BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00022231
         (960 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AEJ07916.1| putative ZmL1 non-LTR retrotransposon protein [Ze...   109   8e-22
emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulga...   109   1e-21
gb|ABA98491.1| retrotransposon protein, putative, unclassified [...   103   5e-20
gb|AAM18736.1|AC092548_14 putative reverse transcriptase [Oryza ...   103   8e-20
gb|AAP53315.2| retrotransposon protein, putative, unclassified [...   103   8e-20

>gb|AEJ07916.1| putative ZmL1 non-LTR retrotransposon protein [Zea mays]
          Length = 472

 Score =  109 bits (273), Expect = 8e-22
 Identities = 64/210 (30%), Positives = 99/210 (47%), Gaps = 7/210 (3%)
 Frame = -3

Query: 946 SYLWRGICKHLHVVQNNIMWSVGDGSSISLFSDPWLSHGDKPXXXXXXXXXXXXXXXLKV 767
           SY WR + K LH+++  ++W +GDG+ ++++ DPW+  G+                  KV
Sbjct: 12  SYTWRNVLKGLHLLKEGLIWRIGDGNQVNIWVDPWIPRGE----TRRVITPRNGSLLHKV 67

Query: 766 KHLIILGTSS*DLHRVGEMFPSPVSYAISLIPIRPNVKKDSLVWIKSKKGDFSVRSAHMA 587
             LI   T S D   V + F    +  I  IPI+  + +D+L W    KG+FSV+SA+  
Sbjct: 68  AELIDPITGSWDCRLVRDTFLQEDADCILAIPIQEGM-EDTLAWHGDPKGNFSVKSAYAL 126

Query: 586 LLREEDH-------GQCSSQDLSLVKRIWKLKVDARTQLFTWKLLMNGLLTRENLLRR*F 428
             R  DH          S +  ++ K IW + V  + ++F W+L  N    R N+ RR  
Sbjct: 127 ASRRRDHHNNADASSSISGRGENVWKSIWNVNVTNKIKMFLWRLAHNSHPVRVNIARRGI 186

Query: 427 KGDVTCRFCLKEIETDFHLFFSCDWTKSLW 338
           K +  C  C +  E   HLF  C   K +W
Sbjct: 187 KIETLCPMCFRLDEDGGHLFLKCKKVKQVW 216


>emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1369

 Score =  109 bits (272), Expect = 1e-21
 Identities = 80/297 (26%), Positives = 131/297 (44%), Gaps = 3/297 (1%)
 Frame = -3

Query: 955  PNCSYLWRGICKHLHVVQNNIMWSVGDGSSISLFSDPWLSHGDKPXXXXXXXXXXXXXXX 776
            PN S+  + I     V+Q  +   +GDG   +++ DPW+   ++                
Sbjct: 911  PNMSFTCKSILSARAVIQKGMCRVIGDGRDTTIWGDPWVPSLER-YSIAATEGVSEDDGP 969

Query: 775  LKVKHLIILGTSS*DLHRVGEMFPSPVSYAISLIPIRPNVKKDSLVWIKSKKGDFSVRSA 596
             KV  LI       ++  +  +F    S AI  IP+    K D  +W+ SK G F+VRSA
Sbjct: 970  QKVCELI--SNDRWNVELLNTLFQPWESTAIQRIPVALQKKPDQWMWMMSKNGQFTVRSA 1027

Query: 595  HM-ALLREEDHGQCSSQ--DLSLVKRIWKLKVDARTQLFTWKLLMNGLLTRENLLRR*FK 425
            +   LL +   G  +S+  +L L ++IWK K+  + +LF+WK + NGL    N+ +R   
Sbjct: 1028 YYHELLEDRKTGPSTSRGPNLKLWQKIWKAKIPPKVKLFSWKAIHNGLAVYTNMRKRGMN 1087

Query: 424  GDVTCRFCLKEIETDFHLFFSCDWTKSLWFASPAAIKIDAMNITCCKEGIELFLKWIGTD 245
             D  C  C ++ ET  HL + CD +   W+ SP  I    +     +  +E  L     D
Sbjct: 1088 IDGACPRCGEKEETTEHLIWGCDESSRAWYISPLRIHTGNIEAGSFRIWVESLL-----D 1142

Query: 244  YHEVHNRGLYGLIMLQEIWMHRNKVIFERVNSSMSAVWNGWQSNLKTYEVESEAMNP 74
             H+         ++   IW+ RNK +FE+   +   V       +  +E E    +P
Sbjct: 1143 THKDTEWWALFWMICWNIWLGRNKWVFEKKKLAFQEVVERAVRGVMEFEEECAHTSP 1199


>gb|ABA98491.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1621

 Score =  103 bits (258), Expect = 5e-20
 Identities = 79/273 (28%), Positives = 117/273 (42%), Gaps = 12/273 (4%)
 Frame = -3

Query: 952  NCSYLWRGICKHLHVVQNNIMWSVGDGSSISLFSDPWLSHGDKPXXXXXXXXXXXXXXXL 773
            N SY WR I K L V+QN ++W VGDGS I++++DPW+  G                   
Sbjct: 1159 NVSYTWRSIQKGLRVLQNGMIWRVGDGSKINIWADPWIPRG----WSRKPMTPRGANLVT 1214

Query: 772  KVKHLIILGTSS*DLHRVGEMFPSPVSYAISLIPIRPNVKKDSLVWIKSKKGDFSVRSAH 593
            KV+ LI   T + D   + + F      AI  IP+   + +D L W    +G F+V+SA+
Sbjct: 1215 KVEELIDPYTGTWDEDLLSQTFWEEDVAAIKSIPVHVEM-EDVLAWHFDARGCFTVKSAY 1273

