BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00021777
         (419 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002276964.1| PREDICTED: peptide deformylase 1B, chloropla...   130   1e-28
ref|XP_004158319.1| PREDICTED: peptide deformylase 1B, chloropla...   124   1e-26
ref|XP_002521451.1| polypeptide deformylase, putative [Ricinus c...   117   1e-24
ref|NP_001234441.1| peptide deformylase 1B, chloroplastic [Solan...   115   4e-24
ref|XP_002300047.1| peptide deformylase [Populus trichocarpa] gi...   110   1e-22

>ref|XP_002276964.1| PREDICTED: peptide deformylase 1B, chloroplastic [Vitis vinifera]
           gi|296087647|emb|CBI34903.3| unnamed protein product
           [Vitis vinifera]
          Length = 275

 Score =  130 bits (327), Expect = 1e-28
 Identities = 74/135 (54%), Positives = 88/135 (65%), Gaps = 10/135 (7%)
 Frame = +2

Query: 44  MARAIFLQQSSLSNKLLPPFSHHASFPRRLSHRHLF----------SHTRLISLKTMALA 193
           MA A  L  S LSN  LP   H ++     SH H F          +  RL  ++    A
Sbjct: 1   MAFASCLHSSYLSNTFLPILRHRSALSTSTSHLHRFCSPSRFFSSANRFRLPLMQVQVQA 60

Query: 194 KRTFSSSKKDPLASPCDLVFKSPLKIVEYPDPILRAPNKRIGTFDENIEKLVREMFDIMY 373
           KR FS  K++ +ASP DL F++PLKIVEYPDPILRA NK I TFD+N++KLV EMFD+MY
Sbjct: 61  KRGFSF-KEEVIASPADLSFEAPLKIVEYPDPILRAKNKLISTFDDNLKKLVDEMFDVMY 119

Query: 374 KTDGIGLSAPQVGIN 418
           KTDGIGLSAPQVGIN
Sbjct: 120 KTDGIGLSAPQVGIN 134


>ref|XP_004158319.1| PREDICTED: peptide deformylase 1B, chloroplastic-like [Cucumis
           sativus]
          Length = 273

 Score =  124 bits (310), Expect = 1e-26
 Identities = 75/125 (60%), Positives = 90/125 (72%), Gaps = 10/125 (8%)
 Frame = +2

Query: 74  SLSNKLLPPFSHHASFP---RRLSHRH----LFSHT---RLISLKTMALAKRTFSSSKKD 223
           SL + LLP  S   S P   RRLS       LFSH+   +  S    A AKR FS+ K+D
Sbjct: 10  SLPHALLPTVSCWLSPPAVFRRLSGFSSTCKLFSHSSKFKAPSTLVYAQAKRGFSA-KED 68

Query: 224 PLASPCDLVFKSPLKIVEYPDPILRAPNKRIGTFDENIEKLVREMFDIMYKTDGIGLSAP 403
            +AS  DL F++PLKIVEYPDPILRA NKRIG+FD+N++KLV+EMFD+MYKTDGIGLSAP
Sbjct: 69  DVASSVDLEFEAPLKIVEYPDPILRAKNKRIGSFDDNLKKLVQEMFDVMYKTDGIGLSAP 128

Query: 404 QVGIN 418
           QVG+N
Sbjct: 129 QVGVN 133


>ref|XP_002521451.1| polypeptide deformylase, putative [Ricinus communis]
           gi|223539350|gb|EEF40941.1| polypeptide deformylase,
           putative [Ricinus communis]
          Length = 282

 Score =  117 bits (292), Expect = 1e-24
 Identities = 58/83 (69%), Positives = 69/83 (83%)
 Frame = +2

Query: 170 SLKTMALAKRTFSSSKKDPLASPCDLVFKSPLKIVEYPDPILRAPNKRIGTFDENIEKLV 349
           S+   A AKR+FS  K++ +A+P DL F+ PLKIVEYPDPILR  NKRI TFD+N++KLV
Sbjct: 60  SIPVRAQAKRSFSF-KEEEIATPADLCFEEPLKIVEYPDPILRRKNKRIDTFDDNLKKLV 118

Query: 350 REMFDIMYKTDGIGLSAPQVGIN 418
            EMFD+MYKTDGIGLSAPQVGIN
Sbjct: 119 DEMFDVMYKTDGIGLSAPQVGIN 141


>ref|NP_001234441.1| peptide deformylase 1B, chloroplastic [Solanum lycopersicum]
           gi|17433052|sp|Q9FV54.1|DEF1B_SOLLC RecName:
           Full=Peptide deformylase 1B, chloroplastic; Short=PDF
           1B; AltName: Full=Polypeptide deformylase; Flags:
           Precursor gi|11320950|gb|AAG33972.1| peptide
           deformylase-like protein [Solanum lycopersicum]
          Length = 279

 Score =  115 bits (288), Expect = 4e-24
 Identities = 72/137 (52%), Positives = 86/137 (62%), Gaps = 12/137 (8%)
 Frame = +2

Query: 44  MARAIFLQQSSLSNKLLPPFSHHASFPRRLS---HRHLFSHTRLIS--------LKTMAL 190
           MA A +   SS +  L P  S ++S P  +S   HR+  ++    S        L   A 
Sbjct: 3   MAAASWASSSSFTRFLRPLLSRNSS-PSPISYSLHRYKSANCLFFSASSNKPPKLAVYAQ 61

Query: 191 AKRTFSSSKK-DPLASPCDLVFKSPLKIVEYPDPILRAPNKRIGTFDENIEKLVREMFDI 367
           A+R  SS  K D +A+P DL F  PLKIVEYPDPILRA NKRI  FD N++KLV EMFDI
Sbjct: 62  ARRVLSSKTKGDEIATPADLSFVVPLKIVEYPDPILRAKNKRIDNFDANLKKLVDEMFDI 121

Query: 368 MYKTDGIGLSAPQVGIN 418
           MYKTDGIGLSAPQVG+N
Sbjct: 122 MYKTDGIGLSAPQVGMN 138


>ref|XP_002300047.1| peptide deformylase [Populus trichocarpa]
           gi|222847305|gb|EEE84852.1| peptide deformylase [Populus
           trichocarpa]
          Length = 258

 Score =  110 bits (275), Expect = 1e-22
 Identities = 69/122 (56%), Positives = 83/122 (68%), Gaps = 8/122 (6%)
 Frame = +2

Query: 77  LSNKLLPPFSHHASF----PRRLSHRHLFSHT----RLISLKTMALAKRTFSSSKKDPLA 232
           LS  LL P+ H  +     P RL+    FS T    R  SL   + AKR     K+D +A
Sbjct: 1   LSRALLLPYLHSRTQTLCEPIRLAR---FSSTMKQPRPPSLFVRSQAKRG-PFLKQDQVA 56

Query: 233 SPCDLVFKSPLKIVEYPDPILRAPNKRIGTFDENIEKLVREMFDIMYKTDGIGLSAPQVG 412
           +  DL F++PLKIVEYPDPILRA NKRI +FD+N++KLV EMFD+MYKTDGIGLSAPQVG
Sbjct: 57  ATSDLEFEAPLKIVEYPDPILRAKNKRIDSFDDNLKKLVDEMFDVMYKTDGIGLSAPQVG 116

Query: 413 IN 418
           IN
Sbjct: 117 IN 118