BLASTX nr result

ID: Coptis21_contig00022414 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00022414
         (1293 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI27289.3| unnamed protein product [Vitis vinifera]              644   0.0  
ref|XP_002274151.1| PREDICTED: pentatricopeptide repeat-containi...   644   0.0  
ref|XP_002512079.1| pentatricopeptide repeat-containing protein,...   612   e-173
ref|XP_002311339.1| predicted protein [Populus trichocarpa] gi|2...   612   e-173
ref|XP_004135146.1| PREDICTED: pentatricopeptide repeat-containi...   572   e-161

>emb|CBI27289.3| unnamed protein product [Vitis vinifera]
          Length = 967

 Score =  644 bits (1661), Expect = 0.0
 Identities = 314/429 (73%), Positives = 377/429 (87%)
 Frame = +3

Query: 3    NSLIAHLSSLKDIHNLKRAFATVVFLLEKNPSVLEYKTVETLLCSMCSANTAAPAFALVK 182
            NSLIAHL+SL D++NLKRAFA+ VFLLEKNPS+L++ TV TLL SM SANTAAPAFAL+ 
Sbjct: 100  NSLIAHLASLHDLYNLKRAFASAVFLLEKNPSLLDFGTVRTLLGSMNSANTAAPAFALIN 159

Query: 183  SMFKNRFFLPFSVWGGVLIDISRKNSNFVAFLRVFNENCKIALGEKLDFMKPDLNACNAA 362
             MFKNR+F+PFS+WGGV+++I+R+N +FVAFLRVFNE C+IA+ EKL+ MKPDL+ACN A
Sbjct: 160  CMFKNRYFMPFSMWGGVIVEITRRNRSFVAFLRVFNETCRIAIDEKLESMKPDLDACNVA 219

Query: 363  LEGCCCELESISDAESVLETMSVLGVRPDEASFGFLAYLYSVKGVEDKIVELERLMEGFG 542
            LEGC  +LES+S+AE V+E MSVLG++PDE+SFGFLAYLY++KG+E+KIVELE LM GFG
Sbjct: 220  LEGCSQDLESVSEAEKVVEMMSVLGIQPDESSFGFLAYLYALKGLEEKIVELEGLMRGFG 279

Query: 543  VLSKRVFYSNLINGYVKSGSLQSVSEIIFHSLQEGDGHNVSFGEETYCVVVRGFLQNGNI 722
              SK+V YS LIN YVKSG+L+ VS  IF SL+E D    +F EETYC VV+GFLQNG+I
Sbjct: 280  FSSKKVIYSYLINAYVKSGNLEYVSRTIFRSLREDDEQGPNFSEETYCEVVKGFLQNGSI 339

Query: 723  KDLAKLIIESQKLESASIRIDSSVGFGIVTACVNLGLLDKAHSILDQMTAEGGFVGLGVY 902
            KDLA LIIE+QKLE +SI +D S+G+GI++ACV+LG LDKAHSILD+M  +G  VGLGVY
Sbjct: 340  KDLASLIIETQKLEPSSIAVDRSIGYGIISACVSLGFLDKAHSILDEMNVQGVSVGLGVY 399

Query: 903  TSIVKAYCKEQRTSEAAQLVMDISASGLQLDAGSYDTLIEASMSNQDFQSAFSLFRDMRE 1082
             SI+KA+CKE RT+EAAQLV +IS+ GLQLDAGSYD LIEASMS+QDFQSAFSLFRDMRE
Sbjct: 400  VSILKAFCKEHRTAEAAQLVTEISSLGLQLDAGSYDALIEASMSSQDFQSAFSLFRDMRE 459

Query: 1083 AKIPDLQMSYLTIMTGLTENHRPELMAAFLDEVVEDPRIEIGTHDWNSIIHAFCKAGRLE 1262
            A++PD++ SYLT+MTGLTENHRPELMAAFLDE+VEDPR+E+GTHDWNSIIHAFCK GRLE
Sbjct: 460  ARVPDMKGSYLTMMTGLTENHRPELMAAFLDEIVEDPRVEVGTHDWNSIIHAFCKVGRLE 519

Query: 1263 DARRTLRRM 1289
            DARRT RRM
Sbjct: 520  DARRTFRRM 528


>ref|XP_002274151.1| PREDICTED: pentatricopeptide repeat-containing protein At1g69290
            [Vitis vinifera]
          Length = 655

 Score =  644 bits (1661), Expect = 0.0
 Identities = 314/429 (73%), Positives = 377/429 (87%)
 Frame = +3

Query: 3    NSLIAHLSSLKDIHNLKRAFATVVFLLEKNPSVLEYKTVETLLCSMCSANTAAPAFALVK 182
            NSLIAHL+SL D++NLKRAFA+ VFLLEKNPS+L++ TV TLL SM SANTAAPAFAL+ 
Sbjct: 100  NSLIAHLASLHDLYNLKRAFASAVFLLEKNPSLLDFGTVRTLLGSMNSANTAAPAFALIN 159

