BLASTX nr result
ID: Coptis21_contig00022414
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00022414
(1293 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI27289.3| unnamed protein product [Vitis vinifera] 644 0.0
ref|XP_002274151.1| PREDICTED: pentatricopeptide repeat-containi... 644 0.0
ref|XP_002512079.1| pentatricopeptide repeat-containing protein,... 612 e-173
ref|XP_002311339.1| predicted protein [Populus trichocarpa] gi|2... 612 e-173
ref|XP_004135146.1| PREDICTED: pentatricopeptide repeat-containi... 572 e-161
>emb|CBI27289.3| unnamed protein product [Vitis vinifera]
Length = 967
Score = 644 bits (1661), Expect = 0.0
Identities = 314/429 (73%), Positives = 377/429 (87%)
Frame = +3
Query: 3 NSLIAHLSSLKDIHNLKRAFATVVFLLEKNPSVLEYKTVETLLCSMCSANTAAPAFALVK 182
NSLIAHL+SL D++NLKRAFA+ VFLLEKNPS+L++ TV TLL SM SANTAAPAFAL+
Sbjct: 100 NSLIAHLASLHDLYNLKRAFASAVFLLEKNPSLLDFGTVRTLLGSMNSANTAAPAFALIN 159
Query: 183 SMFKNRFFLPFSVWGGVLIDISRKNSNFVAFLRVFNENCKIALGEKLDFMKPDLNACNAA 362
MFKNR+F+PFS+WGGV+++I+R+N +FVAFLRVFNE C+IA+ EKL+ MKPDL+ACN A
Sbjct: 160 CMFKNRYFMPFSMWGGVIVEITRRNRSFVAFLRVFNETCRIAIDEKLESMKPDLDACNVA 219
Query: 363 LEGCCCELESISDAESVLETMSVLGVRPDEASFGFLAYLYSVKGVEDKIVELERLMEGFG 542
LEGC +LES+S+AE V+E MSVLG++PDE+SFGFLAYLY++KG+E+KIVELE LM GFG
Sbjct: 220 LEGCSQDLESVSEAEKVVEMMSVLGIQPDESSFGFLAYLYALKGLEEKIVELEGLMRGFG 279
Query: 543 VLSKRVFYSNLINGYVKSGSLQSVSEIIFHSLQEGDGHNVSFGEETYCVVVRGFLQNGNI 722
SK+V YS LIN YVKSG+L+ VS IF SL+E D +F EETYC VV+GFLQNG+I
Sbjct: 280 FSSKKVIYSYLINAYVKSGNLEYVSRTIFRSLREDDEQGPNFSEETYCEVVKGFLQNGSI 339
Query: 723 KDLAKLIIESQKLESASIRIDSSVGFGIVTACVNLGLLDKAHSILDQMTAEGGFVGLGVY 902
KDLA LIIE+QKLE +SI +D S+G+GI++ACV+LG LDKAHSILD+M +G VGLGVY
Sbjct: 340 KDLASLIIETQKLEPSSIAVDRSIGYGIISACVSLGFLDKAHSILDEMNVQGVSVGLGVY 399
Query: 903 TSIVKAYCKEQRTSEAAQLVMDISASGLQLDAGSYDTLIEASMSNQDFQSAFSLFRDMRE 1082
SI+KA+CKE RT+EAAQLV +IS+ GLQLDAGSYD LIEASMS+QDFQSAFSLFRDMRE
Sbjct: 400 VSILKAFCKEHRTAEAAQLVTEISSLGLQLDAGSYDALIEASMSSQDFQSAFSLFRDMRE 459
Query: 1083 AKIPDLQMSYLTIMTGLTENHRPELMAAFLDEVVEDPRIEIGTHDWNSIIHAFCKAGRLE 1262
A++PD++ SYLT+MTGLTENHRPELMAAFLDE+VEDPR+E+GTHDWNSIIHAFCK GRLE
Sbjct: 460 ARVPDMKGSYLTMMTGLTENHRPELMAAFLDEIVEDPRVEVGTHDWNSIIHAFCKVGRLE 519
Query: 1263 DARRTLRRM 1289
DARRT RRM
Sbjct: 520 DARRTFRRM 528
>ref|XP_002274151.1| PREDICTED: pentatricopeptide repeat-containing protein At1g69290
[Vitis vinifera]
Length = 655
