BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00022177
         (1082 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002265258.1| PREDICTED: pentatricopeptide repeat-containi...   477   e-132
ref|XP_003533536.1| PREDICTED: pentatricopeptide repeat-containi...   446   e-123
ref|XP_002324065.1| predicted protein [Populus trichocarpa] gi|2...   444   e-122
ref|XP_003543853.1| PREDICTED: pentatricopeptide repeat-containi...   441   e-121
ref|XP_003621254.1| Pentatricopeptide repeat protein [Medicago t...   411   e-112

>ref|XP_002265258.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39680-like
            [Vitis vinifera]
          Length = 703

 Score =  477 bits (1228), Expect = e-132
 Identities = 232/343 (67%), Positives = 277/343 (80%)
 Frame = -3

Query: 1071 LGVFKTVPGSDVLSYNSIINGFVENGYLSEALEVLYYMVDENVV*DYVTYVTALGLCAHL 892
            + V+  VPG DV SYN IING +ENGY SEALEVL  MVDE +V D VTYVTA GLC+HL
Sbjct: 184  MSVWYEVPGLDVFSYNIIINGLLENGYPSEALEVLDRMVDECIVWDNVTYVTAFGLCSHL 243

Query: 891  KDLKLGLQVHSRILRVEIEIDVFVGSVVIDMYGKCGKILGARNAFHGLHDRNVVLWTSVM 712
            KDL+LGLQVH R+ R   E D FV S +IDMYGKCG IL AR  F+ L  +NVV WT+++
Sbjct: 244  KDLRLGLQVHCRMFRTGAEYDSFVSSAIIDMYGKCGNILNARKVFNRLQTKNVVSWTAIL 303

Query: 711  AAYAQNDGFEEALNLYQEMMLEGV*PNEYTYAVLLNSCVGLSSLKHGDLLNAHALKSGFK 532
            AAY+QN  FEEALN + EM ++G+ PNEYT+AVLLNSC G+S+L HG LL+    KSGF+
Sbjct: 304  AAYSQNGCFEEALNFFPEMEVDGLLPNEYTFAVLLNSCAGISALGHGKLLHTRIKKSGFE 363

Query: 531  DYLIVENALINMYSKSGSIEHANQVFSNMIYRDRITWNSMISGYSHHGLGREALLVFYGM 352
            D++IV NALINMYSKSGSIE A++VF  MI RD ITW++MI G SHHGLGREAL+VF  M
Sbjct: 364  DHIIVGNALINMYSKSGSIEAAHKVFLEMICRDSITWSAMICGLSHHGLGREALVVFQEM 423

Query: 351  LAASEVPNYVTFIGVLSACAHLGLVDEGFYYLNQLMKEKGVEPGLEHYTCIIGLLGRAGR 172
            LAA E P+YVTF+GVLSACAHLG V EGFYYLNQLMK+ G+EPG+EHYTCI+GLL +AGR
Sbjct: 424  LAAKECPHYVTFVGVLSACAHLGSVQEGFYYLNQLMKQTGIEPGVEHYTCIVGLLCKAGR 483

Query: 171  FNEVENFMRSISINWDVVAWRTLLSACHIHRNLGLGKQVAEIM 43
             +E ENFM+S  + WDVVAWRTLLSACH+H+N GLGK+VAE++
Sbjct: 484  LDEAENFMKSTPVKWDVVAWRTLLSACHVHQNYGLGKKVAELV 526



 Score =  116 bits (291), Expect = 8e-24
 Identities = 81/279 (29%), Positives = 141/279 (50%), Gaps = 3/279 (1%)
 Frame = -3

Query: 921 VTALGLCAHLKDLKLGLQVHSRILRVE--IEIDVFVGSVVIDMYGKCGKILGARNAFHGL 748
           +  L + A  K+LK G  +H+ ++      + ++   + +I++Y KC +I+ AR  F G+
Sbjct: 29  IQLLKVSADTKNLKFGKMIHAHLIITNQATKDNIVQVNSLINLYAKCDQIMVARILFDGM 88

Query: 747 HDRNVVLWTSVMAAYAQNDGFEEALNLYQEMM-LEGV*PNEYTYAVLLNSCVGLSSLKHG 571
             RNVV W ++MA Y  N    E L L++ M+ ++ + PNEY +A +++SC     +  G
Sbjct: 89  RKRNVVSWGALMAGYFHNGLVLEVLRLFKTMISVDYMRPNEYIFATIISSCSDSGQVVEG 148

Query: 570 DLLNAHALKSGFKDYLIVENALINMYSKSGSIEHANQVFSNMIYRDRITWNSMISGYSHH 391
              + +ALKSG   +  V+NALI MYS+   ++ A  V+  +   D  ++N +I+G   +
Sbjct: 149 WQCHGYALKSGLVFHQYVKNALICMYSRRSDVKGAMSVWYEVPGLDVFSYNIIINGLLEN 208

Query: 390 GLGREALLVFYGMLAASEVPNYVTFIGVLSACAHLGLVDEGFYYLNQLMKEKGVEPGLEH 211
           G   EAL V   M+    V + VT++     C+HL  +  G   ++  M   G E     
Sbjct: 209 GYPSEALEVLDRMVDECIVWDNVTYVTAFGLCSHLKDLRLGL-QVHCRMFRTGAEYDSFV 267

Query: 210 YTCIIGLLGRAGRFNEVENFMRSISINWDVVAWRTLLSA 94
            + II + G+ G           +    +VV+W  +L+A
Sbjct: 268 SSAIIDMYGKCGNILNARKVFNRLQTK-NVVSWTAILAA 305



 Score =  108 bits (269), Expect = 3e-21
 Identities = 76/330 (23%), Positives = 157/330 (47%), Gaps = 2/330 (0%)
 Frame = -3

