vinifera]
          Length = 476

 Score =  539 bits (1389), Expect = e-151
 Identities = 260/341 (76%), Positives = 294/341 (86%)
 Frame = +3

Query: 3    KYARAQRVAEAIYTFNVMEKYGVQQXXXXXXXXXXXXCKSKNVRKAQEIFDSMKDRFVPD 182
            KYAR+Q+V EA+YTFN+MEKY V              CKSKNV KAQEIF+ MKD+F+PD
Sbjct: 120  KYARSQKVKEAVYTFNIMEKYDVPPNLAAFNSLLSALCKSKNVVKAQEIFNGMKDQFIPD 179

Query: 183  SKTYSILLEGWGKSPNLPKAREVFREMVGNGCDPDIVTYGIMVDVLCKVGRVNEAINVVR 362
            SKTYSILLEGWGK+PNLPKARE+FREMV  GCDPDIVTYGIMVD+LCK GRV+EA+ +V+
Sbjct: 180  SKTYSILLEGWGKAPNLPKAREIFREMVDMGCDPDIVTYGIMVDILCKAGRVDEAVGIVK 239

Query: 363  EMDGNGCRPTSFIYSVLIHTYGIDNRIADAIDAFLEMEKNGIVADVVVYNALIGAFCKVN 542
            EMD + C+PTSFIYSVL+HTYGI+NRI DA+  FL+ME+N I ADV VYNALIGAFCKVN
Sbjct: 240  EMDSSVCKPTSFIYSVLVHTYGIENRIEDAVYTFLDMERNEIEADVAVYNALIGAFCKVN 299

Query: 543  RFKNVYRVLDEMDKKGIPSNSRTCNVILNSLISRGDTDEAFTVFRRMIKICEPDVDTYTM 722
            + KN YRVL+EMD KGI  NSRTCN+ILNSLIS GDTDEAF VFRRMIK+C+PD DTYTM
Sbjct: 300  KLKNAYRVLNEMDCKGIRPNSRTCNIILNSLISCGDTDEAFRVFRRMIKVCDPDADTYTM 359

Query: 723  MIKMFCEIDKLEMALKVWKYMSLKRFVPSMHTFSVLINGLCAKGEVTKACVLVEEMLEKG 902
            MIKMFCE DKLEMALKVWKYM LK+FVPSMHTFSVLINGLC KG  +KAC+L+EEM+EKG
Sbjct: 360  MIKMFCENDKLEMALKVWKYMRLKQFVPSMHTFSVLINGLCKKGNASKACILLEEMIEKG 419

Query: 903  IQPSGSTFGRLRQLLIKEKREDVLEFLIEKMNLLVKEPLCD 1025
            I+PS  TFG+L+QLLIKE REDVLEFL EKMNLLVKEPLCD
Sbjct: 420  IRPSSVTFGKLKQLLIKEGREDVLEFLQEKMNLLVKEPLCD 460



 Score = 70.9 bits (172), Expect = 7e-10
 Identities = 46/217 (21%), Positives = 101/217 (46%), Gaps = 1/217 (0%)
 Frame = +3

Query: 288 IVTYGIMVDVLCKVGRVNEAINVVREMDGNGCRPTSFIYSVLIHTYGIDNRIADAIDAFL 467
           I  Y  M++ L K+ +     ++V +M           + +++  Y    ++ +A+  F 
Sbjct: 77  IRAYHTMIESLAKIRQYQIMWDLVNKMRSLKILNVE-TFCIIMRKYARSQKVKEAVYTFN 135

Query: 468 EMEKNGIVADVVVYNALIGAFCKVNRFKNVYRVLDEMDKKGIPSNSRTCNVILNSLISRG 647
            MEK  +  ++  +N+L+ A CK         + + M  + IP +S+T +++L       
Sbjct: 136 IMEKYDVPPNLAAFNSLLSALCKSKNVVKAQEIFNGMKDQFIP-DSKTYSILLEGWGKAP 194

