BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00021841
         (962 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002276824.2| PREDICTED: FACT complex subunit SPT16-like [...   333   3e-89
emb|CAN64799.1| hypothetical protein VITISV_017318 [Vitis vinifera]   333   3e-89
ref|XP_002330007.1| global transcription factor group [Populus t...   324   2e-86
gb|ACD46678.1| hypothetical protein [Aegilops tauschii]               320   3e-85
ref|XP_002512565.1| FACT complex subunit SPT16, putative [Ricinu...   319   7e-85

>ref|XP_002276824.2| PREDICTED: FACT complex subunit SPT16-like [Vitis vinifera]
          Length = 1071

 Score =  333 bits (855), Expect = 3e-89
 Identities = 166/242 (68%), Positives = 197/242 (81%), Gaps = 3/242 (1%)
 Frame = +1

Query: 244 PMADKRNGSRPEYDINLEIFMKRLKVFYSLWNANKTNYWASADTLVIATPPPSEDLRYLK 423
           P   K +G+   Y INL+ F KRLK  YS W  + ++ W S+D L IATPP S+DLRYLK
Sbjct: 11  PSDGKASGAASPYAINLDNFTKRLKTLYSHWKEHSSDLWGSSDALAIATPPASDDLRYLK 70

Query: 424 SSALNIWLLGLEFPDTIMVFMSKQIHFLCSQKKISLLEPLKKPVKEAVGAEIVMHVKAKS 603
           SSALNIWLLG EFP+TIMVFM KQIHFLCSQKK SLLE ++K  KEAVG E+VMHVKAKS
Sbjct: 71  SSALNIWLLGYEFPETIMVFMKKQIHFLCSQKKASLLEVVRKSAKEAVGVEVVMHVKAKS 130

Query: 604 DDGKRLMDEIFRAIRSQSKS---PVVGYIAKEAPEGNLLETWIEKLRSSGLKLEDVTSGF 774
           DDG  LMD IFRA+R+ S S   PVVG+I +EAPEG LLE W EKL+++  +L D+T+GF
Sbjct: 131 DDGTGLMDAIFRAVRANSSSHDTPVVGHIGREAPEGKLLEMWTEKLKNADFQLSDITNGF 190

Query: 775 SELFAVKDNMEITNVKKAAFLTSSVMKHHVVPKLEKIIDEERKVSHSTLMDETEKAIVEP 954
           S+LFA+KD+ E+TNVKKAAFLTSSVMKH VVPKLEK+IDEE+KVSHS+LMD+TEKAI+EP
Sbjct: 191 SDLFAMKDSTELTNVKKAAFLTSSVMKHFVVPKLEKVIDEEKKVSHSSLMDDTEKAILEP 250

Query: 955 AR 960
           AR
Sbjct: 251 AR 252


>emb|CAN64799.1| hypothetical protein VITISV_017318 [Vitis vinifera]
          Length = 1019

 Score =  333 bits (855), Expect = 3e-89
 Identities = 166/242 (68%), Positives = 197/242 (81%), Gaps = 3/242 (1%)
 Frame = +1

Query: 244 PMADKRNGSRPEYDINLEIFMKRLKVFYSLWNANKTNYWASADTLVIATPPPSEDLRYLK 423
           P   K +G+   Y INL+ F KRLK  YS W  + ++ W S+D L IATPP S+DLRYLK
Sbjct: 11  PSDGKASGAASPYAINLDNFTKRLKTLYSHWKEHSSDLWGSSDALAIATPPASDDLRYLK 70

Query: 424 SSALNIWLLGLEFPDTIMVFMSKQIHFLCSQKKISLLEPLKKPVKEAVGAEIVMHVKAKS 603
           SSALNIWLLG EFP+TIMVFM KQIHFLCSQKK SLLE ++K  KEAVG E+VMHVKAKS
Sbjct: 71  SSALNIWLLGYEFPETIMVFMKKQIHFLCSQKKASLLEVVRKSAKEAVGVEVVMHVKAKS 130

