BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00021524
         (421 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002515739.1| pentatricopeptide repeat-containing protein,...    61   2e-11
ref|XP_003556914.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...    57   2e-10
gb|ACB41641.1| At2g28050-like protein, partial [Arabidopsis aren...    54   2e-07
ref|XP_003590202.1| Pentatricopeptide repeat protein [Medicago t...    52   3e-07
ref|XP_002879120.1| pentatricopeptide repeat-containing protein ...    53   3e-07

>ref|XP_002515739.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223545176|gb|EEF46686.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 613

 Score = 60.8 bits (146), Expect(2) = 2e-11
 Identities = 25/49 (51%), Positives = 41/49 (83%)
 Frame = -1

Query: 154 LTVVVDLVCKRGDIKRGLELIQEMSGRGIKANVVTYNSVLDACIKVRDF 8
           +T+V+D +CK+G ++R  +L+ EM+G+GIK NVVTYN++++A IK+ DF
Sbjct: 218 MTIVIDGLCKKGRVERAKDLMLEMTGKGIKPNVVTYNTLVNAYIKIMDF 266



 Score = 32.3 bits (72), Expect(2) = 2e-11
 Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 16/77 (20%)
 Frame = -2

Query: 342 HLASLVRKCCE---NEWVLSKMFEKCFEVFVFCL-----------FTCLI--KKSSEVEL 211
           H    V K C+     +V + MFE+ F+VF + +             CL+  K+S ++ +
Sbjct: 139 HEPKFVEKLCDMLFRVYVDNSMFEEGFKVFDYMVHNGLKIDDRSCIVCLLALKRSDQMVM 198

Query: 210 ALEFFNKMVESNVGSSI 160
           +L FF KMVE  V  ++
Sbjct: 199 SLGFFKKMVEFKVDVTV 215


>ref|XP_003556914.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g32630-like [Glycine max]
          Length = 619

 Score = 56.6 bits (135), Expect(2) = 2e-10
 Identities = 23/48 (47%), Positives = 37/48 (77%)
 Frame = -1

Query: 154 LTVVVDLVCKRGDIKRGLELIQEMSGRGIKANVVTYNSVLDACIKVRD 11
           LT+VVD++C+RG++ R  EL+ EM+ RG+   V TYN++L+AC+  +D
Sbjct: 185 LTIVVDVLCRRGEVGRAKELMNEMAARGVVPTVFTYNTLLNACVVRKD 232



 Score = 33.5 bits (75), Expect(2) = 2e-10
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 8/59 (13%)
 Frame = -2

Query: 330 LVRKCCENEWVLSKMFEKCFEVFVFCLF--------TCLIKKSSEVELALEFFNKMVES 178
           L R C +N     +MF    +VF + +         +C  KK ++VEL + FF +MVES
Sbjct: 122 LFRVCADN-----RMFRDALKVFDYVMEKGLVVEGRSCFXKKCNKVELCVRFFRRMVES 175


>gb|ACB41641.1| At2g28050-like protein, partial [Arabidopsis arenosa]
          Length = 148

 Score = 53.5 bits (127), Expect(2) = 2e-07
 Identities = 26/50 (52%), Positives = 36/50 (72%), Gaps = 1/50 (2%)
 Frame = -1

Query: 154 LTVVVDLVCKRGDIKRGLELIQEMS-GRGIKANVVTYNSVLDACIKVRDF 8
           LTVVV  +C  G+I RG EL++EM   +GIK N+VT+ S++D C+K  DF
Sbjct: 99  LTVVVSALCCNGEITRGRELVEEMVLVKGIKPNIVTFKSMIDCCVKRWDF 148



 Score = 26.2 bits (56), Expect(2) = 2e-07
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -2

Query: 237 IKKSSEVELALEFFNKMVESNV 172
           +KK  ++ELA +FF  MVES +
Sbjct: 70  LKKCDQMELARDFFRLMVESGL 91


>ref|XP_003590202.1| Pentatricopeptide repeat protein [Medicago truncatula]
           gi|355479250|gb|AES60453.1| Pentatricopeptide repeat
           protein [Medicago truncatula]
          Length = 772

 Score = 52.0 bits (123), Expect(2) = 3e-07
 Identities = 23/49 (46%), Positives = 39/49 (79%), Gaps = 1/49 (2%)
 Frame = -1

Query: 154 LTVVVDLVCKRGDIKRGLELIQEMSGRGI-KANVVTYNSVLDACIKVRD 11
           LT+V+D++C+RG++++  EL+ EM G+GI K NV TYN++L+A +  +D
Sbjct: 219 LTLVIDVLCRRGEVEKAKELMDEMVGKGIVKPNVFTYNTLLNAYVGRKD 267



 Score = 27.3 bits (59), Expect(2) = 3e-07
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -2

Query: 237 IKKSSEVELALEFFNKMVESN 175
           +K+  EV+  + FF++MVESN
Sbjct: 190 LKRCGEVDFCVRFFHRMVESN 210


>ref|XP_002879120.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297324959|gb|EFH55379.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 483

 Score = 53.1 bits (126), Expect(2) = 3e-07
 Identities = 26/50 (52%), Positives = 36/50 (72%), Gaps = 1/50 (2%)
 Frame = -1

Query: 154 LTVVVDLVCKRGDIKRGLELIQEMS-GRGIKANVVTYNSVLDACIKVRDF 8
           LTVVV  +C  G+I RG EL++EM   +GIK N+VT+ S++D C+K  DF
Sbjct: 213 LTVVVTALCCNGEITRGRELVEEMVLVKGIKPNIVTFKSMIDCCVKRWDF 262



 Score = 26.2 bits (56), Expect(2) = 3e-07
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -2

Query: 237 IKKSSEVELALEFFNKMVESNV 172
           +KK  ++ELA +FF  MVES +
Sbjct: 184 LKKCDQMELARDFFRLMVESGL 205