BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00022327
         (335 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278241.1| PREDICTED: pentatricopeptide repeat-containi...   162   2e-38
ref|XP_002306200.1| predicted protein [Populus trichocarpa] gi|2...   154   5e-36
ref|NP_195239.1| pentatricopeptide repeat-containing protein [Ar...   141   6e-32
ref|XP_002867090.1| pentatricopeptide repeat-containing protein ...   135   4e-30
gb|ABF93859.1| pentatricopeptide, putative, expressed [Oryza sat...   122   2e-26

>ref|XP_002278241.1| PREDICTED: pentatricopeptide repeat-containing protein At4g35130,
           chloroplastic [Vitis vinifera]
           gi|297744563|emb|CBI37825.3| unnamed protein product
           [Vitis vinifera]
          Length = 802

 Score =  162 bits (411), Expect = 2e-38
 Identities = 75/110 (68%), Positives = 89/110 (80%)
 Frame = +2

Query: 5   DNFTFPFVIKSCVGMLSLSEGWKVHGNVIKSGYESDVYICNSLIAMYAKLGCLESAERVF 184
           DNFT+PFVIK+C G+  L+EG +VHG VIKSG + D+YI NSLI MYAK+GC+ESAE VF
Sbjct: 125 DNFTYPFVIKACGGLYDLAEGERVHGKVIKSGLDLDIYIGNSLIIMYAKIGCIESAEMVF 184

Query: 185 DEMPVKDLVSWNSMTSGYVVSGDGWNSLSCFKEMQVEGMRADRFGIISAL 334
            EMPV+DLVSWNSM SGYV  GDGW SLSCF+EMQ  G++ DRF +I  L
Sbjct: 185 REMPVRDLVSWNSMISGYVSVGDGWRSLSCFREMQASGIKLDRFSVIGIL 234



 Score = 73.6 bits (179), Expect = 2e-11
 Identities = 36/110 (32%), Positives = 59/110 (53%)
 Frame = +2

Query: 5   DNFTFPFVIKSCVGMLSLSEGWKVHGNVIKSGYESDVYICNSLIAMYAKLGCLESAERVF 184
           D  T   ++ +   + SL E  ++HG V K   +S+ ++ NS++ MY K G L  A  +F
Sbjct: 429 DATTIASILPAYAELASLREAEQIHGYVTKLKLDSNTFVSNSIVFMYGKCGNLLRAREIF 488

Query: 185 DEMPVKDLVSWNSMTSGYVVSGDGWNSLSCFKEMQVEGMRADRFGIISAL 334
           D M  KD++SWN++   Y + G G  S+  F EM+ +G   +    +S L
Sbjct: 489 DRMTFKDVISWNTVIMAYAIHGFGRISIELFSEMREKGFEPNGSTFVSLL 538



 Score = 67.0 bits (162), Expect = 1e-09
 Identities = 33/98 (33%), Positives = 58/98 (59%)
 Frame = +2

Query: 5   DNFTFPFVIKSCVGMLSLSEGWKVHGNVIKSGYESDVYICNSLIAMYAKLGCLESAERVF 184
           D F+   ++ +C     L  G ++H  +++S  E DV +  SL+ MYAK G ++ AER+F
Sbjct: 226 DRFSVIGILGACSLEGFLRNGKEIHCQMMRSRLELDVMVQTSLVDMYAKCGRMDYAERLF 285

Query: 185 DEMPVKDLVSWNSMTSGYVVSGDGWNSLSCFKEMQVEG 298
           D++  K +V+WN+M  GY ++   + S +  ++MQ  G
Sbjct: 286 DQITDKSIVAWNAMIGGYSLNAQSFESFAYVRKMQEGG 323



 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 30/110 (27%), Positives = 62/110 (56%)
 Frame = +2

Query: 5   DNFTFPFVIKSCVGMLSLSEGWKVHGNVIKSGYESDVYICNSLIAMYAKLGCLESAERVF 184
           D  T   ++  C  + ++  G  VHG  I++G+   + +  +L+ MY + G L+ AE +F
Sbjct: 328 DWITMINLLPPCAQLEAILLGKSVHGFAIRNGFLPHLVLETALVDMYGECGKLKPAECLF 387

Query: 185 DEMPVKDLVSWNSMTSGYVVSGDGWNSLSCFKEMQVEGMRADRFGIISAL 334
            +M  ++L+SWN+M + Y  +G+   +++ F+++  + ++ D   I S L
Sbjct: 388 GQMNERNLISWNAMIASYTKNGENRKAMTLFQDLCNKTLKPDATTIASIL 437


>ref|XP_002306200.1| predicted protein [Populus trichocarpa] gi|222849164|gb|EEE86711.1|
           predicted protein [Populus trichocarpa]
          Length = 784