Query: 1041 DVLSYNSIINGFVENGYLSEALEVLYYMVDENVV*--DYVTYVTALGLCAHLKDLKLGLQ 868
            +V+S+ +++ G+  NG + E L +   M+  + +   +Y+ + T +  C+    +  G Q
Sbjct: 92   NVVSWGALMAGYFHNGLVLEVLRLFKTMISVDYMRPNEYI-FATIISSCSDSGQVVEGWQ 150

Query: 867  VHSRILRVEIEIDVFVGSVVIDMYGKCGKILGARNAFHGLHDRNVVLWTSVMAAYAQNDG 688
             H   L+  +    +V + +I MY +   + GA + ++ +   +V  +  ++    +N  
Sbjct: 151  CHGYALKSGLVFHQYVKNALICMYSRRSDVKGAMSVWYEVPGLDVFSYNIIINGLLENGY 210

Query: 687  FEEALNLYQEMMLEGV*PNEYTYAVLLNSCVGLSSLKHGDLLNAHALKSGFKDYLIVENA 508
              EAL +   M+ E +  +  TY      C  L  L+ G  ++    ++G +    V +A
Sbjct: 211  PSEALEVLDRMVDECIVWDNVTYVTAFGLCSHLKDLRLGLQVHCRMFRTGAEYDSFVSSA 270

Query: 507  LINMYSKSGSIEHANQVFSNMIYRDRITWNSMISGYSHHGLGREALLVFYGMLAASEVPN 328
            +I+MY K G+I +A +VF+ +  ++ ++W ++++ YS +G   EAL  F  M     +PN
Sbjct: 271  IIDMYGKCGNILNARKVFNRLQTKNVVSWTAILAAYSQNGCFEEALNFFPEMEVDGLLPN 330

Query: 327  YVTFIGVLSACAHLGLVDEGFYYLNQLMKEKGVEPGLEHYTCIIGLLGRAGRFNEVENFM 148
              TF  +L++CA +  +  G   L+  +K+ G E  +     +I +  ++G         
Sbjct: 331  EYTFAVLLNSCAGISALGHG-KLLHTRIKKSGFEDHIIVGNALINMYSKSGSIEAAHKVF 389

Query: 147  RSISINWDVVAWRTLLSACHIHRNLGLGKQ 58
              + I  D + W  ++     H   GLG++
Sbjct: 390  LEM-ICRDSITWSAMICGLSHH---GLGRE 415



 Score = 75.5 bits (184), Expect = 2e-11
 Identities = 71/230 (30%), Positives = 106/230 (46%), Gaps = 36/230 (15%)
 Frame = -3

Query: 636 PNEYTYAVLLNSCVGLSSLKHGDLLNAHAL--KSGFKDYLIVENALINMYSKSGSIEHAN 463
           P E+T   LL       +LK G +++AH +      KD ++  N+LIN+Y+K   I  A 
Sbjct: 24  PLEHTIQ-LLKVSADTKNLKFGKMIHAHLIITNQATKDNIVQVNSLINLYAKCDQIMVAR 82

Query: 462 QVFSNMIYRDRITWNSMISGYSHHGLGREALLVFYGMLAASEV-PNYVTFIGVLSACAHL 286
            +F  M  R+ ++W ++++GY H+GL  E L +F  M++   + PN   F  ++S+C+  
Sbjct: 83  ILFDGMRKRNVVSWGALMAGYFHNGLVLEVLRLFKTMISVDYMRPNEYIFATIISSCSDS 142

Query: 285 GLVDEGF---------------YYLNQLM-------KEKGV------EPGLE--HYTCII 196
           G V EG+               Y  N L+         KG        PGL+   Y  II
Sbjct: 143 GQVVEGWQCHGYALKSGLVFHQYVKNALICMYSRRSDVKGAMSVWYEVPGLDVFSYNIII 202

Query: 195 -GLL--GRAGRFNEVENFMRSISINWDVVAWRTLLSACHIHRNLGLGKQV 55
            GLL  G      EV + M    I WD V + T    C   ++L LG QV
Sbjct: 203 NGLLENGYPSEALEVLDRMVDECIVWDNVTYVTAFGLCSHLKDLRLGLQV 252


>ref|XP_003533536.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39680-like
            [Glycine max]
          Length = 694

 Score =  446 bits (1148), Expect = e-123
 Identities = 215/344 (62%), Positives = 273/344 (79%), Gaps = 3/344 (0%)
 Frame = -3

Query: 1071 LGVFKTVPG---SDVLSYNSIINGFVENGYLSEALEVLYYMVDENVV*DYVTYVTALGLC 901
            L V  TVPG   +D+ SYNS++N  VE+G   EA+EVL  MVDE V  D+VTYV  +GLC
Sbjct: 172  LQVLDTVPGEHVNDIFSYNSVLNALVESGRGEEAVEVLRRMVDECVAWDHVTYVGVMGLC 231

Query: 900  AHLKDLKLGLQVHSRILRVEIEIDVFVGSVVIDMYGKCGKILGARNAFHGLHDRNVVLWT 721
            A ++DL+LGL+VH+R+LR  +  D FVGS++IDMYGKCG++L ARN F GL +RNVV+WT
Sbjct: 232  AQIRDLQLGLRVHARLLRGGLMFDEFVGSMLIDMYGKCGEVLNARNVFDGLQNRNVVVWT 291

Query: 720  SVMAAYAQNDGFEEALNLYQEMMLEGV*PNEYTYAVLLNSCVGLSSLKHGDLLNAHALKS 541
            ++M AY QN  FEE+LNL+  M  EG  PNEYT+AVLLN+C G+++L+HGDLL+A   K 
Sbjct: 292  ALMTAYLQNGYFEESLNLFTCMDREGTLPNEYTFAVLLNACAGIAALRHGDLLHARVEKL 351