Query: 648 DTDEAFTVFRRMIKI-CEPDVDTYTMMIKMFCEIDKLEMALKVWKYMSLKRFVPSMHTFS 824
           +  +A  +FR M+ + C+PD+ TY +M+ + C+  +++ A+ + K M      P+   +S
Sbjct: 195 NLPKAREIFREMVDMGCDPDIVTYGIMVDILCKAGRVDEAVGIVKEMDSSVCKPTSFIYS 254

Query: 825 VLINGLCAKGEVTKACVLVEEMLEKGIQPSGSTFGRL 935
           VL++    +  +  A     +M    I+   + +  L
Sbjct: 255 VLVHTYGIENRIEDAVYTFLDMERNEIEADVAVYNAL 291


>ref|XP_002520317.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223540536|gb|EEF42103.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 439

 Score =  530 bits (1364), Expect = e-148
 Identities = 256/341 (75%), Positives = 294/341 (86%)
 Frame = +3

Query: 3    KYARAQRVAEAIYTFNVMEKYGVQQXXXXXXXXXXXXCKSKNVRKAQEIFDSMKDRFVPD 182
            KYARAQ++ EA+YTFNVMEKY V              CKSKNVRKAQEIFDS KDRFVPD
Sbjct: 99   KYARAQKLEEAVYTFNVMEKYDVPPNLAAFNGLFSALCKSKNVRKAQEIFDSSKDRFVPD 158

Query: 183  SKTYSILLEGWGKSPNLPKAREVFREMVGNGCDPDIVTYGIMVDVLCKVGRVNEAINVVR 362
            SKTY+ILLEGWGK+PNLPKARE+FREMV  GC PDIVTYGIMVD+LCK GRV+EA+++V+
Sbjct: 159  SKTYTILLEGWGKTPNLPKAREIFREMVDVGCSPDIVTYGIMVDILCKAGRVDEALDIVK 218

Query: 363  EMDGNGCRPTSFIYSVLIHTYGIDNRIADAIDAFLEMEKNGIVADVVVYNALIGAFCKVN 542
            EMD   C+PTSFIYSVLIHTYGI+NRI DA+D FL MEKNG+ ADV  YNALIGAFCKVN
Sbjct: 219  EMDLTICKPTSFIYSVLIHTYGIENRIEDAVDTFLGMEKNGVKADVAAYNALIGAFCKVN 278

Query: 543  RFKNVYRVLDEMDKKGIPSNSRTCNVILNSLISRGDTDEAFTVFRRMIKICEPDVDTYTM 722
            +FKNVYRVL+EMD KG+  NSRT N+ILN+LI+RG+TDEAF VFRRMIK+CEPD DTYTM
Sbjct: 279  KFKNVYRVLNEMDYKGMQPNSRTLNIILNNLIARGETDEAFRVFRRMIKVCEPDADTYTM 338

Query: 723  MIKMFCEIDKLEMALKVWKYMSLKRFVPSMHTFSVLINGLCAKGEVTKACVLVEEMLEKG 902
            MIKMFCE ++LEMALKVWKYM  K FVPSMHTFSVLINGLC +G+V+ ACV++E+M+EKG
Sbjct: 339  MIKMFCERNELEMALKVWKYMKKKHFVPSMHTFSVLINGLCEEGDVSHACVMLEDMIEKG 398

Query: 903  IQPSGSTFGRLRQLLIKEKREDVLEFLIEKMNLLVKEPLCD 1025
            I+PSG TFGRLR LLIKE REDVLEFL +K+N+L+KEPL D
Sbjct: 399  IRPSGVTFGRLRHLLIKEGREDVLEFLQQKINVLIKEPLWD 439



 Score = 73.9 bits (180), Expect = 8e-11
 Identities = 46/214 (21%), Positives = 97/214 (45%), Gaps = 1/214 (0%)
 Frame = +3

Query: 297 YGIMVDVLCKVGRVNEAINVVREMDGNGCRPTSFIYSVLIHTYGIDNRIADAIDAFLEME 476
           Y  M++ L K+ +     +++  M           + +++  Y    ++ +A+  F  ME
Sbjct: 59  YHTMIESLAKIRQYQIMWDLINAMKRKRMLNVE-TFCIIMRKYARAQKLEEAVYTFNVME 117

