BLASTX nr result

ID: Coptis21_contig00020949 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00020949
         (696 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_001237022.1| uncharacterized protein LOC100305555 precurs...   219   4e-55
ref|XP_002263869.1| PREDICTED: lamin-like protein [Vitis vinifer...   219   4e-55
emb|CAN70727.1| hypothetical protein VITISV_028080 [Vitis vinifera]   218   9e-55
ref|XP_004160339.1| PREDICTED: lamin-like protein-like [Cucumis ...   211   1e-52
ref|XP_004137655.1| PREDICTED: lamin-like protein-like [Cucumis ...   210   2e-52

>ref|NP_001237022.1| uncharacterized protein LOC100305555 precursor [Glycine max]
           gi|255625899|gb|ACU13294.1| unknown [Glycine max]
          Length = 170

 Score =  219 bits (558), Expect = 4e-55
 Identities = 99/122 (81%), Positives = 107/122 (87%)
 Frame = +1

Query: 106 VRATDHIVGANKGWNPGINYTLWANNHTFYVGDLISFRYAKNQYNVFRVNETGYDNCTTE 285
           V ATDHIVGAN+GWNPG NYTLWANNHTFYVGDLISFRY KNQYNVF VN+TGYDNCTTE
Sbjct: 21  VTATDHIVGANRGWNPGFNYTLWANNHTFYVGDLISFRYQKNQYNVFEVNQTGYDNCTTE 80

Query: 286 GATGNWTSGKDFIPLDEAKRYYFICGNGGCFSGMKVSVLVHSLPSPPTAAGVAGRRSDKS 465
           GA GNW+SGKDFIPL++AKRYYFICGNG CFSGMKVSV+VH LP PPT+A  A   S KS
Sbjct: 81  GAVGNWSSGKDFIPLNKAKRYYFICGNGQCFSGMKVSVVVHPLPPPPTSAVAAQHSSPKS 140

Query: 466 VA 471
            +
Sbjct: 141 AS 142


>ref|XP_002263869.1| PREDICTED: lamin-like protein [Vitis vinifera]
           gi|298204685|emb|CBI25183.3| unnamed protein product
           [Vitis vinifera]
          Length = 168

 Score =  219 bits (558), Expect = 4e-55
 Identities = 100/125 (80%), Positives = 109/125 (87%)
 Frame = +1

Query: 106 VRATDHIVGANKGWNPGINYTLWANNHTFYVGDLISFRYAKNQYNVFRVNETGYDNCTTE 285
           V ATDHIVGAN+GWNPGINYTLWANNHTFYV DLISFRY KNQYNVF VN+TGYDNCTT+
Sbjct: 18  VTATDHIVGANRGWNPGINYTLWANNHTFYVNDLISFRYQKNQYNVFEVNQTGYDNCTTD 77

Query: 286 GATGNWTSGKDFIPLDEAKRYYFICGNGGCFSGMKVSVLVHSLPSPPTAAGVAGRRSDKS 465
            ATGNW+SGKDFI LD+AKRYYFICGNGGCFSGMKVSVLVH LP+PP+A+  A   S  +
Sbjct: 78  SATGNWSSGKDFILLDKAKRYYFICGNGGCFSGMKVSVLVHPLPTPPSASTAAAEISKPN 137

Query: 466 VAATR 480
            AA R
Sbjct: 138 SAAAR 142


>emb|CAN70727.1| hypothetical protein VITISV_028080 [Vitis vinifera]
          Length = 168

 Score =  218 bits (555), Expect = 9e-55
 Identities = 99/125 (79%), Positives = 109/125 (87%)
 Frame = +1

Query: 106 VRATDHIVGANKGWNPGINYTLWANNHTFYVGDLISFRYAKNQYNVFRVNETGYDNCTTE 285
           V ATDHIVGAN+GWNPG+NYTLWANNHTFYV DLISFRY KNQYNVF VN+TGYDNCTT+
Sbjct: 18  VTATDHIVGANRGWNPGMNYTLWANNHTFYVNDLISFRYQKNQYNVFEVNQTGYDNCTTD 77

Query: 286 GATGNWTSGKDFIPLDEAKRYYFICGNGGCFSGMKVSVLVHSLPSPPTAAGVAGRRSDKS 465
            ATGNW+SGKDFI LD+AKRYYFICGNGGCFSGMKVSVLVH LP+PP+A+  A   S  +
Sbjct: 78  SATGNWSSGKDFILLDKAKRYYFICGNGGCFSGMKVSVLVHPLPTPPSASTAAAEISKPN 137

Query: 466 VAATR 480
            AA R
Sbjct: 138 SAAAR 142


>ref|XP_004160339.1| PREDICTED: lamin-like protein-like [Cucumis sativus]
          Length = 171

 Score =  211 bits (536), Expect = 1e-52
 Identities = 92/109 (84%), Positives = 102/109 (93%)
 Frame = +1

Query: 106 VRATDHIVGANKGWNPGINYTLWANNHTFYVGDLISFRYAKNQYNVFRVNETGYDNCTTE 285
           V ATDHIVGAN+GWNPGINYTLWANNHTFYVGDLISFRY KNQYNVF VN+TGYDNCT E
Sbjct: 23  VSATDHIVGANRGWNPGINYTLWANNHTFYVGDLISFRYQKNQYNVFEVNQTGYDNCTIE 82

Query: 286 GATGNWTSGKDFIPLDEAKRYYFICGNGGCFSGMKVSVLVHSLPSPPTA 432
           GA+GNW+SGKDFIPLD+A+RYYFICGNG CF+GMKV+VLVH LP PP++
Sbjct: 83  GASGNWSSGKDFIPLDKAQRYYFICGNGQCFNGMKVTVLVHPLPPPPSS 131


>ref|XP_004137655.1| PREDICTED: lamin-like protein-like [Cucumis sativus]
          Length = 171

 Score =  210 bits (535), Expect = 2e-52
 Identities = 91/109 (83%), Positives = 102/109 (93%)
 Frame = +1

Query: 106 VRATDHIVGANKGWNPGINYTLWANNHTFYVGDLISFRYAKNQYNVFRVNETGYDNCTTE 285
           V ATDHIVGAN+GWNPGINYTLWANNHTFYVGDLISFRY KNQYNVF VN+TGYDNCT E
Sbjct: 23  VSATDHIVGANRGWNPGINYTLWANNHTFYVGDLISFRYQKNQYNVFEVNQTGYDNCTIE 82

Query: 286 GATGNWTSGKDFIPLDEAKRYYFICGNGGCFSGMKVSVLVHSLPSPPTA 432
           GA+GNW+SGKDFIPLD+A+RYYFICGNG CF+GMKV++LVH LP PP++
Sbjct: 83  GASGNWSSGKDFIPLDKAQRYYFICGNGQCFNGMKVTILVHPLPPPPSS 131


Top