Query: 540  GFKDYLIVENALINMYSKSGSIEHANQVFSNMIYRDRITWNSMISGYSHHGLGREALLVF 361
            GFK+++IV NALINMYSKSGSI+ +  VF++MIYRD ITWN+MI GYSHHGLG++AL VF
Sbjct: 352  GFKNHVIVRNALINMYSKSGSIDSSYNVFTDMIYRDIITWNAMICGYSHHGLGKQALQVF 411

Query: 360  YGMLAASEVPNYVTFIGVLSACAHLGLVDEGFYYLNQLMKEKGVEPGLEHYTCIIGLLGR 181
              M++A E PNYVTFIGVLSA +HLGLV EGFYYLN LM+   +EPGLEHYTC++ LL R
Sbjct: 412  QDMVSAEECPNYVTFIGVLSAYSHLGLVKEGFYYLNHLMRNFKIEPGLEHYTCMVALLSR 471

Query: 180  AGRFNEVENFMRSISINWDVVAWRTLLSACHIHRNLGLGKQVAE 49
            AG  +E ENFM++  + WDVVAWRTLL+ACH+HRN  LG+++AE
Sbjct: 472  AGLLDEAENFMKTTQVKWDVVAWRTLLNACHVHRNYDLGRRIAE 515



 Score =  127 bits (320), Expect = 4e-27
 Identities = 87/344 (25%), Positives = 167/344 (48%), Gaps = 4/344 (1%)
 Frame = -3

Query: 1065 VFKTVPGSDVLSYNSIINGFVENGYLSEALEVLYYMVD-ENVV*DYVTYVTALGLCAHLK 889
            +F  +P  +V+S+N ++ G++  G   E L +   MV  +N   +   + TAL  C+H  
Sbjct: 72   LFDAMPLRNVVSWNVLMAGYLHGGNHLEVLVLFKNMVSLQNACPNEYVFTTALSACSHGG 131

Query: 888  DLKLGLQVHSRILRVEIEIDVFVGSVVIDMYGKCGKI---LGARNAFHGLHDRNVVLWTS 718
             +K G+Q H  + +  +    +V S ++ MY +C  +   L   +   G H  ++  + S
Sbjct: 132  RVKEGMQCHGLLFKFGLVCHQYVKSALVHMYSRCSHVELALQVLDTVPGEHVNDIFSYNS 191

Query: 717  VMAAYAQNDGFEEALNLYQEMMLEGV*PNEYTYAVLLNSCVGLSSLKHGDLLNAHALKSG 538
            V+ A  ++   EEA+ + + M+ E V  +  TY  ++  C  +  L+ G  ++A  L+ G
Sbjct: 192  VLNALVESGRGEEAVEVLRRMVDECVAWDHVTYVGVMGLCAQIRDLQLGLRVHARLLRGG 251

Query: 537  FKDYLIVENALINMYSKSGSIEHANQVFSNMIYRDRITWNSMISGYSHHGLGREALLVFY 358
                  V + LI+MY K G + +A  VF  +  R+ + W ++++ Y  +G   E+L +F 
Sbjct: 252  LMFDEFVGSMLIDMYGKCGEVLNARNVFDGLQNRNVVVWTALMTAYLQNGYFEESLNLFT 311

Query: 357  GMLAASEVPNYVTFIGVLSACAHLGLVDEGFYYLNQLMKEKGVEPGLEHYTCIIGLLGRA 178
             M     +PN  TF  +L+ACA +  +  G   L+  +++ G +  +     +I +  ++
Sbjct: 312  CMDREGTLPNEYTFAVLLNACAGIAALRHG-DLLHARVEKLGFKNHVIVRNALINMYSKS 370

Query: 177  GRFNEVENFMRSISINWDVVAWRTLLSACHIHRNLGLGKQVAEI 46
            G  +   N    + I  D++ W  ++     H   GLGKQ  ++
Sbjct: 371  GSIDSSYNVFTDM-IYRDIITWNAMICGYSHH---GLGKQALQV 410



 Score =  104 bits (260), Expect = 3e-20
 Identities = 78/280 (27%), Positives = 135/280 (48%), Gaps = 7/280 (2%)
 Frame = -3

Query: 912 LGLCAHLKDLKLGLQVHSRIL---RVEIEIDVFVGSVVIDMYGKCGKILGARNAFHGLHD 742
           L LCA +K L  G  +H++ L   +      +   + ++ +Y KCG++  ARN F  +  
Sbjct: 19  LKLCADVKWLPFGKAMHAQFLIRNQTSNHSHISHLNSLVHLYVKCGQLGLARNLFDAMPL 78

Query: 741 RNVVLWTSVMAAYAQNDGFEEALNLYQEMM-LEGV*PNEYTYAVLLNSCVGLSSLKHGDL 565
           RNVV W  +MA Y       E L L++ M+ L+   PNEY +   L++C     +K G  
Sbjct: 79  RNVVSWNVLMAGYLHGGNHLEVLVLFKNMVSLQNACPNEYVFTTALSACSHGGRVKEGMQ 138

Query: 564 LNAHALKSGFKDYLIVENALINMYSKSGSIEHANQVFSNM---IYRDRITWNSMISGYSH 394
            +    K G   +  V++AL++MYS+   +E A QV   +      D  ++NS+++    
Sbjct: 139 CHGLLFKFGLVCHQYVKSALVHMYSRCSHVELALQVLDTVPGEHVNDIFSYNSVLNALVE 198

Query: 393 HGLGREALLVFYGMLAASEVPNYVTFIGVLSACAHLGLVDEGFYYLNQLMKEKGVEPGLE 214
            G G EA+ V   M+      ++VT++GV+  CA +  +  G     +L++  G+     
Sbjct: 199 SGRGEEAVEVLRRMVDECVAWDHVTYVGVMGLCAQIRDLQLGLRVHARLLR-GGLMFDEF 257