Query: 183  SMFKNRFFLPFSVWGGVLIDISRKNSNFVAFLRVFNENCKIALGEKLDFMKPDLNACNAA 362
             MFKNR+F+PFS+WGGV+++I+R+N +FVAFLRVFNE C+IA+ EKL+ MKPDL+ACN A
Sbjct: 160  CMFKNRYFMPFSMWGGVIVEITRRNRSFVAFLRVFNETCRIAIDEKLESMKPDLDACNVA 219

Query: 363  LEGCCCELESISDAESVLETMSVLGVRPDEASFGFLAYLYSVKGVEDKIVELERLMEGFG 542
            LEGC  +LES+S+AE V+E MSVLG++PDE+SFGFLAYLY++KG+E+KIVELE LM GFG
Sbjct: 220  LEGCSQDLESVSEAEKVVEMMSVLGIQPDESSFGFLAYLYALKGLEEKIVELEGLMRGFG 279

Query: 543  VLSKRVFYSNLINGYVKSGSLQSVSEIIFHSLQEGDGHNVSFGEETYCVVVRGFLQNGNI 722
              SK+V YS LIN YVKSG+L+ VS  IF SL+E D    +F EETYC VV+GFLQNG+I
Sbjct: 280  FSSKKVIYSYLINAYVKSGNLEYVSRTIFRSLREDDEQGPNFSEETYCEVVKGFLQNGSI 339

Query: 723  KDLAKLIIESQKLESASIRIDSSVGFGIVTACVNLGLLDKAHSILDQMTAEGGFVGLGVY 902
            KDLA LIIE+QKLE +SI +D S+G+GI++ACV+LG LDKAHSILD+M  +G  VGLGVY
Sbjct: 340  KDLASLIIETQKLEPSSIAVDRSIGYGIISACVSLGFLDKAHSILDEMNVQGVSVGLGVY 399

Query: 903  TSIVKAYCKEQRTSEAAQLVMDISASGLQLDAGSYDTLIEASMSNQDFQSAFSLFRDMRE 1082
             SI+KA+CKE RT+EAAQLV +IS+ GLQLDAGSYD LIEASMS+QDFQSAFSLFRDMRE
Sbjct: 400  VSILKAFCKEHRTAEAAQLVTEISSLGLQLDAGSYDALIEASMSSQDFQSAFSLFRDMRE 459

Query: 1083 AKIPDLQMSYLTIMTGLTENHRPELMAAFLDEVVEDPRIEIGTHDWNSIIHAFCKAGRLE 1262
            A++PD++ SYLT+MTGLTENHRPELMAAFLDE+VEDPR+E+GTHDWNSIIHAFCK GRLE
Sbjct: 460  ARVPDMKGSYLTMMTGLTENHRPELMAAFLDEIVEDPRVEVGTHDWNSIIHAFCKVGRLE 519

Query: 1263 DARRTLRRM 1289
            DARRT RRM
Sbjct: 520  DARRTFRRM 528


>ref|XP_002512079.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223549259|gb|EEF50748.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 650

 Score =  612 bits (1578), Expect = e-173
 Identities = 303/429 (70%), Positives = 367/429 (85%)
 Frame = +3

Query: 3    NSLIAHLSSLKDIHNLKRAFATVVFLLEKNPSVLEYKTVETLLCSMCSANTAAPAFALVK 182
            NSLI HLSSL+D  NLKRAFA+V+F +EKNP  L+++TV+++L SM  AN+AAPAFALVK
Sbjct: 95   NSLITHLSSLQDTLNLKRAFASVIFFMEKNPQSLDFETVQSVLESMKFANSAAPAFALVK 154

Query: 183  SMFKNRFFLPFSVWGGVLIDISRKNSNFVAFLRVFNENCKIALGEKLDFMKPDLNACNAA 362
             MFK+R+F+PF +WGG++  IS+KN  FVAFL+VF E+ +IA+ EKLDFMKPDL ACN A
Sbjct: 155  CMFKHRYFMPFHLWGGLIGHISKKNGMFVAFLKVFEESYRIAVDEKLDFMKPDLGACNLA 214

Query: 363  LEGCCCELESISDAESVLETMSVLGVRPDEASFGFLAYLYSVKGVEDKIVELERLMEGFG 542
            LE CC E+ES+SDA++V+E MSVLG++PDE SFGFLAYLY++KG++D+IVEL+ LMEGF 
Sbjct: 215  LECCCEEIESVSDADNVIEIMSVLGIKPDEMSFGFLAYLYALKGLQDRIVELKSLMEGFS 274