 Score =  154 bits (390), Expect = 5e-36
 Identities = 74/111 (66%), Positives = 89/111 (80%)
 Frame = +2

Query: 2   SDNFTFPFVIKSCVGMLSLSEGWKVHGNVIKSGYESDVYICNSLIAMYAKLGCLESAERV 181
           SDNFTFPFVIK+C  +L+L  G KVHG +IK G++ DVY+CN LI MY K+G +E AE+V
Sbjct: 122 SDNFTFPFVIKACGELLALMVGQKVHGKLIKIGFDLDVYVCNFLIDMYLKIGFIELAEKV 181

Query: 182 FDEMPVKDLVSWNSMTSGYVVSGDGWNSLSCFKEMQVEGMRADRFGIISAL 334
           FDEMPV+DLVSWNSM SGY + GDG +SL CFKEM   G +ADRFG+ISAL
Sbjct: 182 FDEMPVRDLVSWNSMVSGYQIDGDGLSSLMCFKEMLRLGNKADRFGMISAL 232



 Score = 80.5 bits (197), Expect = 1e-13
 Identities = 40/110 (36%), Positives = 63/110 (57%)
 Frame = +2

Query: 5   DNFTFPFVIKSCVGMLSLSEGWKVHGNVIKSGYESDVYICNSLIAMYAKLGCLESAERVF 184
           D  T   V+ +   + S SEG ++H  ++K G  S+ +I N+++ MYAK G L++A   F
Sbjct: 411 DAITIASVLPAVAELASRSEGKQIHSYIMKLGLGSNTFISNAIVYMYAKCGDLQTAREFF 470

Query: 185 DEMPVKDLVSWNSMTSGYVVSGDGWNSLSCFKEMQVEGMRADRFGIISAL 334
           D M  KD+VSWN+M   Y + G G  S+  F EM+ +G + +    +S L
Sbjct: 471 DGMVCKDVVSWNTMIMAYAIHGFGRTSIQFFSEMRGKGFKPNGSTFVSLL 520



 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 36/110 (32%), Positives = 59/110 (53%)
 Frame = +2

Query: 5   DNFTFPFVIKSCVGMLSLSEGWKVHGNVIKSGYESDVYICNSLIAMYAKLGCLESAERVF 184
           D  T   ++ SC    +L EG  +HG  I+  +   + +  +L+ MY K G L+ AE VF
Sbjct: 310 DVITMINLLPSCSQSGALLEGKSIHGFAIRKMFLPYLVLETALVDMYGKCGELKLAEHVF 369

Query: 185 DEMPVKDLVSWNSMTSGYVVSGDGWNSLSCFKEMQVEGMRADRFGIISAL 334
           ++M  K++VSWN+M + YV +     +L  F+ +  E ++ D   I S L
Sbjct: 370 NQMNEKNMVSWNTMVAAYVQNEQYKEALKMFQHILNEPLKPDAITIASVL 419



 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 29/78 (37%), Positives = 45/78 (57%)
 Frame = +2

Query: 2   SDNFTFPFVIKSCVGMLSLSEGWKVHGNVIKSGYESDVYICNSLIAMYAKLGCLESAERV 181
           +D F     + +C     L  G ++H  VI+S  E D+ +  SLI MY K G ++ AERV
Sbjct: 223 ADRFGMISALGACSIEHCLRSGMEIHCQVIRSELELDIMVQTSLIDMYGKCGKVDYAERV 282

Query: 182 FDEMPVKDLVSWNSMTSG 235
           F+ +  K++V+WN+M  G
Sbjct: 283 FNRIYSKNIVAWNAMIGG 300


>ref|NP_195239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75098809|sp|O49619.1|PP350_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At4g35130, chloroplastic; Flags: Precursor
           gi|2924523|emb|CAA17777.1| putative protein [Arabidopsis
           thaliana] gi|7270464|emb|CAB80230.1| putative protein
           [Arabidopsis thaliana] gi|332661071|gb|AEE86471.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 804

 Score =  141 bits (355), Expect = 6e-32
 Identities = 67/111 (60%), Positives = 84/111 (75%)
 Frame = +2

Query: 2   SDNFTFPFVIKSCVGMLSLSEGWKVHGNVIKSGYESDVYICNSLIAMYAKLGCLESAERV 181
           +D FT+PFVIKS  G+ SL EG K+H  VIK G+ SDVY+CNSLI++Y KLGC   AE+V
Sbjct: 128 ADTFTYPFVIKSVAGISSLEEGKKIHAMVIKLGFVSDVYVCNSLISLYMKLGCAWDAEKV 187

Query: 182 FDEMPVKDLVSWNSMTSGYVVSGDGWNSLSCFKEMQVEGMRADRFGIISAL 334
           F+EMP +D+VSWNSM SGY+  GDG++SL  FKEM   G + DRF  +SAL
Sbjct: 188 FEEMPERDIVSWNSMISGYLALGDGFSSLMLFKEMLKCGFKPDRFSTMSAL 238



