BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00023043
         (426 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAD29058.1| putative non-LTR retroelement reverse transcripta...    96   2e-18
gb|AAC63678.1| putative non-LTR retroelement reverse transcripta...    92   3e-17
emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis ...    89   4e-16
gb|EEE67582.1| hypothetical protein OsJ_25113 [Oryza sativa Japo...    87   2e-15
gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptas...    87   2e-15

>gb|AAD29058.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1229

 Score = 96.3 bits (238), Expect = 2e-18
 Identities = 50/141 (35%), Positives = 79/141 (56%)
 Frame = -3

Query: 424 NTAYFHATTKMRLMKSQIFEIKNKEGVMLKQQNHIKEFIVGAYQEKYEHHEVSPDSHLMN 245
           NT YFHA T+ R  ++++  +++  GV   +++ I + I G +Q+ +        S +  
Sbjct: 246 NTGYFHAVTRNRRTQNRLTVMEDINGVAQHEEHQISQIISGYFQQIFTSESDGDFSVVDE 305

Query: 244 LIPRLVSEEDNLFISAIPTREEVTTTVFSMDANSAPGPDGFQGIFYQTFWSIIGQEVSTA 65
            I  +VS+ DN F++ IP  EEV   VFS++A+ APGPDGF   FY ++W II  +V   
Sbjct: 306 AIEPMVSQGDNDFLTRIPNDEEVKDAVFSINASKAPGPDGFTAGFYHSYWHIISTDVGRE 365

Query: 64  IISFFRDNVLPKGMNSSFLVL 2
           I  FF     P+ MN + + L
Sbjct: 366 IRLFFTSKNFPRRMNETHIRL 386


>gb|AAC63678.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1216

 Score = 92.4 bits (228), Expect = 3e-17
 Identities = 52/145 (35%), Positives = 77/145 (53%), Gaps = 4/145 (2%)
 Frame = -3

Query: 424 NTAYFHATTKMRLMKSQIFEIKNKEGVMLKQQNHIKEFIVGAYQEKYE----HHEVSPDS 257
           N   FH     R   + I EI  ++G+++  Q  I+   V  +Q+  +     +E     
Sbjct: 93  NNKTFHRAITTREAVNSIREIVTRDGLVVTSQQDIQTEAVNYFQDFLQTIPADYEGMCVE 152

Query: 256 HLMNLIPRLVSEEDNLFISAIPTREEVTTTVFSMDANSAPGPDGFQGIFYQTFWSIIGQE 77
            L NL+P   SE+D+  ++ + T EE+   +FSM  + +PGPDG+   FY+  W IIG E
Sbjct: 153 ELENLLPFRCSEDDHRLLTRVVTGEEIKKVIFSMPKDKSPGPDGYTSEFYKASWEIIGDE 212

Query: 76  VSTAIISFFRDNVLPKGMNSSFLVL 2
           V  AI SFF    LPKG+NS+ L L
Sbjct: 213 VIIAIQSFFAKGFLPKGVNSTILAL 237


>emb|CAB10337.1| reverse transcriptase like protein [Arabidopsis thaliana]
           gi|7268307|emb|CAB78601.1| reverse transcriptase like
           protein [Arabidopsis thaliana]
          Length = 929

 Score = 89.0 bits (219), Expect = 4e-16
 Identities = 50/143 (34%), Positives = 76/143 (53%), Gaps = 2/143 (1%)
 Frame = -3

Query: 424 NTAYFHATTKMRLMKSQIFEIKNKEGVMLKQQNHIKEFIVGAYQEKYEHHEVSPDSHLMN 245
           NT +FH +T +R  +++I  +K+ E   + ++  +++  +  Y++ Y   +VS     + 
Sbjct: 166 NTTFFHTSTVIRRRRNRIEMLKDSEDRWVTEKEALEKLAMDYYRKLYSLEDVSVVRGTLP 225

Query: 244 L--IPRLVSEEDNLFISAIPTREEVTTTVFSMDANSAPGPDGFQGIFYQTFWSIIGQEVS 71
               PRL  EE N       TR+EV   V SM    APGPDG+Q +FYQ  W  +G+ VS
Sbjct: 226 TEGFPRLTREEKNNLNRPF-TRDEVVVAVRSMGRFKAPGPDGYQPVFYQQCWETVGESVS 284

Query: 70  TAIISFFRDNVLPKGMNSSFLVL 2
             ++ FF   VLPK  N   LVL
Sbjct: 285 KFVMEFFESGVLPKSTNDVLLVL 307


>gb|EEE67582.1| hypothetical protein OsJ_25113 [Oryza sativa Japonica Group]
          Length = 915

 Score = 86.7 bits (213), Expect = 2e-15
 Identities = 40/141 (28%), Positives = 78/141 (55%)
 Frame = -3

Query: 424 NTAYFHATTKMRLMKSQIFEIKNKEGVMLKQQNHIKEFIVGAYQEKYEHHEVSPDSHLMN 245
           NT++FHAT   R   ++I  +K ++G  ++ +   K FI+  ++  ++ +       L++
Sbjct: 563 NTSFFHATCSERKRSNRIGRLKKEDGSWVESEEEKKSFIMQYFKNMFQSNGCQHPERLLS 622

Query: 244 LIPRLVSEEDNLFISAIPTREEVTTTVFSMDANSAPGPDGFQGIFYQTFWSIIGQEVSTA 65
            + + V+EE N  + A    EE+ T++ S+    APGPDG   +FY+ FW ++G +V++ 
Sbjct: 623 KVKKKVTEEMNECLMAEFIVEEIKTSIDSIGDLKAPGPDGMPAVFYKNFWDVVGGKVTSE 682

Query: 64  IISFFRDNVLPKGMNSSFLVL 2
           ++       +P G N + +VL
Sbjct: 683 VLDILNGGQMPLGWNETTIVL 703


>gb|ABE87589.2| RNA-directed DNA polymerase (Reverse transcriptase); Ribonuclease
           H; Endonuclease/exonuclease/phosphatase [Medicago
           truncatula]
          Length = 1246

 Score = 86.7 bits (213), Expect = 2e-15
 Identities = 47/142 (33%), Positives = 81/142 (57%), Gaps = 1/142 (0%)
 Frame = -3

Query: 424 NTAYFHATTKMRLMKSQIFEIKNKEGVMLKQQNHIKEFIVGAYQEKYE-HHEVSPDSHLM 248
           NTAYFH  +K+R  K+ I  +++ + V +     I+  ++  +Q  +   +    +  ++
Sbjct: 365 NTAYFHRISKVRATKNTISFLQDGDAV-ITDPARIEVHVLNYFQAIFSVDNSCIQNDLVV 423

Query: 247 NLIPRLVSEEDNLFISAIPTREEVTTTVFSMDANSAPGPDGFQGIFYQTFWSIIGQEVST 68
           + IP LVS  DN  +  +P   EV   VF+++ + APGP+GF G FYQT+W I+G +V  
Sbjct: 424 DTIPSLVSNVDNNSLLRLPLWGEVKNAVFTLNGDGAPGPNGFGGHFYQTYWDIVGADVIQ 483

Query: 67  AIISFFRDNVLPKGMNSSFLVL 2
           ++  FF    L + +NS+ +VL
Sbjct: 484 SVQDFFISGQLAQNINSNLIVL 505