BLASTX nr result

ID: Coptis21_contig00021962 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00021962
         (547 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003625986.1| DEAD-box ATP-dependent RNA helicase [Medicag...    99   6e-19
ref|XP_004156816.1| PREDICTED: LOW QUALITY PROTEIN: DEAD-box ATP...    98   1e-18
ref|XP_004152219.1| PREDICTED: DEAD-box ATP-dependent RNA helica...    98   1e-18
ref|XP_003554554.1| PREDICTED: DEAD-box ATP-dependent RNA helica...    95   6e-18
ref|XP_003521597.1| PREDICTED: DEAD-box ATP-dependent RNA helica...    94   1e-17

>ref|XP_003625986.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
           gi|355501001|gb|AES82204.1| DEAD-box ATP-dependent RNA
           helicase [Medicago truncatula]
          Length = 775

 Score = 98.6 bits (244), Expect = 6e-19
 Identities = 47/62 (75%), Positives = 55/62 (88%), Gaps = 1/62 (1%)
 Frame = -2

Query: 183 VDPLDAFMEGIHEEMKAAPPVVKKIK-EDKYRDDIEDDPVESYLRAKKDIGLTLASDVLQ 7
           +DPLDAFMEGIHEEMK+APP   K K ED+Y+DD+EDDP+ES+LRAKKD+GLTLASD L 
Sbjct: 79  IDPLDAFMEGIHEEMKSAPPPKPKEKVEDRYKDDLEDDPMESFLRAKKDLGLTLASDALH 138

Query: 6   AG 1
           AG
Sbjct: 139 AG 140


>ref|XP_004156816.1| PREDICTED: LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase
           24-like [Cucumis sativus]
          Length = 774

 Score = 97.8 bits (242), Expect = 1e-18
 Identities = 46/61 (75%), Positives = 52/61 (85%)
 Frame = -2

Query: 183 VDPLDAFMEGIHEEMKAAPPVVKKIKEDKYRDDIEDDPVESYLRAKKDIGLTLASDVLQA 4
           +DPLDAFMEGIHEEMKA PP   K K DKYRDD E+DP+ES+LRAKKD+GLTLA+D L A
Sbjct: 83  IDPLDAFMEGIHEEMKAPPPPKPKEKVDKYRDDDEEDPMESFLRAKKDVGLTLAADALHA 142

Query: 3   G 1
           G
Sbjct: 143 G 143


>ref|XP_004152219.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 24-like [Cucumis
           sativus]
          Length = 777

 Score = 97.8 bits (242), Expect = 1e-18
 Identities = 46/61 (75%), Positives = 52/61 (85%)
 Frame = -2

Query: 183 VDPLDAFMEGIHEEMKAAPPVVKKIKEDKYRDDIEDDPVESYLRAKKDIGLTLASDVLQA 4
           +DPLDAFMEGIHEEMKA PP   K K DKYRDD E+DP+ES+LRAKKD+GLTLA+D L A
Sbjct: 80  IDPLDAFMEGIHEEMKAPPPPKPKEKVDKYRDDDEEDPMESFLRAKKDVGLTLAADALHA 139

Query: 3   G 1
           G
Sbjct: 140 G 140


>ref|XP_003554554.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 24-like [Glycine
           max]
          Length = 768

 Score = 95.1 bits (235), Expect = 6e-18
 Identities = 45/61 (73%), Positives = 54/61 (88%)
 Frame = -2

Query: 183 VDPLDAFMEGIHEEMKAAPPVVKKIKEDKYRDDIEDDPVESYLRAKKDIGLTLASDVLQA 4
           +DPLDAFMEGIHEEM+AAPP  +K  ED+YRDD +DDP+ES+L+AKKD+GLTLASD L A
Sbjct: 76  IDPLDAFMEGIHEEMRAAPPPKEKA-EDRYRDDEDDDPLESFLKAKKDLGLTLASDALHA 134

Query: 3   G 1
           G
Sbjct: 135 G 135


>ref|XP_003521597.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 24-like [Glycine
           max]
          Length = 782

 Score = 94.4 bits (233), Expect = 1e-17
 Identities = 46/62 (74%), Positives = 53/62 (85%), Gaps = 1/62 (1%)
 Frame = -2

Query: 183 VDPLDAFMEGIHEEMKAAPPVVKKIK-EDKYRDDIEDDPVESYLRAKKDIGLTLASDVLQ 7
           +DPLDAFMEGIHEEM+AAPP   K K ED+YRDD +DDP+ES+L AKKD+GLTLASD L 
Sbjct: 85  IDPLDAFMEGIHEEMRAAPPPKPKEKAEDRYRDDEDDDPMESFLMAKKDLGLTLASDALH 144

Query: 6   AG 1
           AG
Sbjct: 145 AG 146


Top