BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00021497
         (721 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002273255.1| PREDICTED: pentatricopeptide repeat-containi...   265   5e-69
ref|XP_002326162.1| predicted protein [Populus trichocarpa] gi|2...   225   6e-57
ref|XP_003554352.1| PREDICTED: pentatricopeptide repeat-containi...   224   1e-56
ref|XP_002525196.1| pentatricopeptide repeat-containing protein,...   220   2e-55
ref|NP_195903.2| pentatricopeptide repeat-containing protein [Ar...   220   3e-55

>ref|XP_002273255.1| PREDICTED: pentatricopeptide repeat-containing protein At5g02830,
            chloroplastic [Vitis vinifera]
            gi|297741486|emb|CBI32618.3| unnamed protein product
            [Vitis vinifera]
          Length = 842

 Score =  265 bits (678), Expect = 5e-69
 Identities = 141/244 (57%), Positives = 184/244 (75%), Gaps = 7/244 (2%)
 Frame = +1

Query: 1    YGVKPNLVTYNTLLRARSRYGSLHEVKQCLAIYQHMRKAGYSPYDYFLKELVEEWCEGVI 180
            Y ++PNLVTYNTLLRARSRYGSLHEV+QCLAIYQHMRKAGY   DY+LKEL+EEWCEGVI
Sbjct: 598  YQIQPNLVTYNTLLRARSRYGSLHEVQQCLAIYQHMRKAGYKSNDYYLKELIEEWCEGVI 657

Query: 181  TYNNQDEGVVGLSDSLDKTDREKSQSLLLEKVAAHLQRDIARSVAVDLRGLTKVEARIVV 360
              NN ++       S+++ D  + QSLLLEKVAAHLQ+ +A S+A+DL+GLT+VEARIVV
Sbjct: 658  QDNNLNQSKF---SSVNRADWGRPQSLLLEKVAAHLQKSVAESLAIDLQGLTQVEARIVV 714

Query: 361  LAVLRMIKEKYRIGDPIEDDVDIILEVREESAGATNY-SEVQDAVVKLLRDELGLCIILT 537
            LAVLRMIKE Y +G PI+DD+ IIL +++  A    + S V+ A++KLL+DELGL +   
Sbjct: 715  LAVLRMIKENYILGHPIKDDILIILGIKKVDANLVEHESPVKGAIIKLLQDELGLEVAFA 774

Query: 538  GPRVS-PIRNDVGNPPATDLIHEKVAMK-----VLESSARRPAILRRVKVTRESMYQWLQ 699
            GP+++   R ++G PP +D   ++   +      LESS RRPA+L+R KVTR+S+  WLQ
Sbjct: 775  GPKIALDKRINLGGPPGSDPDWQEALGRNRLPTELESSTRRPAVLQRFKVTRKSLDHWLQ 834

Query: 700  KRVG 711
            +RVG
Sbjct: 835  RRVG 838


>ref|XP_002326162.1| predicted protein [Populus trichocarpa] gi|222833355|gb|EEE71832.1|
            predicted protein [Populus trichocarpa]
          Length = 828

 Score =  225 bits (574), Expect = 6e-57
 Identities = 121/236 (51%), Positives = 165/236 (69%), Gaps = 1/236 (0%)
 Frame = +1

Query: 7    VKPNLVTYNTLLRARSRYGSLHEVKQCLAIYQHMRKAGYSPYDYFLKELVEEWCEGVITY 186
            + PNLVTYNTLLRAR+RYGSL EV+QCLAIYQ MRKAGY   DY+LK+L+EEWCEGVI  
Sbjct: 611  INPNLVTYNTLLRARTRYGSLREVQQCLAIYQDMRKAGYKSNDYYLKQLIEEWCEGVIQD 670