Query: 604 DDGKRLMDEIFRAIRSQSKS---PVVGYIAKEAPEGNLLETWIEKLRSSGLKLEDVTSGF 774
           DDG  LMD IFRA+R+ S S   PVVG+I +EAPEG LLE W EKL+++  +L D+T+GF
Sbjct: 131 DDGTGLMDAIFRAVRANSSSHDTPVVGHIGREAPEGKLLEMWTEKLKNADFQLSDITNGF 190

Query: 775 SELFAVKDNMEITNVKKAAFLTSSVMKHHVVPKLEKIIDEERKVSHSTLMDETEKAIVEP 954
           S+LFA+KD+ E+TNVKKAAFLTSSVMKH VVPKLEK+IDEE+KVSHS+LMD+TEKAI+EP
Sbjct: 191 SDLFAMKDSTELTNVKKAAFLTSSVMKHFVVPKLEKVIDEEKKVSHSSLMDDTEKAILEP 250

Query: 955 AR 960
           AR
Sbjct: 251 AR 252


>ref|XP_002330007.1| global transcription factor group [Populus trichocarpa]
           gi|222871432|gb|EEF08563.1| global transcription factor
           group [Populus trichocarpa]
          Length = 1065

 Score =  324 bits (830), Expect = 2e-86
 Identities = 165/250 (66%), Positives = 196/250 (78%), Gaps = 12/250 (4%)
 Frame = +1

Query: 247 MADKRNGS-------RPEYDINLEIFMKRLKVFYSLWNANKTNYWASADTLVIATPPPSE 405
           MAD+RNGS       R  Y I++E F  RLK FYS WN NK + W S+D + IATPPPSE
Sbjct: 1   MADQRNGSGQPSNAARNVYAIDVEKFKTRLKAFYSNWNENKADLWGSSDVVAIATPPPSE 60

Query: 406 DLRYLKSSALNIWLLGLEFPDTIMVFMSKQIHFLCSQKKISLLEPLKKPVKEAVGAEIVM 585
           DLRYLKSSALNIWLLG EFP+T+MVFM KQIHFLCSQKK SLLE +KKP +E VG ++VM
Sbjct: 61  DLRYLKSSALNIWLLGYEFPETVMVFMKKQIHFLCSQKKASLLEVVKKPAREVVGVDVVM 120

Query: 586 HVKAKSDDGKRLMDEIFRAIRSQS-----KSPVVGYIAKEAPEGNLLETWIEKLRSSGLK 750
           HVKAK+D+G  LM+ IFRAIRSQS      +PVVG+I +EAPEGNLLETW EKL+ +G +
Sbjct: 121 HVKAKTDNGTGLMEAIFRAIRSQSGADGQVAPVVGHIVREAPEGNLLETWSEKLKGAGFE 180

Query: 751 LEDVTSGFSELFAVKDNMEITNVKKAAFLTSSVMKHHVVPKLEKIIDEERKVSHSTLMDE 930
           L DVT+G S+LFAVKD  E+ NVKKAAFLT SVM + VVPKLE +IDEE+ ++HS LMDE
Sbjct: 181 LADVTNGLSDLFAVKDADELINVKKAAFLTFSVMNNIVVPKLENVIDEEKNITHSALMDE 240

Query: 931 TEKAIVEPAR 960
            EKAI++P R
Sbjct: 241 AEKAILDPTR 250


>gb|ACD46678.1| hypothetical protein [Aegilops tauschii]
          Length = 1085

 Score =  320 bits (820), Expect = 3e-85
 Identities = 159/236 (67%), Positives = 193/236 (81%), Gaps = 2/236 (0%)
 Frame = +1

Query: 259 RNGSRPEYDINLEIFMKRLKVFYSLWNANKTNYWASADTLVIATPPPSEDLRYLKSSALN 438
           ++GS   Y INLEIF KRLKVFY  WN NK++ WAS+D + IATPPPSEDLRYLKS+AL+
Sbjct: 8   KSGSGAAYTINLEIFSKRLKVFYDHWNGNKSDLWASSDAIAIATPPPSEDLRYLKSTALD 67