 Score = 76.6 bits (187), Expect = 2e-12
 Identities = 40/94 (42%), Positives = 57/94 (60%)
 Frame = +2

Query: 5   DNFTFPFVIKSCVGMLSLSEGWKVHGNVIKSGYESDVYICNSLIAMYAKLGCLESAERVF 184
           D+ T   ++ +    LSLSEG ++H  ++KS Y S+  I NSL+ MYA  G LE A + F
Sbjct: 430 DSTTIASILPAYAESLSLSEGREIHAYIVKSRYWSNTIILNSLVHMYAMCGDLEDARKCF 489

Query: 185 DEMPVKDLVSWNSMTSGYVVSGDGWNSLSCFKEM 286
           + + +KD+VSWNS+   Y V G G  S+  F EM
Sbjct: 490 NHILLKDVVSWNSIIMAYAVHGFGRISVWLFSEM 523



 Score = 65.1 bits (157), Expect = 6e-09
 Identities = 32/94 (34%), Positives = 56/94 (59%)
 Frame = +2

Query: 53  SLSEGWKVHGNVIKSGYESDVYICNSLIAMYAKLGCLESAERVFDEMPVKDLVSWNSMTS 232
           ++ EG  +HG  ++ G+   + +  +LI MY + G L+SAE +FD M  K+++SWNS+ +
Sbjct: 345 AILEGRTIHGYAMRRGFLPHMVLETALIDMYGECGQLKSAEVIFDRMAEKNVISWNSIIA 404

Query: 233 GYVVSGDGWNSLSCFKEMQVEGMRADRFGIISAL 334
            YV +G  +++L  F+E+    +  D   I S L
Sbjct: 405 AYVQNGKNYSALELFQELWDSSLVPDSTTIASIL 438



 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 33/112 (29%), Positives = 63/112 (56%), Gaps = 2/112 (1%)
 Frame = +2

Query: 5   DNFTFPFVIKSCVGMLSLSEGWKVHGNVIKSGYES-DVYICNSLIAMYAKLGCLESAERV 181
           D F+    + +C  + S   G ++H + ++S  E+ DV +  S++ MY+K G +  AER+
Sbjct: 230 DRFSTMSALGACSHVYSPKMGKEIHCHAVRSRIETGDVMVMTSILDMYSKYGEVSYAERI 289

Query: 182 FDEMPVKDLVSWNSMTSGYVVSGDGWNSLSCFKEM-QVEGMRADRFGIISAL 334
           F+ M  +++V+WN M   Y  +G   ++  CF++M +  G++ D    I+ L
Sbjct: 290 FNGMIQRNIVAWNVMIGCYARNGRVTDAFLCFQKMSEQNGLQPDVITSINLL 341


>ref|XP_002867090.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297312926|gb|EFH43349.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 803

 Score =  135 bits (339), Expect = 4e-30
 Identities = 65/111 (58%), Positives = 82/111 (73%)
 Frame = +2

Query: 2   SDNFTFPFVIKSCVGMLSLSEGWKVHGNVIKSGYESDVYICNSLIAMYAKLGCLESAERV 181
           +D+FT+PFVIKS  G+ SL EG K+H  VIK  + SDVY+CNSLI++Y KLGC   AE+V
Sbjct: 124 ADSFTYPFVIKSVTGISSLEEGKKIHAMVIKLRFVSDVYVCNSLISLYMKLGCSWDAEKV 183

Query: 182 FDEMPVKDLVSWNSMTSGYVVSGDGWNSLSCFKEMQVEGMRADRFGIISAL 334
           F+EMP +D+VSWNSM SGY+   DG+ SL  FKEM   G + DRF  +SAL
Sbjct: 184 FEEMPERDIVSWNSMISGYLALEDGFRSLMLFKEMLKFGFKPDRFSTMSAL 234



 Score = 77.8 bits (190), Expect = 8e-13
 Identities = 40/94 (42%), Positives = 57/94 (60%)
 Frame = +2

Query: 5   DNFTFPFVIKSCVGMLSLSEGWKVHGNVIKSGYESDVYICNSLIAMYAKLGCLESAERVF 184
           D+ T   ++ +    LSLSEG ++H  ++KS Y S+  I NSL+ MYA  G LE A + F
Sbjct: 426 DSTTIASILPAYAESLSLSEGRQIHAYIVKSRYGSNTIILNSLVHMYAMCGDLEDARKCF 485

Query: 185 DEMPVKDLVSWNSMTSGYVVSGDGWNSLSCFKEM 286
           + + +KD+VSWNS+   Y V G G  S+  F EM
Sbjct: 486 NHVLLKDVVSWNSIIMAYAVHGFGRISVCLFSEM 519