Query: 543  VLSKRVFYSNLINGYVKSGSLQSVSEIIFHSLQEGDGHNVSFGEETYCVVVRGFLQNGNI 722
            VL+KR+FYSNLI GYVKSG+L+SVS  I  SL+E D  N +  EETYC VV+GFL++G++
Sbjct: 275  VLNKRLFYSNLIRGYVKSGNLESVSATIICSLREEDEKNYNINEETYCEVVKGFLKDGSL 334

Query: 723  KDLAKLIIESQKLESASIRIDSSVGFGIVTACVNLGLLDKAHSILDQMTAEGGFVGLGVY 902
            K LA LIIE++KLE  SI ID S+ FG++ ACVNLGL DKAHSILD+M A+GG VG GVY
Sbjct: 335  KGLANLIIEARKLEPDSIEIDKSISFGVINACVNLGLSDKAHSILDEMDAKGGSVGFGVY 394

Query: 903  TSIVKAYCKEQRTSEAAQLVMDISASGLQLDAGSYDTLIEASMSNQDFQSAFSLFRDMRE 1082
              I+KAYCKE RT+EA QLVM+IS  GLQLDAGSYD LIEASM++QDFQSAF+LFRDMRE
Sbjct: 395  VPILKAYCKEGRTAEATQLVMEISNLGLQLDAGSYDALIEASMTSQDFQSAFTLFRDMRE 454

Query: 1083 AKIPDLQMSYLTIMTGLTENHRPELMAAFLDEVVEDPRIEIGTHDWNSIIHAFCKAGRLE 1262
            ++ PDL+ SYLTIMTGL ENHRPELMAAFLDEVVEDPRIE+ THDWNSIIHAFCKAGRLE
Sbjct: 455  SRSPDLKGSYLTIMTGLMENHRPELMAAFLDEVVEDPRIEVKTHDWNSIIHAFCKAGRLE 514

Query: 1263 DARRTLRRM 1289
            DA+RT RRM
Sbjct: 515  DAKRTFRRM 523


>ref|XP_002311339.1| predicted protein [Populus trichocarpa] gi|222851159|gb|EEE88706.1|
            predicted protein [Populus trichocarpa]
          Length = 654

 Score =  612 bits (1577), Expect = e-173
 Identities = 299/430 (69%), Positives = 363/430 (84%)
 Frame = +3

Query: 3    NSLIAHLSSLKDIHNLKRAFATVVFLLEKNPSVLEYKTVETLLCSMCSANTAAPAFALVK 182
            NSLI HLSSL D  NLKRAFA++V+++EKNP  L+++TV+  L SM  ANTAAPAFAL+K
Sbjct: 100  NSLITHLSSLNDTINLKRAFASIVYVIEKNPKSLDFETVQLFLGSMVRANTAAPAFALIK 159

Query: 183  SMFKNRFFLPFSVWGGVLIDISRKNSNFVAFLRVFNENCKIALGEKLDFMKPDLNACNAA 362
             MFKNRFF+PF +WG +LI+ISRKN   +AFL+VF E+C+IA+ EKLDFMKPD++ACN A
Sbjct: 160  CMFKNRFFMPFRLWGDILIEISRKNDKVIAFLKVFEESCRIAIDEKLDFMKPDMDACNVA 219

Query: 363  LEGCCCELESISDAESVLETMSVLGVRPDEASFGFLAYLYSVKGVEDKIVELERLMEGFG 542
            LEGCCCELES+S+AE V+ETMSVLG++PDE SFGFLAYLY++KG +DKI+EL  LM GFG
Sbjct: 220  LEGCCCELESVSEAEKVIETMSVLGIKPDELSFGFLAYLYALKGFQDKIIELNGLMSGFG 279

Query: 543  VLSKRVFYSNLINGYVKSGSLQSVSEIIFHSLQEGDGHNVSFGEETYCVVVRGFLQNGNI 722
              +K++F+S LI GYVKSGS ++VSE I  SL+E  G +++F EETYC VV+GF+++G I
Sbjct: 280  FSNKKLFFSYLIRGYVKSGSFEAVSETILRSLREQGGLDLNFSEETYCQVVKGFMKDGGI 339

Query: 723  KDLAKLIIESQKLESASIRIDSSVGFGIVTACVNLGLLDKAHSILDQMTAEGGFVGLGVY 902
            K LA LIIE+QKLESA+I  D S GFGI++ACVNL L DKAHSI+D+M A+GG VGLGV+
Sbjct: 340  KGLANLIIEAQKLESATIAADKSTGFGIISACVNLRLSDKAHSIVDEMDAQGGSVGLGVF 399

