BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00021525
         (630 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002515739.1| pentatricopeptide repeat-containing protein,...   151   3e-37
ref|XP_002335015.1| predicted protein [Populus trichocarpa] gi|2...   142   6e-34
emb|CBI32762.3| unnamed protein product [Vitis vinifera]              141   6e-33
ref|XP_002276762.2| PREDICTED: pentatricopeptide repeat-containi...   141   6e-33
ref|XP_002534209.1| pentatricopeptide repeat-containing protein,...   120   7e-27

>ref|XP_002515739.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223545176|gb|EEF46686.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 613

 Score =  151 bits (381), Expect(2) = 3e-37
 Identities = 88/194 (45%), Positives = 123/194 (63%), Gaps = 7/194 (3%)
 Frame = +3

Query: 12  KISKPSNPSPHSNQNIADKISKTLIISPSKSLQNPTSPLFSNLNSEIIRTVISNPRLKIQ 191
           K S P+ P+   +Q IA+KI+K LI S  K L+  +S L SNL+S     V+SNP L  +
Sbjct: 11  KRSNPTIPTSILSQEIAEKITKILIKSGLKPLETKSS-LLSNLDSYTTNLVLSNPNLPTR 69

Query: 192 TCLDFFNFLNRTQ----HKHDIYTHVVLICRVFEARKFVLAKDLLKYIAVSD---CPISN 350
           +CL+FF  L + Q    HK D+  HV+LI R+F+ARKFV+ K++L   A+     C +S+
Sbjct: 70  SCLNFFKCLQKNQSLICHKPDLRAHVILISRLFKARKFVVMKNVLTCYAMDKNLRCSVSD 129

Query: 351 FASLVKKCSESEWVLSKLFDMLFRVYSDFKMFDKCSQVFQYMKSNGIEIEERSCFVCLLA 530
           F SL+         + KL DMLFRVY D  MF++  +VF YM  NG++I++RSC VCLLA
Sbjct: 130 FVSLIDNRFHEPKFVEKLCDMLFRVYVDNSMFEEGFKVFDYMVHNGLKIDDRSCIVCLLA 189

Query: 531 LKKSCQVELVLEFF 572
           LK+S Q+ + L FF
Sbjct: 190 LKRSDQMVMSLGFF 203



 Score = 30.0 bits (66), Expect(2) = 3e-37
 Identities = 12/21 (57%), Positives = 18/21 (85%)
 Frame = +1

Query: 568 FFEKMVEANVGLSVYSMSVVV 630
           FF+KMVE  V ++VYSM++V+
Sbjct: 202 FFKKMVEFKVDVTVYSMTIVI 222


>ref|XP_002335015.1| predicted protein [Populus trichocarpa] gi|222832609|gb|EEE71086.1|
           predicted protein [Populus trichocarpa]
          Length = 302

 Score =  142 bits (359), Expect(2) = 6e-34
 Identities = 80/192 (41%), Positives = 122/192 (63%), Gaps = 10/192 (5%)
 Frame = +3

Query: 27  SNPSPHSNQNIADKISKTLIISPSKSLQNPTSPLFSNLNSEIIRTVISNPRLKIQTCLDF 206
           ++P+  SN  +A KI+KTLI +  K  +   S L SNL+S I   V SNP + + +CL+F
Sbjct: 17  ASPTSLSNSELAQKIAKTLIKAGLKPFETTNSSLLSNLDSHITNLVFSNPNVPLHSCLNF 76

Query: 207 FNFLNRTQ----HKHDIYTHVVLICRVFEARKFVLAKDLLKYIAVSD---CPISNFASLV 365
           FNFL + Q    HK D+ +H+ ++ R+F+AR+F   K +L Y+A+     CP++N  SLV
Sbjct: 77  FNFLRKNQSFVSHKPDLQSHLSVVFRLFKARRFAEMKRVLTYVAMDSNLRCPVANLVSLV 136

Query: 366 KKC---SESEWVLSKLFDMLFRVYSDFKMFDKCSQVFQYMKSNGIEIEERSCFVCLLALK 536
           ++    +E  +V  KL DMLFRVY+D  +F++  +VF YM S  ++I++RSC V LLALK
Sbjct: 137 EESGFNNEPNFV-EKLCDMLFRVYADCNLFEEGFRVFDYMVSYELKIDDRSCIVFLLALK 195

Query: 537 KSCQVELVLEFF 572
           +  ++E  L  F
Sbjct: 196 RCDKMEACLGLF 207



 Score = 27.3 bits (59), Expect(2) = 6e-34
 Identities = 10/20 (50%), Positives = 18/20 (90%)
 Frame = +1

Query: 571 FEKMVEANVGLSVYSMSVVV 630
           F++MVE NV ++VYS+++V+
Sbjct: 207 FKRMVEFNVEVTVYSLTIVI 226


>emb|CBI32762.3| unnamed protein product [Vitis vinifera]
          Length = 648

 Score =  141 bits (356), Expect(2) = 6e-33
 Identities = 85/207 (41%), Positives = 124/207 (59%), Gaps = 18/207 (8%)
 Frame = +3

Query: 6   NLKISKPSNPSPHSNQNIADKISKTLIISPSKSLQNPTSPLFSNLNSEIIRTVISNPRLK 185
           NLK +  SNPS   NQ IA KISKTL+ S +KSLQ  T  L S+LNS+ +  ++SN  L 
Sbjct: 13  NLKKAFSSNPSLKLNQEIAGKISKTLVSSGAKSLQT-TPSLLSSLNSQTVHLILSNHILT 71