Query: 213 HYTCIIGLLGRAGRFNEVENFMRSISINWDVVAWRTLLSA 94
             + +I + G+ G      N    +  N +VV W  L++A
Sbjct: 258 VGSMLIDMYGKCGEVLNARNVFDGLQ-NRNVVVWTALMTA 296



 Score = 71.2 bits (173), Expect = 4e-10
 Identities = 63/244 (25%), Positives = 104/244 (42%), Gaps = 41/244 (16%)
 Frame = -3

Query: 612 LLNSCVGLSSLKHGDLLNAHAL---KSGFKDYLIVENALINMYSKSGSIEHANQVFSNMI 442
           LL  C  +  L  G  ++A  L   ++    ++   N+L+++Y K G +  A  +F  M 
Sbjct: 18  LLKLCADVKWLPFGKAMHAQFLIRNQTSNHSHISHLNSLVHLYVKCGQLGLARNLFDAMP 77

Query: 441 YRDRITWNSMISGYSHHGLGREALLVFYGMLAASEV-PNYVTFIGVLSACAHLGLVDEGF 265
            R+ ++WN +++GY H G   E L++F  M++     PN   F   LSAC+H G V EG 
Sbjct: 78  LRNVVSWNVLMAGYLHGGNHLEVLVLFKNMVSLQNACPNEYVFTTALSACSHGGRVKEGM 137

Query: 264 YYLNQLMK-----EKGVEPGLEH----------------------------YTCIIGLLG 184
                L K      + V+  L H                            Y  ++  L 
Sbjct: 138 QCHGLLFKFGLVCHQYVKSALVHMYSRCSHVELALQVLDTVPGEHVNDIFSYNSVLNALV 197

Query: 183 RAGRFNEVENFMRSI---SINWDVVAWRTLLSACHIHRNLGLGKQV-AEIMN*GLVCFFF 16
            +GR  E    +R +    + WD V +  ++  C   R+L LG +V A ++  GL+   F
Sbjct: 198 ESGRGEEAVEVLRRMVDECVAWDHVTYVGVMGLCAQIRDLQLGLRVHARLLRGGLMFDEF 257

Query: 15  FGEV 4
            G +
Sbjct: 258 VGSM 261


>ref|XP_002324065.1| predicted protein [Populus trichocarpa] gi|222867067|gb|EEF04198.1|
            predicted protein [Populus trichocarpa]
          Length = 707

 Score =  444 bits (1141), Expect = e-122
 Identities = 214/343 (62%), Positives = 268/343 (78%)
 Frame = -3

Query: 1071 LGVFKTVPGSDVLSYNSIINGFVENGYLSEALEVLYYMVDENVV*DYVTYVTALGLCAHL 892
            +GV+  VP +D+++YNSI++  VENGYL E LEVL  MV E+V  D VT+V A  LCA L
Sbjct: 188  MGVWNEVPVNDIVAYNSILSSLVENGYLREGLEVLRSMVSESVKWDKVTFVNAFSLCASL 247

Query: 891  KDLKLGLQVHSRILRVEIEIDVFVGSVVIDMYGKCGKILGARNAFHGLHDRNVVLWTSVM 712
            KDL+LGL VH ++L  ++E D +V S +I+MYGKCGK L AR  F GL  RNVVLWT+VM
Sbjct: 248  KDLRLGLHVHGKMLTSDVECDAYVSSAIINMYGKCGKSLMARGVFDGLQSRNVVLWTAVM 307

Query: 711  AAYAQNDGFEEALNLYQEMMLEGV*PNEYTYAVLLNSCVGLSSLKHGDLLNAHALKSGFK 532
            A+  QN  FEEALNL+ +M  E V  NE+TYAVLLN+C GLS+ ++G LL+ H+ KSGFK
Sbjct: 308  ASCFQNGCFEEALNLFSKMEQENVKSNEFTYAVLLNACAGLSARRNGSLLHGHSEKSGFK 367

Query: 531  DYLIVENALINMYSKSGSIEHANQVFSNMIYRDRITWNSMISGYSHHGLGREALLVFYGM 352
             +++V NALINMY+KSG IE A +VFS+M++RD ITWN+MI G+SHHGLG++ALLVF  M
Sbjct: 368  HHVMVGNALINMYAKSGDIEAAKKVFSDMMHRDIITWNAMICGFSHHGLGKKALLVFQDM 427

Query: 351  LAASEVPNYVTFIGVLSACAHLGLVDEGFYYLNQLMKEKGVEPGLEHYTCIIGLLGRAGR 172
            LAA E PNYVTF GVLSAC HLGLV EGFYYL+ LMK+ GV+PGLEHYTCI+ LL + G+
Sbjct: 428  LAAEEHPNYVTFTGVLSACGHLGLVQEGFYYLHHLMKQFGVQPGLEHYTCIVSLLSKTGQ 487

Query: 171  FNEVENFMRSISINWDVVAWRTLLSACHIHRNLGLGKQVAEIM 43
             NE  NFMR+  + WDVVAWRTLL+ACH+H+N GLG+ VAE +
Sbjct: 488  LNEARNFMRTAPVKWDVVAWRTLLNACHVHQNYGLGRWVAEFV 530



 Score =  121 bits (303), Expect = 3e-25
 Identities = 81/280 (28%), Positives = 142/280 (50%), Gaps = 3/280 (1%)
 Frame = -3