Score = 644 bits (1661), Expect = 0.0
Identities = 314/429 (73%), Positives = 377/429 (87%)
Frame = +3
Query: 3 NSLIAHLSSLKDIHNLKRAFATVVFLLEKNPSVLEYKTVETLLCSMCSANTAAPAFALVK 182
NSLIAHL+SL D++NLKRAFA+ VFLLEKNPS+L++ TV TLL SM SANTAAPAFAL+
Sbjct: 100 NSLIAHLASLHDLYNLKRAFASAVFLLEKNPSLLDFGTVRTLLGSMNSANTAAPAFALIN 159
Query: 183 SMFKNRFFLPFSVWGGVLIDISRKNSNFVAFLRVFNENCKIALGEKLDFMKPDLNACNAA 362
MFKNR+F+PFS+WGGV+++I+R+N +FVAFLRVFNE C+IA+ EKL+ MKPDL+ACN A
Sbjct: 160 CMFKNRYFMPFSMWGGVIVEITRRNRSFVAFLRVFNETCRIAIDEKLESMKPDLDACNVA 219
Query: 363 LEGCCCELESISDAESVLETMSVLGVRPDEASFGFLAYLYSVKGVEDKIVELERLMEGFG 542
LEGC +LES+S+AE V+E MSVLG++PDE+SFGFLAYLY++KG+E+KIVELE LM GFG
Sbjct: 220 LEGCSQDLESVSEAEKVVEMMSVLGIQPDESSFGFLAYLYALKGLEEKIVELEGLMRGFG 279
Query: 543 VLSKRVFYSNLINGYVKSGSLQSVSEIIFHSLQEGDGHNVSFGEETYCVVVRGFLQNGNI 722
SK+V YS LIN YVKSG+L+ VS IF SL+E D +F EETYC VV+GFLQNG+I
Sbjct: 280 FSSKKVIYSYLINAYVKSGNLEYVSRTIFRSLREDDEQGPNFSEETYCEVVKGFLQNGSI 339
Query: 723 KDLAKLIIESQKLESASIRIDSSVGFGIVTACVNLGLLDKAHSILDQMTAEGGFVGLGVY 902
KDLA LIIE+QKLE +SI +D S+G+GI++ACV+LG LDKAHSILD+M +G VGLGVY
Sbjct: 340 KDLASLIIETQKLEPSSIAVDRSIGYGIISACVSLGFLDKAHSILDEMNVQGVSVGLGVY 399
Query: 903 TSIVKAYCKEQRTSEAAQLVMDISASGLQLDAGSYDTLIEASMSNQDFQSAFSLFRDMRE 1082
SI+KA+CKE RT+EAAQLV +IS+ GLQLDAGSYD LIEASMS+QDFQSAFSLFRDMRE
Sbjct: 400 VSILKAFCKEHRTAEAAQLVTEISSLGLQLDAGSYDALIEASMSSQDFQSAFSLFRDMRE 459
Query: 1083 AKIPDLQMSYLTIMTGLTENHRPELMAAFLDEVVEDPRIEIGTHDWNSIIHAFCKAGRLE 1262
A++PD++ SYLT+MTGLTENHRPELMAAFLDE+VEDPR+E+GTHDWNSIIHAFCK GRLE
Sbjct: 460 ARVPDMKGSYLTMMTGLTENHRPELMAAFLDEIVEDPRVEVGTHDWNSIIHAFCKVGRLE 519
Query: 1263 DARRTLRRM 1289
DARRT RRM
Sbjct: 520 DARRTFRRM 528
>ref|XP_002512079.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223549259|gb|EEF50748.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 650
Score = 612 bits (1578), Expect = e-173
Identities = 303/429 (70%), Positives = 367/429 (85%)
Frame = +3
Query: 3 NSLIAHLSSLKDIHNLKRAFATVVFLLEKNPSVLEYKTVETLLCSMCSANTAAPAFALVK 182
NSLI HLSSL+D NLKRAFA+V+F +EKNP L+++TV+++L SM AN+AAPAFALVK
Sbjct: 95 NSLITHLSSLQDTLNLKRAFASVIFFMEKNPQSLDFETVQSVLESMKFANSAAPAFALVK 154
Query: 183 SMFKNRFFLPFSVWGGVLIDISRKNSNFVAFLRVFNENCKIALGEKLDFMKPDLNACNAA 362
MFK+R+F+PF +WGG++ IS+KN FVAFL+VF E+ +IA+ EKLDFMKPDL ACN A
Sbjct: 155 CMFKHRYFMPFHLWGGLIGHISKKNGMFVAFLKVFEESYRIAVDEKLDFMKPDLGACNLA 214
Query: 363 LEGCCCELESISDAESVLETMSVLGVRPDEASFGFLAYLYSVKGVEDKIVELERLMEGFG 542
