BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00022489
         (349 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003527511.1| PREDICTED: replication factor C subunit 1-li...    69   4e-10
ref|XP_003540824.1| PREDICTED: replication factor C subunit 1-li...    63   2e-08
ref|XP_002298160.1| predicted protein [Populus trichocarpa] gi|2...    61   1e-07
ref|XP_002265891.2| PREDICTED: replication factor C subunit 1-li...    58   9e-07
emb|CBI24290.3| unnamed protein product [Vitis vinifera]               58   9e-07

>ref|XP_003527511.1| PREDICTED: replication factor C subunit 1-like [Glycine max]
          Length = 947

 Score = 68.9 bits (167), Expect = 4e-10
 Identities = 34/62 (54%), Positives = 40/62 (64%)
 Frame = +1

Query: 163 MSDIRKWFMKQHDKNNNATKTDPPPEKPLPTKQEKNVSQGGQDSSSRRKTSKYFANDGKK 342
           MSDIRKWFMK HDK NNA  + P  +KP   K       GGQ+SS RR TSKYF ++ +K
Sbjct: 1   MSDIRKWFMKTHDKGNNAASSKPSSDKPQSEKTVAFAVAGGQESSGRRITSKYFNSNKQK 60

Query: 343 VK 348
            K
Sbjct: 61  GK 62


>ref|XP_003540824.1| PREDICTED: replication factor C subunit 1-like [Glycine max]
          Length = 1112

 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 35/66 (53%), Positives = 42/66 (63%), Gaps = 2/66 (3%)
 Frame = +1

Query: 157 FNMSDIRKWFMKQHDKNNNATKTDPPPE-KPLPTK-QEKNVSQGGQDSSSRRKTSKYFAN 330
           F  SDIRKWFMK HDK NNA  + P  + KP   K Q +    GGQ+SS RR TSKYF +
Sbjct: 160 FVASDIRKWFMKTHDKGNNAASSKPSNQPKPSSDKPQSEKTVAGGQESSGRRITSKYFNS 219

Query: 331 DGKKVK 348
           + +K K
Sbjct: 220 NKQKGK 225


>ref|XP_002298160.1| predicted protein [Populus trichocarpa] gi|222845418|gb|EEE82965.1|
           predicted protein [Populus trichocarpa]
          Length = 550

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 35/64 (54%), Positives = 41/64 (64%), Gaps = 4/64 (6%)
 Frame = +1

Query: 169 DIRKWFMKQHDKNNNATKTD----PPPEKPLPTKQEKNVSQGGQDSSSRRKTSKYFANDG 336
           DIRKWFMK HDK N+   T+    PPP +P   K E  V  GGQ+ S RRKTSKYFA + 
Sbjct: 4   DIRKWFMKAHDKGNDNAATNAEKKPPPTEP---KTETPVC-GGQEGSGRRKTSKYFAANK 59

Query: 337 KKVK 348
           +K K
Sbjct: 60  QKQK 63


>ref|XP_002265891.2| PREDICTED: replication factor C subunit 1-like [Vitis vinifera]
          Length = 933

 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 32/61 (52%), Positives = 37/61 (60%), Gaps = 8/61 (13%)
 Frame = +1

Query: 166 SDIRKWFMKQHDKNNNATKTDPPPE-------KPLP-TKQEKNVSQGGQDSSSRRKTSKY 321
           SDIRKWFMK+HD +N        PE       KP P T Q++    GGQ+SS RRKTSKY
Sbjct: 6   SDIRKWFMKKHDNDNGNPLKPAKPEPKASQSGKPSPATVQQEKPVHGGQESSCRRKTSKY 65

Query: 322 F 324
           F
Sbjct: 66  F 66


>emb|CBI24290.3| unnamed protein product [Vitis vinifera]
          Length = 941

 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 32/61 (52%), Positives = 37/61 (60%), Gaps = 8/61 (13%)
 Frame = +1

Query: 166 SDIRKWFMKQHDKNNNATKTDPPPE-------KPLP-TKQEKNVSQGGQDSSSRRKTSKY 321
           SDIRKWFMK+HD +N        PE       KP P T Q++    GGQ+SS RRKTSKY
Sbjct: 6   SDIRKWFMKKHDNDNGNPLKPAKPEPKASQSGKPSPATVQQEKPVHGGQESSCRRKTSKY 65

Query: 322 F 324
           F
Sbjct: 66  F 66