Query: 921 VTALGLCAHLKDLKLGLQVHSRILRVE--IEIDVFVGSVVIDMYGKCGKILGARNAFHGL 748
           +  L L A  K+LK+G  +HS ++      E  +   + +I+ Y K  ++  A N F  +
Sbjct: 33  IKLLKLSADTKNLKVGKTIHSHLIVTSRATENSIIEVNSLINFYAKVNQVSIAHNLFDRM 92

Query: 747 HDRNVVLWTSVMAAYAQNDGFEEALNLYQEMMLEG-V*PNEYTYAVLLNSCVGLSSLKHG 571
            +RNVV W+++M  Y  N    + + L ++M+ EG V PNEY  A+ ++SC     ++ G
Sbjct: 93  PERNVVSWSALMTGYLLNGFSLKVIRLLKDMISEGNVSPNEYILAIAISSCCDRGRVEEG 152

Query: 570 DLLNAHALKSGFKDYLIVENALINMYSKSGSIEHANQVFSNMIYRDRITWNSMISGYSHH 391
              +   LK+GF  +  V NAL++MYSK   ++ A  V++ +   D + +NS++S    +
Sbjct: 153 RQCHGLLLKTGFSFHNYVRNALVSMYSKCSIVQDAMGVWNEVPVNDIVAYNSILSSLVEN 212

Query: 390 GLGREALLVFYGMLAASEVPNYVTFIGVLSACAHLGLVDEGFYYLNQLMKEKGVEPGLEH 211
           G  RE L V   M++ S   + VTF+   S CA L  +  G  +++  M    VE     
Sbjct: 213 GYLREGLEVLRSMVSESVKWDKVTFVNAFSLCASLKDLRLGL-HVHGKMLTSDVECDAYV 271

Query: 210 YTCIIGLLGRAGRFNEVENFMRSISINWDVVAWRTLLSAC 91
            + II + G+ G+          +  + +VV W  ++++C
Sbjct: 272 SSAIINMYGKCGKSLMARGVFDGLQ-SRNVVLWTAVMASC 310



 Score =  113 bits (283), Expect = 7e-23
 Identities = 80/341 (23%), Positives = 160/341 (46%), Gaps = 5/341 (1%)
 Frame = -3

Query: 1065 VFKTVPGSDVLSYNSIINGFVENGYLSEALEVLYYMVDE-NVV*DYVTYVTALGLCAHLK 889
            +F  +P  +V+S+++++ G++ NG+  + + +L  M+ E NV  +      A+  C    
Sbjct: 88   LFDRMPERNVVSWSALMTGYLLNGFSLKVIRLLKDMISEGNVSPNEYILAIAISSCCDRG 147

Query: 888  DLKLGLQVHSRILRVEIEIDVFVGSVVIDMYGKCGKILGARNAFHGLHDRNVVLWTSVMA 709
             ++ G Q H  +L+       +V + ++ MY KC  +  A   ++ +   ++V + S+++
Sbjct: 148  RVEEGRQCHGLLLKTGFSFHNYVRNALVSMYSKCSIVQDAMGVWNEVPVNDIVAYNSILS 207

Query: 708  AYAQNDGFEEALNLYQEMMLEGV*PNEYTYAVLLNSCVGLSSLKHGDLLNAHALKSGFKD 529
            +  +N    E L + + M+ E V  ++ T+    + C  L  L+ G  ++   L S  + 
Sbjct: 208  SLVENGYLREGLEVLRSMVSESVKWDKVTFVNAFSLCASLKDLRLGLHVHGKMLTSDVEC 267

Query: 528  YLIVENALINMYSKSGSIEHANQVFSNMIYRDRITWNSMISGYSHHGLGREALLVFYGML 349
               V +A+INMY K G    A  VF  +  R+ + W ++++    +G   EAL +F  M 
Sbjct: 268  DAYVSSAIINMYGKCGKSLMARGVFDGLQSRNVVLWTAVMASCFQNGCFEEALNLFSKME 327

Query: 348  AASEVPNYVTFIGVLSACAHLGLVDEGFYYLNQLMKEKGVEPGLEHY----TCIIGLLGR 181
              +   N  T+  +L+ACA L     G      L+     + G +H+      +I +  +
Sbjct: 328  QENVKSNEFTYAVLLNACAGLSARRNG-----SLLHGHSEKSGFKHHVMVGNALINMYAK 382

Query: 180  AGRFNEVENFMRSISINWDVVAWRTLLSACHIHRNLGLGKQ 58
            +G   E    + S  ++ D++ W  ++     H   GLGK+
Sbjct: 383  SGDI-EAAKKVFSDMMHRDIITWNAMICGFSHH---GLGKK 419



 Score = 58.2 bits (139), Expect = 4e-06
 Identities = 43/193 (22%), Positives = 91/193 (47%), Gaps = 3/193 (1%)
 Frame = -3

Query: 612 LLNSCVGLSSLKHGDLLNAHALKSG--FKDYLIVENALINMYSKSGSIEHANQVFSNMIY 439
           LL       +LK G  +++H + +    ++ +I  N+LIN Y+K   +  A+ +F  M  
Sbjct: 35  LLKLSADTKNLKVGKTIHSHLIVTSRATENSIIEVNSLINFYAKVNQVSIAHNLFDRMPE 94

Query: 438 RDRITWNSMISGYSHHGLGREALLVFYGMLAASEV-PNYVTFIGVLSACAHLGLVDEGFY 262
           R+ ++W+++++GY  +G   + + +   M++   V PN       +S+C   G V+EG  
Sbjct: 95  RNVVSWSALMTGYLLNGFSLKVIRLLKDMISEGNVSPNEYILAIAISSCCDRGRVEEG-R 153

Query: 261 YLNQLMKEKGVEPGLEHYTCIIGLLGRAGRFNEVENFMRSISINWDVVAWRTLLSACHIH 82
             + L+ + G          ++ +  +     +       + +N D+VA+ ++LS+   +
Sbjct: 154 QCHGLLLKTGFSFHNYVRNALVSMYSKCSIVQDAMGVWNEVPVN-DIVAYNSILSSLVEN 212