LE CC E+ES+SDA++V+E MSVLG++PDE SFGFLAYLY++KG++D+IVEL+ LMEGF
Sbjct: 215 LECCCEEIESVSDADNVIEIMSVLGIKPDEMSFGFLAYLYALKGLQDRIVELKSLMEGFS 274
Query: 543 VLSKRVFYSNLINGYVKSGSLQSVSEIIFHSLQEGDGHNVSFGEETYCVVVRGFLQNGNI 722
VL+KR+FYSNLI GYVKSG+L+SVS I SL+E D N + EETYC VV+GFL++G++
Sbjct: 275 VLNKRLFYSNLIRGYVKSGNLESVSATIICSLREEDEKNYNINEETYCEVVKGFLKDGSL 334
Query: 723 KDLAKLIIESQKLESASIRIDSSVGFGIVTACVNLGLLDKAHSILDQMTAEGGFVGLGVY 902
K LA LIIE++KLE SI ID S+ FG++ ACVNLGL DKAHSILD+M A+GG VG GVY
Sbjct: 335 KGLANLIIEARKLEPDSIEIDKSISFGVINACVNLGLSDKAHSILDEMDAKGGSVGFGVY 394
Query: 903 TSIVKAYCKEQRTSEAAQLVMDISASGLQLDAGSYDTLIEASMSNQDFQSAFSLFRDMRE 1082
I+KAYCKE RT+EA QLVM+IS GLQLDAGSYD LIEASM++QDFQSAF+LFRDMRE
Sbjct: 395 VPILKAYCKEGRTAEATQLVMEISNLGLQLDAGSYDALIEASMTSQDFQSAFTLFRDMRE 454
Query: 1083 AKIPDLQMSYLTIMTGLTENHRPELMAAFLDEVVEDPRIEIGTHDWNSIIHAFCKAGRLE 1262
++ PDL+ SYLTIMTGL ENHRPELMAAFLDEVVEDPRIE+ THDWNSIIHAFCKAGRLE
Sbjct: 455 SRSPDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRIEVKTHDWNSIIHAFCKAGRLE 514
Query: 1263 DARRTLRRM 1289
DA+RT RRM
Sbjct: 515 DAKRTFRRM 523
>ref|XP_002311339.1| predicted protein [Populus trichocarpa] gi|222851159|gb|EEE88706.1|
predicted protein [Populus trichocarpa]
Length = 654
Score = 612 bits (1577), Expect = e-173
Identities = 299/430 (69%), Positives = 363/430 (84%)
Frame = +3
Query: 3 NSLIAHLSSLKDIHNLKRAFATVVFLLEKNPSVLEYKTVETLLCSMCSANTAAPAFALVK 182
NSLI HLSSL D NLKRAFA++V+++EKNP L+++TV+ L SM ANTAAPAFAL+K
Sbjct: 100 NSLITHLSSLNDTINLKRAFASIVYVIEKNPKSLDFETVQLFLGSMVRANTAAPAFALIK 159
Query: 183 SMFKNRFFLPFSVWGGVLIDISRKNSNFVAFLRVFNENCKIALGEKLDFMKPDLNACNAA 362
MFKNRFF+PF +WG +LI+ISRKN +AFL+VF E+C+IA+ EKLDFMKPD++ACN A
Sbjct: 160 CMFKNRFFMPFRLWGDILIEISRKNDKVIAFLKVFEESCRIAIDEKLDFMKPDMDACNVA 219
Query: 363 LEGCCCELESISDAESVLETMSVLGVRPDEASFGFLAYLYSVKGVEDKIVELERLMEGFG 542
LEGCCCELES+S+AE V+ETMSVLG++PDE SFGFLAYLY++KG +DKI+EL LM GFG
Sbjct: 220 LEGCCCELESVSEAEKVIETMSVLGIKPDELSFGFLAYLYALKGFQDKIIELNGLMSGFG 279
Query: 543 VLSKRVFYSNLINGYVKSGSLQSVSEIIFHSLQEGDGHNVSFGEETYCVVVRGFLQNGNI 722
+K++F+S LI GYVKSGS ++VSE I SL+E G +++F EETYC VV+GF+++G I
Sbjct: 280 FSNKKLFFSYLIRGYVKSGSFEAVSETILRSLREQGGLDLNFSEETYCQVVKGFMKDGGI 339
Query: 723 KDLAKLIIESQKLESASIRIDSSVGFGIVTACVNLGLLDKAHSILDQMTAEGGFVGLGVY 902
K LA LIIE+QKLESA+I D S GFGI++ACVNL L DKAHSI+D+M A+GG VGLGV+
Sbjct: 340 KGLANLIIEAQKLESATIAADKSTGFGIISACVNLRLSDKAHSIVDEMDAQGGSVGLGVF 399