Query: 592  MA---LLREEDHGQC------SSQDLSLVKRIWKLKVDARTQLFTWKLLMNGLLTRENLL 440
                 + R      C       S D    K++WKL V  + + F W++  N L  R NL 
Sbjct: 1274 KVQREMERRASRNGCPGVSNWESGDDDFWKKLWKLGVPGKIKHFLWRMCHNTLALRANLH 1333

Query: 439  RR*FKGDVTCRFCLKEIETDFHLFFSCDWTKSLWFASPAAIKIDAMNITCCKEGIELFLK 260
             R    D  C  C +  E   HLFF C   K +W          A+N+   +  +E    
Sbjct: 1334 HRGMDVDTRCVMCGRYNEDAGHLFFKCKPVKKVW---------QALNLEELRSMLEQQTS 1384

Query: 259  W---IGTDYHEVHNRGLYGLIMLQEIWMHRNKV 170
                + + Y    N     ++ L + W  RN+V
Sbjct: 1385 GKNVLQSIYCRPENERTSAIVCLWQWWKERNEV 1417


>gb|AAM18736.1|AC092548_14 putative reverse transcriptase [Oryza sativa Japonica Group]
          Length = 1509

 Score =  103 bits (256), Expect = 8e-20
 Identities = 82/286 (28%), Positives = 120/286 (41%), Gaps = 12/286 (4%)
 Frame = -3

Query: 952  NCSYLWRGICKHLHVVQNNIMWSVGDGSSISLFSDPWLSHGDKPXXXXXXXXXXXXXXXL 773
            N SY WR I K L V+QN ++W VGDGS I++++DPW+  G                   
Sbjct: 1104 NVSYTWRSIQKGLRVLQNGMIWRVGDGSKINIWADPWIPRG----WSRKPMTPRGANLVT 1159

Query: 772  KVKHLIILGTSS*DLHRVGEMFPSPVSYAISLIPIRPNVKKDSLVWIKSKKGDFSVRSAH 593
            KV+ LI   T + D   + + F      AI  IP+   + +D L W    +G F+V+SA+
Sbjct: 1160 KVEELIDPYTGTWDEDLLSQTFWEEDVAAIKSIPVHVEM-EDVLAWHFDARGCFTVKSAY 1218

Query: 592  MA---LLREEDHGQC------SSQDLSLVKRIWKLKVDARTQLFTWKLLMNGLLTRENLL 440
                 + R      C       S D    K++WKL V  + + F W++  N L  R NL 
Sbjct: 1219 KVQREMERRASRNGCPGVSNWESGDDDFWKKLWKLGVPGKIKHFLWRMCHNTLALRANLH 1278

Query: 439  RR*FKGDVTCRFCLKEIETDFHLFFSCDWTKSLWFASPAAIKIDAMNITCCKEGIELFLK 260
             R    D  C  C +  E   HLFF C   K +W          A+N+   +  +E    
Sbjct: 1279 HRGMDVDTRCVMCGRYNEDAGHLFFKCKPVKKVW---------QALNLEELRSMLEQQTS 1329

Query: 259  W---IGTDYHEVHNRGLYGLIMLQEIWMHRNKVIFERVNSSMSAVW 131
                + + Y    N     ++ L + W  RN+    R      AVW
Sbjct: 1330 GKNVLQSIYCRPENERTSAIVCLWQWWKERNEEKSPRTGE--CAVW 1373


>gb|AAP53315.2| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1505

 Score =  103 bits (256), Expect = 8e-20
 Identities = 82/286 (28%), Positives = 120/286 (41%), Gaps = 12/286 (4%)
 Frame = -3

Query: 952  NCSYLWRGICKHLHVVQNNIMWSVGDGSSISLFSDPWLSHGDKPXXXXXXXXXXXXXXXL 773
            N SY WR I K L V+QN ++W VGDGS I++++DPW+  G                   
Sbjct: 1100 NVSYTWRSIQKGLRVLQNGMIWRVGDGSKINIWADPWIPRG----WSRKPMTPRGANLVT 1155

Query: 772  KVKHLIILGTSS*DLHRVGEMFPSPVSYAISLIPIRPNVKKDSLVWIKSKKGDFSVRSAH 593
            KV+ LI   T + D   + + F      AI  IP+   + +D L W    +G F+V+SA+
Sbjct: 1156 KVEELIDPYTGTWDEDLLSQTFWEEDVAAIKSIPVHVEM-EDVLAWHFDARGCFTVKSAY 1214

Query: 592  MA---LLREEDHGQC------SSQDLSLVKRIWKLKVDARTQLFTWKLLMNGLLTRENLL 440
                 + R      C       S D    K++WKL V  + + F W++  N L  R NL 
Sbjct: 1215 KVQREMERRASRNGCPGVSNWESGDDDFWKKLWKLGVPGKIKHFLWRMCHNTLALRANLH 1274

Query: 439  RR*FKGDVTCRFCLKEIETDFHLFFSCDWTKSLWFASPAAIKIDAMNITCCKEGIELFLK 260
             R    D  C  C +  E   HLFF C   K +W          A+N+   +  +E    
Sbjct: 1275 HRGMDVDTRCVMCGRYNEDAGHLFFKCKPVKKVW---------QALNLEELRSMLEQQTS 1325

Query: 259  W---IGTDYHEVHNRGLYGLIMLQEIWMHRNKVIFERVNSSMSAVW 131
                + + Y    N     ++ L + W  RN+    R      AVW
Sbjct: 1326 GKNVLQSIYCRPENERTSAIVCLWQWWKERNEEKSPRTGE--CAVW 1369