BLASTX nr result

ID: Coptis21_contig00021813 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00021813
         (240 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002975496.1| hypothetical protein SELMODRAFT_103932 [Sela...    48   5e-06
ref|XP_002880100.1| hypothetical protein ARALYDRAFT_483548 [Arab...    48   6e-06
ref|XP_002867710.1| hypothetical protein ARALYDRAFT_492537 [Arab...    45   6e-06
ref|XP_002978737.1| hypothetical protein SELMODRAFT_109359 [Sela...    48   8e-06

>ref|XP_002975496.1| hypothetical protein SELMODRAFT_103932 [Selaginella moellendorffii]
           gi|300156497|gb|EFJ23125.1| hypothetical protein
           SELMODRAFT_103932 [Selaginella moellendorffii]
          Length = 414

 Score = 48.1 bits (113), Expect(2) = 5e-06
 Identities = 22/47 (46%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -3

Query: 190 TGKWWLSLHHIHIGYWPKSLLPQLDGGASIIAWGG-LAGGPPNDSHT 53
           TG WWL      IGYWP  L   L G A++I WGG +    PN+ HT
Sbjct: 299 TGNWWLRYGDELIGYWPPQLFTHLAGFANVIEWGGEVVNTRPNNRHT 345



 Score = 26.9 bits (58), Expect(2) = 5e-06
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 57  TPMGNGHYPHDDYKRACYI 1
           T MG+GHYP   Y  A Y+
Sbjct: 347 TQMGSGHYPQSGYAVASYL 365


>ref|XP_002880100.1| hypothetical protein ARALYDRAFT_483548 [Arabidopsis lyrata subsp.
           lyrata] gi|297325939|gb|EFH56359.1| hypothetical protein
           ARALYDRAFT_483548 [Arabidopsis lyrata subsp. lyrata]
          Length = 410

 Score = 47.8 bits (112), Expect(2) = 6e-06
 Identities = 18/35 (51%), Positives = 22/35 (62%)
 Frame = -3

Query: 190 TGKWWLSLHHIHIGYWPKSLLPQLDGGASIIAWGG 86
           TG WWL      +GYWP  L+P+L   A +IAWGG
Sbjct: 287 TGLWWLKFDTYQVGYWPSFLVPKLADSARMIAWGG 321



 Score = 26.9 bits (58), Expect(2) = 6e-06
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -1

Query: 57  TPMGNGHYPHDDYKRACYI 1
           T MG+GH+  + +K+A YI
Sbjct: 336 TQMGSGHFAEEGFKKAAYI 354


>ref|XP_002867710.1| hypothetical protein ARALYDRAFT_492537 [Arabidopsis lyrata subsp.
           lyrata] gi|297313546|gb|EFH43969.1| hypothetical protein
           ARALYDRAFT_492537 [Arabidopsis lyrata subsp. lyrata]
          Length = 400

 Score = 45.1 bits (105), Expect(2) = 6e-06
 Identities = 22/37 (59%), Positives = 25/37 (67%), Gaps = 2/37 (5%)
 Frame = -3

Query: 190 TGKWWLSLHHIHIGYWPKSLL-PQ-LDGGASIIAWGG 86
           TG WW  L++  IGYWPKSL  PQ L  GAS + WGG
Sbjct: 278 TGDWWFVLNNEPIGYWPKSLFKPQGLADGASAVFWGG 314



 Score = 29.6 bits (65), Expect(2) = 6e-06
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = -1

Query: 51  MGNGHYPHDDYKRACYI 1
           MG+GH+P + YK+A Y+
Sbjct: 327 MGSGHFPQEGYKKAAYV 343


>ref|XP_002978737.1| hypothetical protein SELMODRAFT_109359 [Selaginella moellendorffii]
           gi|300153546|gb|EFJ20184.1| hypothetical protein
           SELMODRAFT_109359 [Selaginella moellendorffii]
          Length = 398

 Score = 48.1 bits (113), Expect(2) = 8e-06
 Identities = 22/47 (46%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -3

Query: 190 TGKWWLSLHHIHIGYWPKSLLPQLDGGASIIAWGG-LAGGPPNDSHT 53
           TG WWL      IGYWP  L   L G A++I WGG +    PN+ HT
Sbjct: 283 TGNWWLRYGDELIGYWPPQLFTHLAGFANVIEWGGEVVNTRPNNRHT 329



 Score = 26.2 bits (56), Expect(2) = 8e-06
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -1

Query: 57  TPMGNGHYPHDDYKRACYI 1
           T MG+GHYP   Y  A Y+
Sbjct: 331 TQMGSGHYPQAGYAVASYL 349


Top