Query: 903 TSIVKAYCKEQRTSEAAQLVMDISASGLQLDAGSYDTLIEASMSNQDFQSAFSLFRDMRE 1082
I+KAYCKE RT+EA QLVMDIS GLQLD GSYD LIEASM++QDFQSAF+LFRDMRE
Sbjct: 400 LPILKAYCKEYRTAEATQLVMDISNKGLQLDEGSYDALIEASMTSQDFQSAFTLFRDMRE 459
Query: 1083 AKIPDLQMSYLTIMTGLTENHRPELMAAFLDEVVEDPRIEIGTHDWNSIIHAFCKAGRLE 1262
I +L+ SYLTIMTGL E RPELMAAFLDE+VEDPR+E+ THDWNSIIHAFCKAGRLE
Sbjct: 460 G-IAELKGSYLTIMTGLMEKQRPELMAAFLDEIVEDPRVEVKTHDWNSIIHAFCKAGRLE 518
Query: 1263 DARRTLRRMS 1292
DA+RT RRM+
Sbjct: 519 DAKRTFRRMT 528
>ref|XP_004135146.1| PREDICTED: pentatricopeptide repeat-containing protein At1g69290-like
[Cucumis sativus] gi|449517162|ref|XP_004165615.1|
PREDICTED: pentatricopeptide repeat-containing protein
At1g69290-like [Cucumis sativus]
Length = 656
Score = 572 bits (1474), Expect = e-161
Identities = 280/429 (65%), Positives = 354/429 (82%)
Frame = +3
Query: 3 NSLIAHLSSLKDIHNLKRAFATVVFLLEKNPSVLEYKTVETLLCSMCSANTAAPAFALVK 182
NSLIAHLSS+ D+HNLKRAFA+VVF++EK P +L++ +V+ LL SM ANTAAPA +L+K
Sbjct: 102 NSLIAHLSSIGDVHNLKRAFASVVFVIEKKPELLDFGSVKALLASMKCANTAAPALSLIK 161
Query: 183 SMFKNRFFLPFSVWGGVLIDISRKNSNFVAFLRVFNENCKIALGEKLDFMKPDLNACNAA 362
MFKNR F+PFSVWG L+DI R++ + + FLRVF ENC+IAL E+LDF+KPDL ACNAA
Sbjct: 162 CMFKNRCFVPFSVWGKELVDICRQSGSLIPFLRVFEENCRIALDERLDFLKPDLIACNAA 221
Query: 363 LEGCCCELESISDAESVLETMSVLGVRPDEASFGFLAYLYSVKGVEDKIVELERLMEGFG 542
LEGCC ELES++DAE V+ETMS+L +RPDE SFG LAYLY++KG++ KI+ELE LM FG
Sbjct: 222 LEGCCHELESVTDAEKVIETMSLLYLRPDEVSFGALAYLYALKGLDQKIIELEVLMGSFG 281
Query: 543 VLSKRVFYSNLINGYVKSGSLQSVSEIIFHSLQEGDGHNVSFGEETYCVVVRGFLQNGNI 722
K +F+SNL++GYV + + +VS+ + SL++ G +V FGE+TY +V+GF+Q+GN+
Sbjct: 282 FTCKDLFFSNLVSGYVNASNFAAVSKTMLRSLKDECGSHVHFGEKTYLEMVKGFIQSGNL 341
Query: 723 KDLAKLIIESQKLESASIRIDSSVGFGIVTACVNLGLLDKAHSILDQMTAEGGFVGLGVY 902
K+L+ LII++Q LES+S +D S+GFGI+ ACVN+G LDKA ILD+M ++G +GLGVY
Sbjct: 342 KELSALIIDAQNLESSS-AVDGSIGFGIINACVNIGWLDKAQYILDEMNSQGVSLGLGVY 400
Query: 903 TSIVKAYCKEQRTSEAAQLVMDISASGLQLDAGSYDTLIEASMSNQDFQSAFSLFRDMRE 1082
I+KAY KE RT+ A QL+MDIS+SG+QLDA +YD LIEASMSNQDFQSAF+LFR MRE
Sbjct: 401 LPILKAYRKEHRTAAATQLIMDISSSGIQLDAENYDALIEASMSNQDFQSAFTLFRSMRE 460
Query: 1083 AKIPDLQMSYLTIMTGLTENHRPELMAAFLDEVVEDPRIEIGTHDWNSIIHAFCKAGRLE 1262
+ D + SYLTIMTGL ENHRPELMAAFLDE+VEDP +E+GTHDWNSIIHAFCKAGRLE
Sbjct: 461 TRKSDTKASYLTIMTGLMENHRPELMAAFLDEIVEDPLVEVGTHDWNSIIHAFCKAGRLE 520
Query: 1263 DARRTLRRM 1289
DARRT RRM
Sbjct: 521 DARRTYRRM 529