Query: 187  NNQDEGVVGLSDSLDKTDREKSQSLLLEKVAAHLQRDIARSVAVDLRGLTKVEARIVVLA 366
            NNQ +G      S  +TD  + +SLLLEKVAAHLQ +I+ ++A+DL+GLTKVEARIVVLA
Sbjct: 671  NNQIQGGFA---SCKRTDLGRPRSLLLEKVAAHLQNNISENLAIDLQGLTKVEARIVVLA 727

Query: 367  VLRMIKEKYRIGDPIEDDVDIILEVREESAGATNYSEVQDAVVKLLRDELGLCIILTGP- 543
            VLRMIKE Y +G  +++D+ I L+V +    +   SEV++A+++LLR+ELGL +++  P 
Sbjct: 728  VLRMIKENYTLGYSVKEDMWITLDVSKVDPASKRDSEVKNAIIELLRNELGLEVLVAVPG 787

Query: 544  RVSPIRNDVGNPPATDLIHEKVAMKVLESSARRPAILRRVKVTRESMYQWLQKRVG 711
             +  I+ D                     S+  P + +R+KV R+S+++WLQ+R G
Sbjct: 788  HLDDIKTD-------------------SKSSLDPVVTQRLKVRRKSLHEWLQRRAG 824


>ref|XP_003554352.1| PREDICTED: pentatricopeptide repeat-containing protein At5g02830,
            chloroplastic-like [Glycine max]
          Length = 811

 Score =  224 bits (572), Expect = 1e-56
 Identities = 121/240 (50%), Positives = 170/240 (70%), Gaps = 5/240 (2%)
 Frame = +1

Query: 1    YGVKPNLVTYNTLLRARSRYGSLHEVKQCLAIYQHMRKAGYSPYDYFLKELVEEWCEGVI 180
            Y ++PN VTYNTLL+ARS+YG LHEV+QCLAIYQ MRKAGY P DY+L+EL+EEWCEGVI
Sbjct: 577  YQIRPNWVTYNTLLKARSKYGFLHEVQQCLAIYQDMRKAGYKPNDYYLEELIEEWCEGVI 636

Query: 181  TYNNQDEGVVGLSDSLDKTDREKSQSLLLEKVAAHLQRDIARSVAVDLRGLTKVEARIVV 360
              N + +G      S +K++ E+ QSLLLEK+AAHL + +A  +A+D++GLTKVEAR+VV
Sbjct: 637  QNNREKQGEF---SSSNKSESERPQSLLLEKIAAHLLKRVADILAIDVQGLTKVEARLVV 693

Query: 361  LAVLRMIKEKYRIGDPIEDDVDIIL-EVREESAGATNYSEVQDAVVKLLRDELGLCIILT 537
            LAVLRMIKE Y +G  + DD+ II+   + +   + +  EVQ+A++KLLR+ELGL +   
Sbjct: 694  LAVLRMIKENYGLGHSVNDDILIIIGATKVDENPSKHILEVQEAIIKLLRNELGLEVFPA 753

Query: 538  GPRVSPIRNDVGN---PPATDL-IHEKVAMKVLESSARRPAILRRVKVTRESMYQWLQKR 705
              R++   +D  N   P  ++L I  +     L    RRP +L R+KVT++S+Y+WL ++
Sbjct: 754  KTRLA--LSDTANLEYPNFSNLSIEAQPGENALGFQTRRPGVLVRLKVTKKSLYRWLHRK 811


>ref|XP_002525196.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223535493|gb|EEF37162.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 786

 Score =  220 bits (561), Expect = 2e-55
 Identities = 124/241 (51%), Positives = 169/241 (70%), Gaps = 4/241 (1%)
 Frame = +1

Query: 1    YGVKPNLVTYNTLLRARSRYGSLHEVKQCLAIYQHMRKAGYSPYDYFLKELVEEWCEGVI 180
            Y +KPNLVTY+TLLRAR+RYGSL EV+QCLAIYQ MRKAGY   D +LK+L+EEWCEGVI
Sbjct: 545  YQLKPNLVTYDTLLRARTRYGSLKEVQQCLAIYQDMRKAGYKSNDNYLKQLIEEWCEGVI 604