Query: 186 IQTCLDFFNFLNRTQHKHDIYTHVVLICRVFEARK---------FVLAKDLLKYIAVSD- 335
            ++CLDFF+F+ +  +K D+  ++ LI +++ +RK         F   + L    AV D 
Sbjct: 72  AESCLDFFHFIRKNYYKPDLRAYITLIFKLYRSRKSDKLHKSQKFAEIRHLFNCAAVDDG 131

Query: 336 --CPISNFASLV------KKCSESEWVLSKLFDMLFRVYSDFKMFDKCSQVFQYMKSNGI 491
              P++  ASLV       KC+ +++   K FD+LFRVY+D KMF +  + F++M+  G 
Sbjct: 132 LRVPVTVIASLVDDACNESKCNRAKFK-EKFFDLLFRVYADNKMFGEALEAFEHMEKKGF 190

Query: 492 EIEERSCFVCLLALKKSCQVELVLEFF 572
            I+ERSC V LLAL++  QV+  L FF
Sbjct: 191 HIDERSCLVYLLALRRGGQVDSCLRFF 217



 Score = 25.0 bits (53), Expect(2) = 6e-33
 Identities = 9/21 (42%), Positives = 17/21 (80%)
 Frame = +1

Query: 568 FFEKMVEANVGLSVYSMSVVV 630
           FF +MV  +V ++VYS+++V+
Sbjct: 216 FFRRMVNLDVEVTVYSLTIVL 236


>ref|XP_002276762.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g32630-like [Vitis vinifera]
          Length = 625

 Score =  141 bits (356), Expect(2) = 6e-33
 Identities = 85/207 (41%), Positives = 124/207 (59%), Gaps = 18/207 (8%)
 Frame = +3

Query: 6   NLKISKPSNPSPHSNQNIADKISKTLIISPSKSLQNPTSPLFSNLNSEIIRTVISNPRLK 185
           NLK +  SNPS   NQ IA KISKTL+ S +KSLQ  T  L S+LNS+ +  ++SN  L 
Sbjct: 9   NLKKAFSSNPSLKLNQEIAGKISKTLVSSGAKSLQT-TPSLLSSLNSQTVHLILSNHILT 67

Query: 186 IQTCLDFFNFLNRTQHKHDIYTHVVLICRVFEARK---------FVLAKDLLKYIAVSD- 335
            ++CLDFF+F+ +  +K D+  ++ LI +++ +RK         F   + L    AV D 
Sbjct: 68  AESCLDFFHFIRKNYYKPDLRAYITLIFKLYRSRKSDKLHKSQKFAEIRHLFNCAAVDDG 127

Query: 336 --CPISNFASLV------KKCSESEWVLSKLFDMLFRVYSDFKMFDKCSQVFQYMKSNGI 491
              P++  ASLV       KC+ +++   K FD+LFRVY+D KMF +  + F++M+  G 
Sbjct: 128 LRVPVTVIASLVDDACNESKCNRAKFK-EKFFDLLFRVYADNKMFGEALEAFEHMEKKGF 186

Query: 492 EIEERSCFVCLLALKKSCQVELVLEFF 572
            I+ERSC V LLAL++  QV+  L FF
Sbjct: 187 HIDERSCLVYLLALRRGGQVDSCLRFF 213



 Score = 25.0 bits (53), Expect(2) = 6e-33
 Identities = 9/21 (42%), Positives = 17/21 (80%)
 Frame = +1

Query: 568 FFEKMVEANVGLSVYSMSVVV 630
           FF +MV  +V ++VYS+++V+
Sbjct: 212 FFRRMVNLDVEVTVYSLTIVL 232


>ref|XP_002534209.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223525704|gb|EEF28173.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 491

 Score =  120 bits (300), Expect(2) = 7e-27
 Identities = 77/198 (38%), Positives = 116/198 (58%), Gaps = 8/198 (4%)
 Frame = +3

Query: 3   KNLKISKPSNPSPHSNQNIADKISKTLIISPSKSLQNPTSPLFSNLNSEIIRTVISNPRL 182
           K   +SKP    P+S       ISKTLI        +P+S + S+LN   ++ ++SNP  
Sbjct: 14  KRTHLSKPYQGIPYS-------ISKTLI--------SPSSTVLSDLNPTKLQQILSNPLH 58

Query: 183 KIQTCLDFFNFLNRTQH----KHDIYTHVVLICRVFEARKFVLAKDLLKYIAVSDC---P 341
               CL FFNF+ + Q     + D+  ++ LI R+ EARKF  A++LLK +++ D    P
Sbjct: 59  NPLKCLCFFNFIVKNQSLISFEPDLQAYLTLISRLLEARKFSDAENLLKSVSIEDYHRYP 118

Query: 342 ISNFASLVKKCSESE-WVLSKLFDMLFRVYSDFKMFDKCSQVFQYMKSNGIEIEERSCFV 518
               AS ++ C   E  V++KLF+++ +VYSD K F +  + F +MK+NGIEI+ER+C +
Sbjct: 119 FPLLASTIEHCCCLEPKVIAKLFNLMLKVYSDNKKFGQVIETFDHMKNNGIEIDERTCTM 178

Query: 519 CLLALKKSCQVELVLEFF 572
            LLALK+  Q+   LEFF
Sbjct: 179 HLLALKRKNQIRSSLEFF 196



 Score = 26.2 bits (56), Expect(2) = 7e-27
 Identities = 10/21 (47%), Positives = 17/21 (80%)
 Frame = +1

Query: 568 FFEKMVEANVGLSVYSMSVVV 630
           FF  M+++ V +SVYS+++VV
Sbjct: 195 FFNLMIKSGVEVSVYSLTIVV 215