Query: 477 KNGIVADVVVYNALIGAFCKVNRFKNVYRVLDEMDKKGIPSNSRTCNVILNSLISRGDTD 656
           K  +  ++  +N L  A CK    +    + D    + +P +S+T  ++L       +  
Sbjct: 118 KYDVPPNLAAFNGLFSALCKSKNVRKAQEIFDSSKDRFVP-DSKTYTILLEGWGKTPNLP 176

Query: 657 EAFTVFRRMIKI-CEPDVDTYTMMIKMFCEIDKLEMALKVWKYMSLKRFVPSMHTFSVLI 833
           +A  +FR M+ + C PD+ TY +M+ + C+  +++ AL + K M L    P+   +SVLI
Sbjct: 177 KAREIFREMVDVGCSPDIVTYGIMVDILCKAGRVDEALDIVKEMDLTICKPTSFIYSVLI 236

Query: 834 NGLCAKGEVTKACVLVEEMLEKGIQPSGSTFGRL 935
           +    +  +  A      M + G++   + +  L
Sbjct: 237 HTYGIENRIEDAVDTFLGMEKNGVKADVAAYNAL 270


>ref|XP_002307458.1| predicted protein [Populus trichocarpa] gi|222856907|gb|EEE94454.1|
            predicted protein [Populus trichocarpa]
          Length = 440

 Score =  525 bits (1351), Expect = e-146
 Identities = 254/339 (74%), Positives = 287/339 (84%)
 Frame = +3

Query: 3    KYARAQRVAEAIYTFNVMEKYGVQQXXXXXXXXXXXXCKSKNVRKAQEIFDSMKDRFVPD 182
            KYARAQ+V EA+YTFN+M+KY V              CKSKNVRKAQEIFDS+KDRFVPD
Sbjct: 99   KYARAQKVEEAVYTFNIMDKYDVPPNLAAFNGLLSALCKSKNVRKAQEIFDSIKDRFVPD 158

Query: 183  SKTYSILLEGWGKSPNLPKAREVFREMVGNGCDPDIVTYGIMVDVLCKVGRVNEAINVVR 362
            SKTYSILLEGWGK PNLPKARE+FREMV NGC PDIVTYGIMVDVLCK GRV+EA+ +V 
Sbjct: 159  SKTYSILLEGWGKDPNLPKAREIFREMVSNGCRPDIVTYGIMVDVLCKAGRVDEALGIVN 218

Query: 363  EMDGNGCRPTSFIYSVLIHTYGIDNRIADAIDAFLEMEKNGIVADVVVYNALIGAFCKVN 542
            EMD   C+PT FIYSVL+HTYGI+NRI DA+  FLEME NGI  DV VYNALIGAFCK N
Sbjct: 219  EMDSTVCKPTPFIYSVLVHTYGIENRIEDAVSTFLEMENNGIEPDVAVYNALIGAFCKAN 278

Query: 543  RFKNVYRVLDEMDKKGIPSNSRTCNVILNSLISRGDTDEAFTVFRRMIKICEPDVDTYTM 722
            R KNVYRVL+EMD KG+  NSRT N+IL+SLI RG+TDEA+ VF RMIK+CEPD DTYTM
Sbjct: 279  RLKNVYRVLNEMDCKGVTPNSRTFNIILSSLIGRGETDEAYRVFLRMIKVCEPDADTYTM 338

Query: 723  MIKMFCEIDKLEMALKVWKYMSLKRFVPSMHTFSVLINGLCAKGEVTKACVLVEEMLEKG 902
            MIKMFCE D+L+ ALKVWKYM LKRF+PSMHTF VLINGLC KG+VT+ACVL+EEM+EKG
Sbjct: 339  MIKMFCERDELKKALKVWKYMKLKRFMPSMHTFQVLINGLCEKGDVTQACVLLEEMIEKG 398

