BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00020918
         (321 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAZ03964.1| Ycf3 [Ranunculus macranthus]                            84   9e-15
ref|YP_007317249.1| photosystem I assembly protein Ycf3 (chlorop...    84   1e-14
ref|YP_636300.1| photosystem I assembly protein Ycf3 [Eucalyptus...    84   1e-14
ref|YP_086967.1| photosystem I assembly protein Ycf3 [Panax gins...    84   1e-14
gb|AFB70727.1| photosystem I assembly protein Ycf3, partial (chl...    84   1e-14

>gb|AAZ03964.1| Ycf3 [Ranunculus macranthus]
          Length = 170

 Score = 84.3 bits (207), Expect = 9e-15
 Identities = 40/43 (93%), Positives = 42/43 (97%)
 Frame = +2

Query: 98  MPRSRINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYKDAS 226
           MPRSRINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYY+D +
Sbjct: 1   MPRSRINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRDGA 43


>ref|YP_007317249.1| photosystem I assembly protein Ycf3 (chloroplast) [Camellia
           sinensis] gi|430728273|gb|AGA55597.1| photosystem I
           assembly protein Ycf3 (chloroplast) [Camellia sinensis]
          Length = 168

 Score = 84.0 bits (206), Expect = 1e-14
 Identities = 40/41 (97%), Positives = 41/41 (100%)
 Frame = +2

Query: 98  MPRSRINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYKD 220
           MPRSRINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYY+D
Sbjct: 1   MPRSRINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRD 41


>ref|YP_636300.1| photosystem I assembly protein Ycf3 [Eucalyptus globulus subsp.
           globulus] gi|164597810|ref|NP_084670.3| photosystem I
           assembly protein Ycf3 [Oenothera elata subsp. hookeri]
           gi|169142700|ref|YP_001687127.1| photosystem I assembly
           protein Ycf3 [Oenothera argillicola]
           gi|169142850|ref|YP_001687273.1| photosystem I assembly
           protein Ycf3 [Oenothera glazioviana]
           gi|169142935|ref|YP_001687357.1| photosystem I assembly
           protein Ycf3 [Oenothera biennis]
           gi|169143021|ref|YP_001687441.1| photosystem I assembly
           protein Ycf3 [Oenothera parviflora]
           gi|309322450|ref|YP_003933963.1| hypothetical
           chloroplast RF34 [Eucalyptus grandis]
           gi|313199703|ref|YP_004021317.1| hypothetical
           chloroplast RF34 [Theobroma cacao]
           gi|122239624|sp|Q49KZ7.1|YCF3_EUCGG RecName:
           Full=Photosystem I assembly protein ycf3
           gi|172045804|sp|Q9MTP0.3|YCF3_OENEH RecName:
           Full=Photosystem I assembly protein ycf3
           gi|60460810|gb|AAX21030.1| ycf3 protein [Eucalyptus
           globulus subsp. globulus] gi|159792938|gb|ABW98694.1|
           photosystem I assembly protein Ycf3 [Oenothera
           argillicola] gi|159793108|gb|ABW98862.1| photosystem I
           assembly protein Ycf3 [Oenothera biennis]
           gi|159895462|gb|ABX10027.1| photosystem I assembly
           protein Ycf3 [Oenothera glazioviana]
           gi|159895547|gb|ABX10111.1| photosystem I assembly
           protein Ycf3 [Oenothera parviflora]
           gi|162423677|emb|CAB67135.2| photosystem I assembly
           protein Ycf3 [Oenothera elata subsp. hookeri]
           gi|290488970|gb|ADD30869.1| putative RF3 protein
           [Euonymus americanus] gi|308223284|gb|ADO23592.1|
           hypothetical chloroplast RF34 [Eucalyptus grandis]
           gi|309321267|gb|ADO64810.1| hypothetical chloroplast
           RF34 [Theobroma cacao] gi|328924784|gb|ADO64891.2|
           hypothetical chloroplast R34 [Theobroma cacao]
           gi|371925937|gb|AEX57727.1| hypothetical chloroplast
           RF34 (chloroplast) [Theobroma cacao]
           gi|371926019|gb|AEX57808.1| hypothetical chloroplast
           RF34 (chloroplast) [Theobroma cacao]
           gi|371926101|gb|AEX57889.1| hypothetical chloroplast
           RF34 (chloroplast) [Theobroma cacao]
           gi|371926183|gb|AEX57970.1| hypothetical chloroplast
           RF34 (chloroplast) [Theobroma cacao]
           gi|371926265|gb|AEX58051.1| hypothetical chloroplast
           RF34 (chloroplast) [Theobroma cacao]
           gi|371926347|gb|AEX58132.1| hypothetical chloroplast
           RF34 (chloroplast) [Theobroma cacao]
           gi|371926429|gb|AEX58213.1| hypothetical chloroplast
           RF34 (chloroplast) [Theobroma cacao]
           gi|371926511|gb|AEX58294.1| hypothetical chloroplast
           RF34 (chloroplast) [Theobroma cacao]
           gi|371926593|gb|AEX58375.1| hypothetical chloroplast
           RF34 (chloroplast) [Theobroma cacao]
           gi|371926675|gb|AEX58456.1| hypothetical chloroplast
           RF34 (chloroplast) [Theobroma grandiflorum]
           gi|371926757|gb|AEX58537.1| hypothetical chloroplast
           RF34 (chloroplast) [Theobroma cacao]
          Length = 168

 Score = 84.0 bits (206), Expect = 1e-14
 Identities = 40/41 (97%), Positives = 41/41 (100%)
 Frame = +2

Query: 98  MPRSRINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYKD 220
           MPRSRINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYY+D
Sbjct: 1   MPRSRINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRD 41


>ref|YP_086967.1| photosystem I assembly protein Ycf3 [Panax ginseng]
           gi|359422145|ref|YP_004935553.1| photosystem I assembly
           protein Ycf3 (chloroplast) [Eleutherococcus senticosus]
           gi|68053100|sp|Q68S05.1|YCF3_PANGI RecName:
           Full=Photosystem I assembly protein ycf3
           gi|51235314|gb|AAT98510.1| ycf3 protein [Panax ginseng]
           gi|347448208|gb|AEO92620.1| photosystem I assembly
           protein Ycf3 (chloroplast) [Eleutherococcus senticosus]
          Length = 168

 Score = 84.0 bits (206), Expect = 1e-14
 Identities = 40/41 (97%), Positives = 41/41 (100%)
 Frame = +2

Query: 98  MPRSRINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYKD 220
           MPRSRINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYY+D
Sbjct: 1   MPRSRINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRD 41


>gb|AFB70727.1| photosystem I assembly protein Ycf3, partial (chloroplast) [Mollugo
           verticillata]
          Length = 217

 Score = 84.0 bits (206), Expect = 1e-14
 Identities = 40/41 (97%), Positives = 41/41 (100%)
 Frame = +2

Query: 98  MPRSRINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYKD 220
           MPRSRINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYY+D
Sbjct: 1   MPRSRINGNFIDKTFSIVANILLRIIPTTSGEKEAFTYYRD 41