Query: 81  RNLGLGKQVAEIM 43
             L  G +V   M
Sbjct: 213 GYLREGLEVLRSM 225


>ref|XP_003543853.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39680-like
            [Glycine max]
          Length = 703

 Score =  441 bits (1134), Expect = e-121
 Identities = 212/340 (62%), Positives = 265/340 (77%), Gaps = 1/340 (0%)
 Frame = -3

Query: 1065 VFKTVPGSDVLSYNSIINGFVENGYLSEALEVLYYMVDENVV*DYVTYVTALGLCAHLKD 886
            +  TVPG DV SYNSI++  VE+G   EA +VL  MVDE V+ D VTYV+ LGLCA ++D
Sbjct: 185  ILDTVPGDDVFSYNSILSALVESGCRGEAAQVLKRMVDECVIWDSVTYVSVLGLCAQIRD 244

Query: 885  LKLGLQVHSRILRVEIEIDVFVGSVVIDMYGKCGKILGARNAFHGLHDRNVVLWTSVMAA 706
            L+LGLQ+H+++L+  +  DVFV S +ID YGKCG++L AR  F GL DRNVV WT+V+ A
Sbjct: 245  LQLGLQIHAQLLKTGLVFDVFVSSTLIDTYGKCGEVLNARKQFDGLRDRNVVAWTAVLTA 304

Query: 705  YAQNDGFEEALNLYQEMMLEGV*PNEYTYAVLLNSCVGLSSLKHGDLLNAHALKSGFKDY 526
            Y QN  FEE LNL+ +M LE   PNE+T+AVLLN+C  L +L +GDLL+   + SGFK++
Sbjct: 305  YLQNGHFEETLNLFTKMELEDTRPNEFTFAVLLNACASLVALAYGDLLHGRIVMSGFKNH 364

Query: 525  LIVENALINMYSKSGSIEHANQVFSNMIYRDRITWNSMISGYSHHGLGREALLVFYGMLA 346
            LIV NALINMYSKSG+I+ +  VFSNM+ RD ITWN+MI GYSHHGLG++ALLVF  M++
Sbjct: 365  LIVGNALINMYSKSGNIDSSYNVFSNMMNRDVITWNAMICGYSHHGLGKQALLVFQDMMS 424

Query: 345  ASEVPNYVTFIGVLSACAHLGLVDEGFYYLNQLMKEKGVEPGLEHYTCIIGLLGRAGRFN 166
            A E PNYVTFIGVLSAC HL LV EGFYY +Q+MK+  VEPGLEHYTC++ LLGRAG  +
Sbjct: 425  AGECPNYVTFIGVLSACVHLALVQEGFYYFDQIMKKFDVEPGLEHYTCMVALLGRAGLLD 484

Query: 165  EVENFMRSIS-INWDVVAWRTLLSACHIHRNLGLGKQVAE 49
            E ENFM++ + + WDVVAWRTLL+ACHIHRN  LGKQ+ E
Sbjct: 485  EAENFMKTTTQVKWDVVAWRTLLNACHIHRNYNLGKQITE 524



 Score =  114 bits (285), Expect = 4e-23
 Identities = 81/282 (28%), Positives = 138/282 (48%), Gaps = 6/282 (2%)
 Frame = -3

Query: 921 VTALGLCAHLKDLKLGLQVHSRIL---RVEIEIDVFVGSVVIDMYGKCGKILGARNAFHG 751
           V  L   A  K L+ G  +H++++   +   + D+   + +I++Y KCG+   AR  F  
Sbjct: 27  VNLLKFSATAKSLRFGKTIHAQLVVRNQTSKDSDITQINSLINLYSKCGQSKCARKLFDR 86

Query: 750 LHDRNVVLWTSVMAAYAQNDGFEEALNLYQEMM-LEGV*PNEYTYAVLLNSCVGLSSLKH 574
           +  RNVV W+++M  Y       E L L++ ++ L+   PNEY + ++L+ C     +K 
Sbjct: 87  MLQRNVVSWSALMMGYLHKGEVLEVLGLFRNLVSLDSAYPNEYIFTIVLSCCADSGRVKE 146

Query: 573 GDLLNAHALKSGFKDYLIVENALINMYSKSGSIEHANQVFSNMIYRDRITWNSMISGYSH 394
           G   + + LKSG   +  V+NALI+MYS+   ++ A Q+   +   D  ++NS++S    
Sbjct: 147 GKQCHGYLLKSGLLLHQYVKNALIHMYSRCFHVDSAMQILDTVPGDDVFSYNSILSALVE 206

Query: 393 HGLGREALLVFYGMLAASEVPNYVTFIGVLSACAHLGLVDEGFYYLNQLMKEKGVEPGLE 214
            G   EA  V   M+    + + VT++ VL  CA +  +  G     QL+K   V     
Sbjct: 207 SGCRGEAAQVLKRMVDECVIWDSVTYVSVLGLCAQIRDLQLGLQIHAQLLKTGLVFDVFV 266

Query: 213 HYTCIIGLLGRAGRFNEVENFMRSIS--INWDVVAWRTLLSA 94
             T    L+   G+  EV N  +      + +VVAW  +L+A
Sbjct: 267 SST----LIDTYGKCGEVLNARKQFDGLRDRNVVAWTAVLTA 304



 Score =  111 bits (277), Expect = 4e-22
 Identities = 83/334 (24%), Positives = 160/334 (47%), Gaps = 6/334 (1%)
 Frame = -3