Query: 903  IQPSGSTFGRLRQLLIKEKREDVLEFLIEKMNLLVKEPL 1019
            I+PSG TFGRLRQLLIKE REDVL+FL +K+N+LV +PL
Sbjct: 399  IRPSGVTFGRLRQLLIKEGREDVLKFLQKKINVLVNDPL 437



 Score = 75.5 bits (184), Expect = 3e-11
 Identities = 48/226 (21%), Positives = 102/226 (45%), Gaps = 1/226 (0%)
 Frame = +3

Query: 288 IVTYGIMVDVLCKVGRVNEAINVVREMDGNGCRPTSFIYSVLIHTYGIDNRIADAIDAFL 467
           +  +  ++D L K+ +     +VV+ M           + +++  Y    ++ +A+  F 
Sbjct: 56  VKAFHTVIDSLAKIRQYQLMWDVVKVMKSKRMVNVE-TFCIIMRKYARAQKVEEAVYTFN 114

Query: 468 EMEKNGIVADVVVYNALIGAFCKVNRFKNVYRVLDEMDKKGIPSNSRTCNVILNSLISRG 647
            M+K  +  ++  +N L+ A CK    +    + D +  + +P +S+T +++L       
Sbjct: 115 IMDKYDVPPNLAAFNGLLSALCKSKNVRKAQEIFDSIKDRFVP-DSKTYSILLEGWGKDP 173

Query: 648 DTDEAFTVFRRMIKI-CEPDVDTYTMMIKMFCEIDKLEMALKVWKYMSLKRFVPSMHTFS 824
           +  +A  +FR M+   C PD+ TY +M+ + C+  +++ AL +   M      P+   +S
Sbjct: 174 NLPKAREIFREMVSNGCRPDIVTYGIMVDVLCKAGRVDEALGIVNEMDSTVCKPTPFIYS 233

Query: 825 VLINGLCAKGEVTKACVLVEEMLEKGIQPSGSTFGRLRQLLIKEKR 962
           VL++    +  +  A     EM   GI+P  + +  L     K  R
Sbjct: 234 VLVHTYGIENRIEDAVSTFLEMENNGIEPDVAVYNALIGAFCKANR 279


>ref|XP_004149431.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
            mitochondrial-like [Cucumis sativus]
            gi|449499065|ref|XP_004160711.1| PREDICTED:
            pentatricopeptide repeat-containing protein At1g77360,
            mitochondrial-like [Cucumis sativus]
          Length = 439

 Score =  523 bits (1346), Expect = e-146
 Identities = 245/341 (71%), Positives = 292/341 (85%)
 Frame = +3

Query: 3    KYARAQRVAEAIYTFNVMEKYGVQQXXXXXXXXXXXXCKSKNVRKAQEIFDSMKDRFVPD 182
            KYARAQ+V EA+YTFNVMEKY ++             CKSKNVRKAQEIFD+MKD+FVPD
Sbjct: 99   KYARAQKVEEAVYTFNVMEKYNMKPNVAAFNGLLSALCKSKNVRKAQEIFDNMKDQFVPD 158

Query: 183  SKTYSILLEGWGKSPNLPKAREVFREMVGNGCDPDIVTYGIMVDVLCKVGRVNEAINVVR 362
            SKTYSIL+EGWG++PNLPKARE++REM+ +GC PD VTY IMVDVLCK GRV+EA+ +V+
Sbjct: 159  SKTYSILIEGWGRAPNLPKAREIYREMIDSGCIPDEVTYSIMVDVLCKAGRVDEAVEIVK 218

Query: 363  EMDGNGCRPTSFIYSVLIHTYGIDNRIADAIDAFLEMEKNGIVADVVVYNALIGAFCKVN 542
            EMD N C+P+SFIYSVL+HTYG++NRI DA+  FLEME+NG++ADV  YNALI AFCK N
Sbjct: 219  EMDYNNCKPSSFIYSVLVHTYGVENRIEDAVSTFLEMERNGVMADVAAYNALISAFCKAN 278