Query: 903  TSIVKAYCKEQRTSEAAQLVMDISASGLQLDAGSYDTLIEASMSNQDFQSAFSLFRDMRE 1082
              I+KAYCKE RT+EA QLVMDIS  GLQLD GSYD LIEASM++QDFQSAF+LFRDMRE
Sbjct: 400  LPILKAYCKEYRTAEATQLVMDISNKGLQLDEGSYDALIEASMTSQDFQSAFTLFRDMRE 459

Query: 1083 AKIPDLQMSYLTIMTGLTENHRPELMAAFLDEVVEDPRIEIGTHDWNSIIHAFCKAGRLE 1262
              I +L+ SYLTIMTGL E  RPELMAAFLDE+VEDPR+E+ THDWNSIIHAFCKAGRLE
Sbjct: 460  G-IAELKGSYLTIMTGLMEKQRPELMAAFLDEIVEDPRVEVKTHDWNSIIHAFCKAGRLE 518

Query: 1263 DARRTLRRMS 1292
            DA+RT RRM+
Sbjct: 519  DAKRTFRRMT 528


>ref|XP_004135146.1| PREDICTED: pentatricopeptide repeat-containing protein At1g69290-like
            [Cucumis sativus] gi|449517162|ref|XP_004165615.1|
            PREDICTED: pentatricopeptide repeat-containing protein
            At1g69290-like [Cucumis sativus]
          Length = 656

 Score =  572 bits (1474), Expect = e-161
 Identities = 280/429 (65%), Positives = 354/429 (82%)
 Frame = +3

Query: 3    NSLIAHLSSLKDIHNLKRAFATVVFLLEKNPSVLEYKTVETLLCSMCSANTAAPAFALVK 182
            NSLIAHLSS+ D+HNLKRAFA+VVF++EK P +L++ +V+ LL SM  ANTAAPA +L+K
Sbjct: 102  NSLIAHLSSIGDVHNLKRAFASVVFVIEKKPELLDFGSVKALLASMKCANTAAPALSLIK 161

Query: 183  SMFKNRFFLPFSVWGGVLIDISRKNSNFVAFLRVFNENCKIALGEKLDFMKPDLNACNAA 362
             MFKNR F+PFSVWG  L+DI R++ + + FLRVF ENC+IAL E+LDF+KPDL ACNAA
Sbjct: 162  CMFKNRCFVPFSVWGKELVDICRQSGSLIPFLRVFEENCRIALDERLDFLKPDLIACNAA 221

Query: 363  LEGCCCELESISDAESVLETMSVLGVRPDEASFGFLAYLYSVKGVEDKIVELERLMEGFG 542
            LEGCC ELES++DAE V+ETMS+L +RPDE SFG LAYLY++KG++ KI+ELE LM  FG
Sbjct: 222  LEGCCHELESVTDAEKVIETMSLLYLRPDEVSFGALAYLYALKGLDQKIIELEVLMGSFG 281

Query: 543  VLSKRVFYSNLINGYVKSGSLQSVSEIIFHSLQEGDGHNVSFGEETYCVVVRGFLQNGNI 722
               K +F+SNL++GYV + +  +VS+ +  SL++  G +V FGE+TY  +V+GF+Q+GN+
Sbjct: 282  FTCKDLFFSNLVSGYVNASNFAAVSKTMLRSLKDECGSHVHFGEKTYLEMVKGFIQSGNL 341

Query: 723  KDLAKLIIESQKLESASIRIDSSVGFGIVTACVNLGLLDKAHSILDQMTAEGGFVGLGVY 902
            K+L+ LII++Q LES+S  +D S+GFGI+ ACVN+G LDKA  ILD+M ++G  +GLGVY
Sbjct: 342  KELSALIIDAQNLESSS-AVDGSIGFGIINACVNIGWLDKAQYILDEMNSQGVSLGLGVY 400

Query: 903  TSIVKAYCKEQRTSEAAQLVMDISASGLQLDAGSYDTLIEASMSNQDFQSAFSLFRDMRE 1082
              I+KAY KE RT+ A QL+MDIS+SG+QLDA +YD LIEASMSNQDFQSAF+LFR MRE
Sbjct: 401  LPILKAYRKEHRTAAATQLIMDISSSGIQLDAENYDALIEASMSNQDFQSAFTLFRSMRE 460

Query: 1083 AKIPDLQMSYLTIMTGLTENHRPELMAAFLDEVVEDPRIEIGTHDWNSIIHAFCKAGRLE 1262
             +  D + SYLTIMTGL ENHRPELMAAFLDE+VEDP +E+GTHDWNSIIHAFCKAGRLE
Sbjct: 461  TRKSDTKASYLTIMTGLMENHRPELMAAFLDEIVEDPLVEVGTHDWNSIIHAFCKAGRLE 520

Query: 1263 DARRTLRRM 1289
            DARRT RRM
Sbjct: 521  DARRTYRRM 529


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