BLASTX nr result
ID: Coptis21_contig00023043
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis21_contig00023043 (426 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AAD29058.1| putative non-LTR retroelement reverse transcripta... 96 2e-18 gb|AAC63678.1| putative non-LTR retroelement reverse transcripta... 92 3e-17 emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis ... 89 4e-16 gb|EEE67582.1| hypothetical protein OsJ_25113 [Oryza sativa Japo... 87 2e-15 gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas... 87 2e-15 >gb|AAD29058.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis thaliana] Length = 1229 Score = 96.3 bits (238), Expect = 2e-18 Identities = 50/141 (35%), Positives = 79/141 (56%) Frame = -3 Query: 424 NTAYFHATTKMRLMKSQIFEIKNKEGVMLKQQNHIKEFIVGAYQEKYEHHEVSPDSHLMN 245 NT YFHA T+ R ++++ +++ GV +++ I + I G +Q+ + S + Sbjct: 246 NTGYFHAVTRNRRTQNRLTVMEDINGVAQHEEHQISQIISGYFQQIFTSESDGDFSVVDE 305 Query: 244 LIPRLVSEEDNLFISAIPTREEVTTTVFSMDANSAPGPDGFQGIFYQTFWSIIGQEVSTA 65 I +VS+ DN F++ IP EEV VFS++A+ APGPDGF FY ++W II +V Sbjct: 306 AIEPMVSQGDNDFLTRIPNDEEVKDAVFSINASKAPGPDGFTAGFYHSYWHIISTDVGRE 365 Query: 64 IISFFRDNVLPKGMNSSFLVL 2 I FF P+ MN + + L Sbjct: 366 IRLFFTSKNFPRRMNETHIRL 386 >gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis thaliana] Length = 1216 Score = 92.4 bits (228), Expect = 3e-17 Identities = 52/145 (35%), Positives = 77/145 (53%), Gaps = 4/145 (2%) Frame = -3 Query: 424 NTAYFHATTKMRLMKSQIFEIKNKEGVMLKQQNHIKEFIVGAYQEKYE----HHEVSPDS 257 N FH R + I EI ++G+++ Q I+ V +Q+ + +E Sbjct: 93 NNKTFHRAITTREAVNSIREIVTRDGLVVTSQQDIQTEAVNYFQDFLQTIPADYEGMCVE 152 Query: 256 HLMNLIPRLVSEEDNLFISAIPTREEVTTTVFSMDANSAPGPDGFQGIFYQTFWSIIGQE 77 L NL+P SE+D+ ++ + T EE+ +FSM + +PGPDG+ FY+ W IIG E Sbjct: 153 ELENLLPFRCSEDDHRLLTRVVTGEEIKKVIFSMPKDKSPGPDGYTSEFYKASWEIIGDE 212 Query: 76 VSTAIISFFRDNVLPKGMNSSFLVL 2 V AI SFF LPKG+NS+ L L Sbjct: 213 VIIAIQSFFAKGFLPKGVNSTILAL 237 >emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis thaliana] gi|7268307|emb|CAB78601.1| reverse transcriptase like protein [Arabidopsis thaliana] Length = 929 Score = 89.0 bits (219), Expect = 4e-16 Identities = 50/143 (34%), Positives = 76/143 (53%), Gaps = 2/143 (1%) Frame = -3 Query: 424 NTAYFHATTKMRLMKSQIFEIKNKEGVMLKQQNHIKEFIVGAYQEKYEHHEVSPDSHLMN 245 NT +FH +T +R +++I +K+ E + ++ +++ + Y++ Y +VS + Sbjct: 166 NTTFFHTSTVIRRRRNRIEMLKDSEDRWVTEKEALEKLAMDYYRKLYSLEDVSVVRGTLP 225 Query: 244 L--IPRLVSEEDNLFISAIPTREEVTTTVFSMDANSAPGPDGFQGIFYQTFWSIIGQEVS 71 PRL EE N TR+EV V SM APGPDG+Q +FYQ W +G+ VS Sbjct: 226 TEGFPRLTREEKNNLNRPF-TRDEVVVAVRSMGRFKAPGPDGYQPVFYQQCWETVGESVS 284 Query: 70 TAIISFFRDNVLPKGMNSSFLVL 2 ++ FF VLPK N LVL Sbjct: 285 KFVMEFFESGVLPKSTNDVLLVL 307 >gb|EEE67582.1| hypothetical protein OsJ_25113 [Oryza sativa Japonica Group] Length = 915 Score = 86.7 bits (213), Expect = 2e-15 Identities = 40/141 (28%), Positives = 78/141 (55%) Frame = -3 Query: 424 NTAYFHATTKMRLMKSQIFEIKNKEGVMLKQQNHIKEFIVGAYQEKYEHHEVSPDSHLMN 245 NT++FHAT R ++I +K ++G ++ + K FI+ ++ ++ + L++ Sbjct: 563 NTSFFHATCSERKRSNRIGRLKKEDGSWVESEEEKKSFIMQYFKNMFQSNGCQHPERLLS 622 Query: 244 LIPRLVSEEDNLFISAIPTREEVTTTVFSMDANSAPGPDGFQGIFYQTFWSIIGQEVSTA 65 + + V+EE N + A EE+ T++ S+ APGPDG +FY+ FW ++G +V++ Sbjct: 623 KVKKKVTEEMNECLMAEFIVEEIKTSIDSIGDLKAPGPDGMPAVFYKNFWDVVGGKVTSE 682 Query: 64 IISFFRDNVLPKGMNSSFLVL 2 ++ +P G N + +VL Sbjct: 683 VLDILNGGQMPLGWNETTIVL 703 >gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease H; Endonuclease/exonuclease/phosphatase [Medicago truncatula] Length = 1246 Score = 86.7 bits (213), Expect = 2e-15 Identities = 47/142 (33%), Positives = 81/142 (57%), Gaps = 1/142 (0%) Frame = -3 Query: 424 NTAYFHATTKMRLMKSQIFEIKNKEGVMLKQQNHIKEFIVGAYQEKYE-HHEVSPDSHLM 248 NTAYFH +K+R K+ I +++ + V + I+ ++ +Q + + + ++ Sbjct: 365 NTAYFHRISKVRATKNTISFLQDGDAV-ITDPARIEVHVLNYFQAIFSVDNSCIQNDLVV 423 Query: 247 NLIPRLVSEEDNLFISAIPTREEVTTTVFSMDANSAPGPDGFQGIFYQTFWSIIGQEVST 68 + IP LVS DN + +P EV VF+++ + APGP+GF G FYQT+W I+G +V Sbjct: 424 DTIPSLVSNVDNNSLLRLPLWGEVKNAVFTLNGDGAPGPNGFGGHFYQTYWDIVGADVIQ 483 Query: 67 AIISFFRDNVLPKGMNSSFLVL 2 ++ FF L + +NS+ +VL Sbjct: 484 SVQDFFISGQLAQNINSNLIVL 505