Query: 439 IWLLGLEFPDTIMVFMSKQIHFLCSQKKISLLEPLKKPVKEAVGAEIVMHVKAKSDDGKR 618
           +WLLG EFP+TI+VFM KQIHFLCSQKK +L+  LK    EAVG++I++HVK+K+ DG  
Sbjct: 68  VWLLGYEFPETIIVFMQKQIHFLCSQKKANLIGTLKDAASEAVGSDIILHVKSKNGDGID 127

Query: 619 LMDEIFRAIRSQSKS--PVVGYIAKEAPEGNLLETWIEKLRSSGLKLEDVTSGFSELFAV 792
           LMD+I RA+ +QSKS  PVVG+IAKEAPEG LLETW EKL    ++L DVT GFSELFAV
Sbjct: 128 LMDDILRAVSAQSKSDTPVVGHIAKEAPEGKLLETWAEKLAGGSVQLADVTHGFSELFAV 187

Query: 793 KDNMEITNVKKAAFLTSSVMKHHVVPKLEKIIDEERKVSHSTLMDETEKAIVEPAR 960
           KD  EI  VKKAA+LTSSVMK+ VVP +EK+IDEERKVSHS+LMD+TEK I++P +
Sbjct: 188 KDATEIICVKKAAYLTSSVMKNFVVPTMEKVIDEERKVSHSSLMDDTEKVILDPLK 243


>ref|XP_002512565.1| FACT complex subunit SPT16, putative [Ricinus communis]
           gi|223548526|gb|EEF50017.1| FACT complex subunit SPT16,
           putative [Ricinus communis]
          Length = 1098

 Score =  319 bits (817), Expect = 7e-85
 Identities = 155/243 (63%), Positives = 193/243 (79%), Gaps = 2/243 (0%)
 Frame = +1

Query: 238 VFPMADKRNGSRPEYDINLEIFMKRLKVFYSLWNANKTNYWASADTLVIATPPPSEDLRY 417
           V P   K +G    Y I+L+ F KRLK+ Y  W+ N    W ++D L +ATPPPSEDLRY
Sbjct: 8   VRPPNGKPSGGTNPYLIDLDNFTKRLKMLYLHWSENNIELWGASDALAVATPPPSEDLRY 67

Query: 418 LKSSALNIWLLGLEFPDTIMVFMSKQIHFLCSQKKISLLEPLKKPVKEAVGAEIVMHVKA 597
           LKS+ALNIWL+G EFP+TIMVFM KQ+HFLCSQKK SLL+ +KKP KE++G E+VMHVK 
Sbjct: 68  LKSTALNIWLVGYEFPETIMVFMKKQVHFLCSQKKASLLDVVKKPAKESIGVEVVMHVKT 127

Query: 598 KSDDGKRLMDEIFRAIRSQS--KSPVVGYIAKEAPEGNLLETWIEKLRSSGLKLEDVTSG 771
           KSDDG  LMD IF A+ + S  K+PV+G+IA+E+PEG LLE W +KL++   +L DVT+G
Sbjct: 128 KSDDGSSLMDNIFNAVHASSGDKTPVIGHIARESPEGKLLEIWDKKLKNGNCELSDVTNG 187

Query: 772 FSELFAVKDNMEITNVKKAAFLTSSVMKHHVVPKLEKIIDEERKVSHSTLMDETEKAIVE 951
           FS+LFAVKDN E+T V+KAAFLTSSVMK  VVPKLEK+IDEE+K++HS+ MDETEKAI+E
Sbjct: 188 FSDLFAVKDNTELTYVRKAAFLTSSVMKQFVVPKLEKVIDEEKKITHSSFMDETEKAILE 247

Query: 952 PAR 960
           PAR
Sbjct: 248 PAR 250