BLASTX nr result

ID: Coptis21_contig00021353 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00021353
         (235 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI28022.3| unnamed protein product [Vitis vinifera]              152   3e-35
ref|XP_002280611.1| PREDICTED: CRS2-associated factor 1, chlorop...   152   3e-35
emb|CAN76866.1| hypothetical protein VITISV_012308 [Vitis vinifera]   152   3e-35
ref|XP_002332503.1| predicted protein [Populus trichocarpa] gi|2...   145   3e-33
ref|XP_002535109.1| conserved hypothetical protein [Ricinus comm...   141   5e-32

>emb|CBI28022.3| unnamed protein product [Vitis vinifera]
          Length = 723

 Score =  152 bits (384), Expect = 3e-35
 Identities = 69/78 (88%), Positives = 76/78 (97%)
 Frame = -1

Query: 235 KYVQSRDEILGDPLMEDEIKELVHGCLKTKRQLNMGRDGLTHNMLDNIHAHWKRRRVCKI 56
           +YV+SR+EILG+PL E+EIKELV GC+K+KRQLNMGRDGLTHNMLDNIHAHWKRRRVCKI
Sbjct: 231 RYVRSREEILGEPLTEEEIKELVQGCVKSKRQLNMGRDGLTHNMLDNIHAHWKRRRVCKI 290

Query: 55  KCKGVCTVDMDNVRQQLE 2
           KCKGVCTVDMDNVRQQLE
Sbjct: 291 KCKGVCTVDMDNVRQQLE 308


>ref|XP_002280611.1| PREDICTED: CRS2-associated factor 1, chloroplastic [Vitis vinifera]
          Length = 752

 Score =  152 bits (384), Expect = 3e-35
 Identities = 69/78 (88%), Positives = 76/78 (97%)
 Frame = -1

Query: 235 KYVQSRDEILGDPLMEDEIKELVHGCLKTKRQLNMGRDGLTHNMLDNIHAHWKRRRVCKI 56
           +YV+SR+EILG+PL E+EIKELV GC+K+KRQLNMGRDGLTHNMLDNIHAHWKRRRVCKI
Sbjct: 231 RYVRSREEILGEPLTEEEIKELVQGCVKSKRQLNMGRDGLTHNMLDNIHAHWKRRRVCKI 290

Query: 55  KCKGVCTVDMDNVRQQLE 2
           KCKGVCTVDMDNVRQQLE
Sbjct: 291 KCKGVCTVDMDNVRQQLE 308


>emb|CAN76866.1| hypothetical protein VITISV_012308 [Vitis vinifera]
          Length = 393

 Score =  152 bits (384), Expect = 3e-35
 Identities = 69/78 (88%), Positives = 76/78 (97%)
 Frame = -1

Query: 235 KYVQSRDEILGDPLMEDEIKELVHGCLKTKRQLNMGRDGLTHNMLDNIHAHWKRRRVCKI 56
           +YV+SR+EILG+PL E+EIKELV GC+K+KRQLNMGRDGLTHNMLDNIHAHWKRRRVCKI
Sbjct: 231 RYVRSREEILGEPLTEEEIKELVQGCVKSKRQLNMGRDGLTHNMLDNIHAHWKRRRVCKI 290

Query: 55  KCKGVCTVDMDNVRQQLE 2
           KCKGVCTVDMDNVRQQLE
Sbjct: 291 KCKGVCTVDMDNVRQQLE 308


>ref|XP_002332503.1| predicted protein [Populus trichocarpa] gi|222832483|gb|EEE70960.1|
           predicted protein [Populus trichocarpa]
          Length = 699

 Score =  145 bits (367), Expect = 3e-33
 Identities = 66/78 (84%), Positives = 73/78 (93%)
 Frame = -1

Query: 235 KYVQSRDEILGDPLMEDEIKELVHGCLKTKRQLNMGRDGLTHNMLDNIHAHWKRRRVCKI 56
           +Y ++R+EILGDPL ++EI+ELV GCLK KRQLNMGRDGLTHNMLDNIHAHWKRRRVCKI
Sbjct: 235 RYAKTREEILGDPLTQEEIQELVDGCLKAKRQLNMGRDGLTHNMLDNIHAHWKRRRVCKI 294

Query: 55  KCKGVCTVDMDNVRQQLE 2
           KCKGVCTVDMDNV QQLE
Sbjct: 295 KCKGVCTVDMDNVCQQLE 312


>ref|XP_002535109.1| conserved hypothetical protein [Ricinus communis]
           gi|223524018|gb|EEF27274.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 748

 Score =  141 bits (356), Expect = 5e-32
 Identities = 64/78 (82%), Positives = 71/78 (91%)
 Frame = -1

Query: 235 KYVQSRDEILGDPLMEDEIKELVHGCLKTKRQLNMGRDGLTHNMLDNIHAHWKRRRVCKI 56
           +YV SR+EILG+PL  +E+K L+ GCLKT+RQLNMGRDGLTHNMLDNIHAHWKRRRVCKI
Sbjct: 239 RYVYSREEILGEPLTTEEVKILIEGCLKTRRQLNMGRDGLTHNMLDNIHAHWKRRRVCKI 298

Query: 55  KCKGVCTVDMDNVRQQLE 2
           KC GVCTVDMDNV QQLE
Sbjct: 299 KCMGVCTVDMDNVCQQLE 316


Top