Query: 1041 DVLSYNSIINGFVENGYLSEALEVLYYMV--DENVV*DYVTYVTALGLCAHLKDLKLGLQ 868
            +V+S+++++ G++  G + E L +   +V  D     +Y+ +   L  CA    +K G Q
Sbjct: 91   NVVSWSALMMGYLHKGEVLEVLGLFRNLVSLDSAYPNEYI-FTIVLSCCADSGRVKEGKQ 149

Query: 867  VHSRILRVEIEIDVFVGSVVIDMYGKCGKILGARNAFHGLHDRNVVLWTSVMAAYAQNDG 688
             H  +L+  + +  +V + +I MY +C  +  A      +   +V  + S+++A  ++  
Sbjct: 150  CHGYLLKSGLLLHQYVKNALIHMYSRCFHVDSAMQILDTVPGDDVFSYNSILSALVESGC 209

Query: 687  FEEALNLYQEMMLEGV*PNEYTYAVLLNSCVGLSSLKHGDLLNAHALKSGFKDYLIVENA 508
              EA  + + M+ E V  +  TY  +L  C  +  L+ G  ++A  LK+G    + V + 
Sbjct: 210  RGEAAQVLKRMVDECVIWDSVTYVSVLGLCAQIRDLQLGLQIHAQLLKTGLVFDVFVSST 269

Query: 507  LINMYSKSGSIEHANQVFSNMIYRDRITWNSMISGYSHHGLGREALLVFYGMLAASEVPN 328
            LI+ Y K G + +A + F  +  R+ + W ++++ Y  +G   E L +F  M      PN
Sbjct: 270  LIDTYGKCGEVLNARKQFDGLRDRNVVAWTAVLTAYLQNGHFEETLNLFTKMELEDTRPN 329

Query: 327  YVTFIGVLSACAHLGLVDEGFYYLNQLMKEKGVEPGLEHY----TCIIGLLGRAGRFNEV 160
              TF  +L+ACA L  +  G      L+  + V  G +++      +I +  ++G  +  
Sbjct: 330  EFTFAVLLNACASLVALAYG-----DLLHGRIVMSGFKNHLIVGNALINMYSKSGNIDSS 384

Query: 159  ENFMRSISINWDVVAWRTLLSACHIHRNLGLGKQ 58
             N   ++ +N DV+ W  ++     H   GLGKQ
Sbjct: 385  YNVFSNM-MNRDVITWNAMICGYSHH---GLGKQ 414


>ref|XP_003621254.1| Pentatricopeptide repeat protein [Medicago truncatula]
            gi|355496269|gb|AES77472.1| Pentatricopeptide repeat
            protein [Medicago truncatula]
          Length = 700

 Score =  411 bits (1057), Expect = e-112
 Identities = 200/332 (60%), Positives = 252/332 (75%)
 Frame = -3

Query: 1044 SDVLSYNSIINGFVENGYLSEALEVLYYMVDENVV*DYVTYVTALGLCAHLKDLKLGLQV 865
            +D   YNS++N  VE+G L EA+EVL  MVDE VV D VTYV+ +GLC  ++DL LGLQV
Sbjct: 190  NDAFCYNSVLNALVESGRLGEAVEVLGRMVDEGVVWDSVTYVSVMGLCGQIRDLGLGLQV 249

Query: 864  HSRILRVEIEIDVFVGSVVIDMYGKCGKILGARNAFHGLHDRNVVLWTSVMAAYAQNDGF 685
            H+++L+  +  DVFVGS+++DM+GKCG +L AR  F GL +RNVV+WTS+M AY QN  F
Sbjct: 250  HAQLLKGGLTFDVFVGSMLVDMFGKCGDVLSARKVFDGLQNRNVVVWTSLMTAYLQNGEF 309

Query: 684  EEALNLYQEMMLEGV*PNEYTYAVLLNSCVGLSSLKHGDLLNAHALKSGFKDYLIVENAL 505
            EE LNL   M  EG   NE+T+AVLLN+  G+++L+HGDLL+A   K G K+ +IV NAL
Sbjct: 310  EETLNLLSCMDREGTMSNEFTFAVLLNAFAGMAALRHGDLLHARVEKLGIKNRVIVGNAL 369

Query: 504  INMYSKSGSIEHANQVFSNMIYRDRITWNSMISGYSHHGLGREALLVFYGMLAASEVPNY 325
            INMYSK G I+ +  VF +M  RD ITWN+MI GYS HGLG++ALL+F  ML+A E PN+
Sbjct: 370  INMYSKCGCIDSSYDVFFDMRNRDIITWNAMICGYSQHGLGKQALLLFQDMLSAGECPNH 429

Query: 324  VTFIGVLSACAHLGLVDEGFYYLNQLMKEKGVEPGLEHYTCIIGLLGRAGRFNEVENFMR 145
            VTF+GVLSACAHL LV+EGFYYLNQLMK   VEPGLEHYTC++ +L RAG   E ENFMR
Sbjct: 430  VTFVGVLSACAHLALVNEGFYYLNQLMKHFKVEPGLEHYTCVVAVLCRAGMLEEAENFMR 489

Query: 144  SISINWDVVAWRTLLSACHIHRNLGLGKQVAE 49
            +  + WDVVAWR LL+AC+IHRN  LG ++AE
Sbjct: 490  TTQVKWDVVAWRVLLNACNIHRNYNLGTKIAE 521



 Score =  108 bits (270), Expect = 2e-21
 Identities = 81/332 (24%), Positives = 151/332 (45%), Gaps = 5/332 (1%)
 Frame = -3

Query: 1038 VLSYNSIINGFVENGYLSEALEVLYYMVDENVV*DYVTYVTALGLCAHLKDLKLGLQVHS 859
            V+SYN ++ G++ +G   E +++   MV      +   + T L  CAH   +  G+Q H 
Sbjct: 86   VVSYNVLMGGYLHSGEHLEVVKLFKNMVSSLYQPNEYVFTTVLSACAHSGRVFEGMQCHG 145