 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 31/94 (32%), Positives = 56/94 (59%)
 Frame = +2

Query: 53  SLSEGWKVHGNVIKSGYESDVYICNSLIAMYAKLGCLESAERVFDEMPVKDLVSWNSMTS 232
           ++ EG  +HG  ++ G+   + +  +LI MY + G L+SAE +FD +  K+L+SWNS+ +
Sbjct: 341 AILEGRTIHGYAMRRGFLPHIVLDTALIDMYGEWGQLKSAEVIFDRIAEKNLISWNSIIA 400

Query: 233 GYVVSGDGWNSLSCFKEMQVEGMRADRFGIISAL 334
            YV +G  +++L  F+++    +  D   I S L
Sbjct: 401 AYVQNGKNYSALELFQKLWDSSLLPDSTTIASIL 434


>gb|ABF93859.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group] gi|125584837|gb|EAZ25501.1| hypothetical protein
           OsJ_09324 [Oryza sativa Japonica Group]
          Length = 781

 Score =  122 bits (307), Expect = 2e-26
 Identities = 62/111 (55%), Positives = 77/111 (69%), Gaps = 1/111 (0%)
 Frame = +2

Query: 5   DNFTFPFVIKSCVGMLSLSEGWKVHGNVIKSGYESDVYICNSLIAMYAKLGCLESAERVF 184
           D FTFP V+K C  +  L EG   HG VIK G E DVY CNSL+A YAKLG +E AERVF
Sbjct: 106 DRFTFPVVVKCCARLGGLDEGRAAHGMVIKLGLEHDVYTCNSLVAFYAKLGLVEDAERVF 165

Query: 185 DEMPVKDLVSWNSMTSGYVVSGDGWNSLSCFKEM-QVEGMRADRFGIISAL 334
           D MPV+D+V+WN+M  GYV +G G  +L+CF+EM     ++ D  GII+AL
Sbjct: 166 DGMPVRDIVTWNTMVDGYVSNGLGSLALACFQEMHDALEVQHDSVGIIAAL 216



 Score = 77.0 bits (188), Expect = 1e-12
 Identities = 37/110 (33%), Positives = 63/110 (57%)
 Frame = +2

Query: 5   DNFTFPFVIKSCVGMLSLSEGWKVHGNVIKSGYESDVYICNSLIAMYAKLGCLESAERVF 184
           D FT   V+ + V + SL    ++H  +I  GY  +  I N+++ MYA+ G + ++  +F
Sbjct: 410 DYFTMSTVVPAFVLLGSLRHCRQIHSYIIGLGYAENTLIMNAVLHMYARSGDVVASREIF 469

Query: 185 DEMPVKDLVSWNSMTSGYVVSGDGWNSLSCFKEMQVEGMRADRFGIISAL 334
           D+M  KD++SWN+M  GY + G G  +L  F EM+  G++ +    +S L
Sbjct: 470 DKMVSKDVISWNTMIMGYAIHGQGKTALEMFDEMKYNGLQPNESTFVSVL 519



 Score = 70.9 bits (172), Expect = 1e-10
 Identities = 34/102 (33%), Positives = 58/102 (56%)
 Frame = +2

Query: 29  IKSCVGMLSLSEGWKVHGNVIKSGYESDVYICNSLIAMYAKLGCLESAERVFDEMPVKDL 208
           + +C   +S  +G ++HG VI+ G E D+ +  SL+ MY K G +  A  VF  MP++ +
Sbjct: 216 LAACCLEVSSMQGKEIHGYVIRHGLEQDIKVGTSLLDMYCKCGEVAYARSVFATMPLRTV 275

Query: 209 VSWNSMTSGYVVSGDGWNSLSCFKEMQVEGMRADRFGIISAL 334
           V+WN M  GY ++     +  CF +M+ EG++ +    I+ L
Sbjct: 276 VTWNCMIGGYALNERPDEAFDCFMQMRAEGLQVEVVTAINLL 317



 Score = 55.8 bits (133), Expect = 3e-06
 Identities = 29/97 (29%), Positives = 54/97 (55%)
 Frame = +2

Query: 26  VIKSCVGMLSLSEGWKVHGNVIKSGYESDVYICNSLIAMYAKLGCLESAERVFDEMPVKD 205
           ++ +C    S   G  VHG V++  +   V +  +L+ MY K+G +ES+E++F ++  K 
Sbjct: 316 LLAACAQTESSLYGRSVHGYVVRRQFLPHVVLETALLEMYGKVGKVESSEKIFGKIANKT 375

Query: 206 LVSWNSMTSGYVVSGDGWNSLSCFKEMQVEGMRADRF 316
           LVSWN+M + Y+       +++ F E+  + +  D F
Sbjct: 376 LVSWNNMIAAYMYKEMYTEAITLFLELLNQPLYPDYF 412