Query: 181  TYNNQDEGVVGLSDSLDKTDREKSQSLLLEKVAAHLQRDIARSVAVDLRGLTKVEARIVV 360
              N+Q +          + +  +  SLLLEKVAAHL  ++A S++VDL+GLTKVEARIVV
Sbjct: 605  QDNDQCQDDF---KPCKRAEFGRPHSLLLEKVAAHLHHNVAESLSVDLQGLTKVEARIVV 661

Query: 361  LAVLRMIKEKYRIGDPIEDDVDIILEV-REESAGATNYSEVQDAVVKLLRDELGLCIILT 537
            LAVLRM+KE Y  G  ++DD+ I L + + +   AT  +EV+DA+ KLL +ELGL +++ 
Sbjct: 662  LAVLRMVKENYIQGHLVKDDMSITLGIDKVDVLPATQKAEVKDAIFKLLHNELGLEVLIV 721

Query: 538  GPR-VSPIRNDVGNPPATDLIHEKVAMK--VLESSARRPAILRRVKVTRESMYQWLQKRV 708
             PR  + +  D+  P  +     K + +  +  SSARRP +L+R+KVTR S++ WLQ++ 
Sbjct: 722  VPRYTADLETDLEIPLNSYQNWSKSSGRENIRVSSARRPLVLQRLKVTRNSLHSWLQRKA 781

Query: 709  G 711
            G
Sbjct: 782  G 782


>ref|NP_195903.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
            gi|332278227|sp|Q8GYL7.3|PP361_ARATH RecName:
            Full=Pentatricopeptide repeat-containing protein
            At5g02830, chloroplastic; Flags: Precursor
            gi|332003140|gb|AED90523.1| pentatricopeptide
            repeat-containing protein [Arabidopsis thaliana]
          Length = 852

 Score =  220 bits (560), Expect = 3e-55
 Identities = 127/237 (53%), Positives = 159/237 (67%), Gaps = 2/237 (0%)
 Frame = +1

Query: 1    YGVKPNLVTYNTLLRARSRYGSLHEVKQCLAIYQHMRKAGYSPYDYFLKELVEEWCEGVI 180
            Y +KPN VTYNTLL+ARS+YGSL EV+QCLAIYQ MR AGY P D+FLKEL+EEWCEGVI
Sbjct: 623  YQIKPNWVTYNTLLKARSKYGSLLEVRQCLAIYQDMRNAGYKPNDHFLKELIEEWCEGVI 682

Query: 181  TYNNQDEGVVGLSDSLDKTDREKSQSLLLEKVAAHLQRDIARSVAVDLRGLTKVEARIVV 360
              N Q +  +  SD  +  +  +  SLL+EKVA H+Q   A ++A+DL+GLTK+EAR+VV
Sbjct: 683  QENGQSQDKI--SDQ-EGDNAGRPVSLLIEKVATHMQERTAGNLAIDLQGLTKIEARLVV 739

Query: 361  LAVLRMIKEKYRIGDPIEDDVDIILEVRE-ESAGATNYSEVQDAVVKLLRDELGLCIILT 537
            LAVLRMIKE Y  GD + DDV II+   E  +        VQ+A+VKLLRDEL L ++  
Sbjct: 740  LAVLRMIKEDYMRGDVVIDDVLIIIGTDEANTVSGKQEITVQEALVKLLRDELSLVVLPA 799

Query: 538  GPRVSPIRNDVGNPPAT-DLIHEKVAMKVLESSARRPAILRRVKVTRESMYQWLQKR 705
            G      RN + +     D   E     V  SS RRPAIL R+ VT+ S+YQWLQ+R
Sbjct: 800  GQ-----RNIIQDAHCVDDADQENTKSFVSISSTRRPAILERLMVTKASLYQWLQRR 851