Query: 858  RILRVEIEIDVFVGSVVIDMYGKCGKILGARNAFHGLH-----DRNVVLWTSVMAAYAQN 694
             + +  +    FV S ++ MY KC  +  A       H     D +   + SV+ A  ++
Sbjct: 146  FLFKFGLVFHHFVKSSLVHMYSKCFHVDLALQVLESEHGNIDNDNDAFCYNSVLNALVES 205

Query: 693  DGFEEALNLYQEMMLEGV*PNEYTYAVLLNSCVGLSSLKHGDLLNAHALKSGFKDYLIVE 514
                EA+ +   M+ EGV  +  TY  ++  C  +  L  G  ++A  LK G    + V 
Sbjct: 206  GRLGEAVEVLGRMVDEGVVWDSVTYVSVMGLCGQIRDLGLGLQVHAQLLKGGLTFDVFVG 265

Query: 513  NALINMYSKSGSIEHANQVFSNMIYRDRITWNSMISGYSHHGLGREALLVFYGMLAASEV 334
            + L++M+ K G +  A +VF  +  R+ + W S+++ Y  +G   E L +   M     +
Sbjct: 266  SMLVDMFGKCGDVLSARKVFDGLQNRNVVVWTSLMTAYLQNGEFEETLNLLSCMDREGTM 325

Query: 333  PNYVTFIGVLSACAHLGLVDEGFYYLNQLMKEKGVEPGLEHYTCIIGLLGRAGRFNEVEN 154
             N  TF  +L+A A +  +  G   L+  +++ G++  +     +I +  + G  +   +
Sbjct: 326  SNEFTFAVLLNAFAGMAALRHG-DLLHARVEKLGIKNRVIVGNALINMYSKCGCIDSSYD 384

Query: 153  FMRSISINWDVVAWRTLLSACHIHRNLGLGKQ 58
                +  N D++ W  ++     H   GLGKQ
Sbjct: 385  VFFDMR-NRDIITWNAMICGYSQH---GLGKQ 412



 Score = 99.4 bits (246), Expect = 1e-18
 Identities = 58/231 (25%), Positives = 122/231 (52%), Gaps = 6/231 (2%)
 Frame = -3

Query: 1065 VFKTVPGSDVLSYNSIINGFVENGYLSEALEVLYYMVDENVV*DYVTYVTALGLCAHLKD 886
            VF  +   +V+ + S++  +++NG   E L +L  M  E  + +  T+   L   A +  
Sbjct: 284  VFDGLQNRNVVVWTSLMTAYLQNGEFEETLNLLSCMDREGTMSNEFTFAVLLNAFAGMAA 343

Query: 885  LKLGLQVHSRILRVEIEIDVFVGSVVIDMYGKCGKILGARNAFHGLHDRNVVLWTSVMAA 706
            L+ G  +H+R+ ++ I+  V VG+ +I+MY KCG I  + + F  + +R+++ W +++  
Sbjct: 344  LRHGDLLHARVEKLGIKNRVIVGNALINMYSKCGCIDSSYDVFFDMRNRDIITWNAMICG 403

Query: 705  YAQNDGFEEALNLYQEMMLEGV*PNEYTYAVLLNSCVGLSSLKHG-----DLLNAHALKS 541
            Y+Q+   ++AL L+Q+M+  G  PN  T+  +L++C  L+ +  G      L+    ++ 
Sbjct: 404  YSQHGLGKQALLLFQDMLSAGECPNHVTFVGVLSACAHLALVNEGFYYLNQLMKHFKVEP 463

Query: 540  GFKDYLIVENALINMYSKSGSIEHA-NQVFSNMIYRDRITWNSMISGYSHH 391
            G + Y  V    + +  ++G +E A N + +  +  D + W  +++  + H
Sbjct: 464  GLEHYTCV----VAVLCRAGMLEEAENFMRTTQVKWDVVAWRVLLNACNIH 510



 Score = 78.2 bits (191), Expect = 3e-12
 Identities = 66/233 (28%), Positives = 102/233 (43%), Gaps = 42/233 (18%)
 Frame = -3

Query: 576 HGDLL--NAHALKSGFKDYLIVE-NALINMYSKSGSIEHANQVFSNMIYRDRITWNSMIS 406
           H  LL  N  +    ++++ I++ N+LIN+Y K   +  A  +F  M  R  +++N ++ 
Sbjct: 35  HTQLLIRNQSSTHHSYREFNIIQLNSLINLYVKCSKLRLARYLFDEMSLRSVVSYNVLMG 94

Query: 405 GYSHHGLGREALLVFYGMLAASEVPNYVTFIGVLSACAHLGLVDE-----GFYYLNQLMK 241
           GY H G   E + +F  M+++   PN   F  VLSACAH G V E     GF +   L+ 
Sbjct: 95  GYLHSGEHLEVVKLFKNMVSSLYQPNEYVFTTVLSACAHSGRVFEGMQCHGFLFKFGLVF 154

Query: 240 EKGVEPGLEH------------------------------YTCIIGLL---GRAGRFNEV 160
              V+  L H                              Y  ++  L   GR G   EV
Sbjct: 155 HHFVKSSLVHMYSKCFHVDLALQVLESEHGNIDNDNDAFCYNSVLNALVESGRLGEAVEV 214

Query: 159 ENFMRSISINWDVVAWRTLLSACHIHRNLGLGKQV-AEIMN*GLVCFFFFGEV 4
              M    + WD V + +++  C   R+LGLG QV A+++  GL    F G +
Sbjct: 215 LGRMVDEGVVWDSVTYVSVMGLCGQIRDLGLGLQVHAQLLKGGLTFDVFVGSM 267