Query: 543  RFKNVYRVLDEMDKKGIPSNSRTCNVILNSLISRGDTDEAFTVFRRMIKICEPDVDTYTM 722
            + KNVYRVL +MD KG+  NSRTCN+I+NSLI RG+TDEAF +FRRMIK+CEPDVD+YTM
Sbjct: 279  KMKNVYRVLKDMDLKGVNPNSRTCNIIINSLIGRGETDEAFKIFRRMIKVCEPDVDSYTM 338

Query: 723  MIKMFCEIDKLEMALKVWKYMSLKRFVPSMHTFSVLINGLCAKGEVTKACVLVEEMLEKG 902
            +IKMFC   +L+MALK+WKYM  K+FVPSMHTFSVLINGLC  G  T+ACVL+EEM+EKG
Sbjct: 339  IIKMFCGRKELDMALKIWKYMKKKQFVPSMHTFSVLINGLCQIGNATQACVLLEEMIEKG 398

Query: 903  IQPSGSTFGRLRQLLIKEKREDVLEFLIEKMNLLVKEPLCD 1025
            I+PSG+TFGRLR LLIKE R+DVL+FL EKMNLLVKEPLCD
Sbjct: 399  IRPSGATFGRLRHLLIKEGRKDVLKFLQEKMNLLVKEPLCD 439



 Score = 77.8 bits (190), Expect = 5e-12
 Identities = 50/236 (21%), Positives = 107/236 (45%), Gaps = 1/236 (0%)
 Frame = +3

Query: 297  YGIMVDVLCKVGRVNEAINVVREMDGNGCRPTSFIYSVLIHTYGIDNRIADAIDAFLEME 476
            Y  M++ L K+ +     ++V  M           + +++  Y    ++ +A+  F  ME
Sbjct: 59   YHSMIESLAKIRQYQMVWDLVNAMRNKEILNVE-AFCIIMRKYARAQKVEEAVYTFNVME 117

Query: 477  KNGIVADVVVYNALIGAFCKVNRFKNVYRVLDEMDKKGIPSNSRTCNVILNSLISRGDTD 656
            K  +  +V  +N L+ A CK    +    + D M  + +P +S+T ++++       +  
Sbjct: 118  KYNMKPNVAAFNGLLSALCKSKNVRKAQEIFDNMKDQFVP-DSKTYSILIEGWGRAPNLP 176

Query: 657  EAFTVFRRMIKI-CEPDVDTYTMMIKMFCEIDKLEMALKVWKYMSLKRFVPSMHTFSVLI 833
            +A  ++R MI   C PD  TY++M+ + C+  +++ A+++ K M      PS   +SVL+
Sbjct: 177  KAREIYREMIDSGCIPDEVTYSIMVDVLCKAGRVDEAVEIVKEMDYNNCKPSSFIYSVLV 236

Query: 834  NGLCAKGEVTKACVLVEEMLEKGIQPSGSTFGRLRQLLIKEKREDVLEFLIEKMNL 1001
            +    +  +  A     EM   G+    + +  L     K  +   +  +++ M+L
Sbjct: 237  HTYGVENRIEDAVSTFLEMERNGVMADVAAYNALISAFCKANKMKNVYRVLKDMDL 292


>ref|XP_003526650.1| PREDICTED: pentatricopeptide repeat-containing protein At1g77360,
            mitochondrial-like [Glycine max]
          Length = 461

 Score =  509 bits (1310), Expect = e-142
 Identities = 248/341 (72%), Positives = 282/341 (82%)
 Frame = +3

Query: 3    KYARAQRVAEAIYTFNVMEKYGVQQXXXXXXXXXXXXCKSKNVRKAQEIFDSMKDRFVPD 182
            KYARA +V EA+YTFNVM+KY V              CKS NVRKAQEIFD+MK +FVPD
Sbjct: 121  KYARANKVDEAVYTFNVMDKYDVVPNLAAFNGLLSALCKSNNVRKAQEIFDAMKGQFVPD 180

Query: 183  SKTYSILLEGWGKSPNLPKAREVFREMVGNGCDPDIVTYGIMVDVLCKVGRVNEAINVVR 362
             K+YSILLEGWGK+PNLP+AREVFREMV  GCDPD+VTYGIMVDVLCK GRV+EA+ VV+
Sbjct: 181  EKSYSILLEGWGKAPNLPRAREVFREMVEAGCDPDVVTYGIMVDVLCKAGRVDEAVEVVK 240

Query: 363  EMDGNGCRPTSFIYSVLIHTYGIDNRIADAIDAFLEMEKNGIVADVVVYNALIGAFCKVN 542
            EMD   CRPTSFIYSVL+HTYG+++RI DAID FLEM K GI ADVV YNALIGAFCKVN
Sbjct: 241  EMDVGNCRPTSFIYSVLVHTYGVEHRIEDAIDTFLEMAKKGIKADVVAYNALIGAFCKVN 300

Query: 543  RFKNVYRVLDEMDKKGIPSNSRTCNVILNSLISRGDTDEAFTVFRRMIKICEPDVDTYTM 722
            +FKNV+RVL EM+  G+  NSRTCNVI++S+I +G TD AF VF RMIK+CEPD DTYTM
Sbjct: 301  KFKNVHRVLKEMESNGVAPNSRTCNVIISSMIGQGQTDRAFRVFCRMIKLCEPDADTYTM 360

Query: 723  MIKMFCEIDKLEMALKVWKYMSLKRFVPSMHTFSVLINGLCAKGEVTKACVLVEEMLEKG 902
            MIKMFCE ++LEMALK+WKYM  K+FVPSMHTFS LI GLC K    KACV++EEM+EKG
Sbjct: 361  MIKMFCEKNELEMALKIWKYMKSKQFVPSMHTFSALIKGLCEKDNAAKACVVMEEMIEKG 420

Query: 903  IQPSGSTFGRLRQLLIKEKREDVLEFLIEKMNLLVKEPLCD 1025
            I+PS  TFGRLRQLLIKE REDVL+FL EKMNLLVKEPL D
Sbjct: 421  IRPSRITFGRLRQLLIKEGREDVLKFLHEKMNLLVKEPLYD 461



 Score = 87.8 bits (216), Expect = 5e-15
 Identities = 53/213 (24%), Positives = 106/213 (49%), Gaps = 1/213 (0%)
 Frame = +3

Query: 273 GCDPDIVTYGIMVDVLCKVGRVNEAINVVREMDGNGCRPTSFIYSVLIHTYGIDNRIADA 452
           G    I  Y +M++ L K+ +     ++V  M   G       + +++  Y   N++ +A
Sbjct: 73  GYSHSIRAYHLMIESLAKIRQYQIVWDLVSAMRKKGMLNVE-TFCIMMRKYARANKVDEA 131

Query: 453 IDAFLEMEKNGIVADVVVYNALIGAFCKVNRFKNVYRVLDEMDKKGIPSNSRTCNVILNS 632
           +  F  M+K  +V ++  +N L+ A CK N  +    + D M  + +P + ++ +++L  
Sbjct: 132 VYTFNVMDKYDVVPNLAAFNGLLSALCKSNNVRKAQEIFDAMKGQFVP-DEKSYSILLEG 190

Query: 633 LISRGDTDEAFTVFRRMIKI-CEPDVDTYTMMIKMFCEIDKLEMALKVWKYMSLKRFVPS 809
                +   A  VFR M++  C+PDV TY +M+ + C+  +++ A++V K M +    P+
Sbjct: 191 WGKAPNLPRAREVFREMVEAGCDPDVVTYGIMVDVLCKAGRVDEAVEVVKEMDVGNCRPT 250

Query: 810 MHTFSVLINGLCAKGEVTKACVLVEEMLEKGIQ 908
              +SVL++    +  +  A     EM +KGI+
Sbjct: 251 SFIYSVLVHTYGVEHRIEDAIDTFLEMAKKGIK 283