BLASTX nr result
ID: Coptis21_contig00019930
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00019930
(902 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002972446.1| hypothetical protein SELMODRAFT_97073 [Selag... 77 3e-13
ref|XP_002984278.1| hypothetical protein SELMODRAFT_119719 [Sela... 77 3e-13
gb|AAF79833.1|AC026875_13 T6D22.23 [Arabidopsis thaliana] 70 5e-12
gb|AAF18258.1|AC011438_20 T23G18.1 [Arabidopsis thaliana] 70 5e-12
ref|NP_172293.2| DNA ligase 1 [Arabidopsis thaliana] gi|27735188... 70 5e-12
>ref|XP_002972446.1| hypothetical protein SELMODRAFT_97073 [Selaginella moellendorffii]
gi|300159913|gb|EFJ26532.1| hypothetical protein
SELMODRAFT_97073 [Selaginella moellendorffii]
Length = 638
Score = 76.6 bits (187), Expect(3) = 3e-13
Identities = 37/65 (56%), Positives = 49/65 (75%)
Frame = -1
Query: 206 MVINKSSRMKMTEILCNAFQIVITTTLNDLTAVGYLSSNKIATSFSGVELGIGESDLIKA 27
M+ N+S R+ MTEILCNAF+ VI TT DL V YLS+NKIA + G+ELGIG++ +IKA
Sbjct: 34 MISNESGRLVMTEILCNAFRTVIATTPQDLLPVVYLSANKIAPAHDGIELGIGDASIIKA 93
Query: 26 VAKTY 12
+A +
Sbjct: 94 LADAF 98
Score = 23.5 bits (49), Expect(3) = 3e-13
Identities = 12/25 (48%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Frame = -2
Query: 289 FDTNSAAFWNEGESV--LFFVSCPD 221
FD AAFW + E V LFF D
Sbjct: 9 FDPRKAAFWEDKEPVPFLFFARVMD 33
Score = 20.8 bits (42), Expect(3) = 3e-13
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = -3
Query: 240 FLFLARIFDMV 208
FLF AR+ DM+
Sbjct: 25 FLFFARVMDMI 35
>ref|XP_002984278.1| hypothetical protein SELMODRAFT_119719 [Selaginella moellendorffii]
gi|300148127|gb|EFJ14788.1| hypothetical protein
SELMODRAFT_119719 [Selaginella moellendorffii]
Length = 638
Score = 76.6 bits (187), Expect(3) = 3e-13
Identities = 37/65 (56%), Positives = 49/65 (75%)
Frame = -1
Query: 206 MVINKSSRMKMTEILCNAFQIVITTTLNDLTAVGYLSSNKIATSFSGVELGIGESDLIKA 27
M+ N+S R+ MTEILCNAF+ VI TT DL V YLS+NKIA + G+ELGIG++ +IKA
Sbjct: 34 MISNESGRLVMTEILCNAFRTVIATTPQDLLPVVYLSANKIAPAHDGIELGIGDASIIKA 93
Query: 26 VAKTY 12
+A +
Sbjct: 94 LADAF 98
Score = 23.5 bits (49), Expect(3) = 3e-13
Identities = 12/25 (48%), Positives = 13/25 (52%), Gaps = 2/25 (8%)
Frame = -2
Query: 289 FDTNSAAFWNEGESV--LFFVSCPD 221
FD AAFW + E V LFF D
Sbjct: 9 FDPRKAAFWEDKEPVPFLFFARVMD 33
Score = 20.8 bits (42), Expect(3) = 3e-13
Identities = 7/11 (63%), Positives = 9/11 (81%)
Frame = -3
Query: 240 FLFLARIFDMV 208
FLF AR+ DM+
Sbjct: 25 FLFFARVMDMI 35
>gb|AAF79833.1|AC026875_13 T6D22.23 [Arabidopsis thaliana]
Length = 839
Score = 70.1 bits (170), Expect(2) = 5e-12
Identities = 33/65 (50%), Positives = 48/65 (73%)
Frame = -1
Query: 206 MVINKSSRMKMTEILCNAFQIVITTTLNDLTAVGYLSSNKIATSFSGVELGIGESDLIKA 27
++ N+S R+ +T+ILCN + VI TT DL A YLS+N+IA + GVELGIGES +IKA
Sbjct: 186 LISNESGRIVITDILCNMLRTVIATTPEDLVATVYLSANEIAPAHEGVELGIGESTIIKA 245
Query: 26 VAKTY 12
+++ +
Sbjct: 246 ISEAF 250
Score = 27.3 bits (59), Expect(2) = 5e-12
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -2
Query: 310 LEKNPADFDTNSAAFWNEGESVLF 239
L+K P DFD + W +GE V F
Sbjct: 154 LKKKPNDFDPEKMSCWEKGERVPF 177
>gb|AAF18258.1|AC011438_20 T23G18.1 [Arabidopsis thaliana]
Length = 794
Score = 70.1 bits (170), Expect(2) = 5e-12
Identities = 33/65 (50%), Positives = 48/65 (73%)
Frame = -1
Query: 206 MVINKSSRMKMTEILCNAFQIVITTTLNDLTAVGYLSSNKIATSFSGVELGIGESDLIKA 27
++ N+S R+ +T+ILCN + VI TT DL A YLS+N+IA + GVELGIGES +IKA
Sbjct: 186 LISNESGRIVITDILCNMLRTVIATTPEDLVATVYLSANEIAPAHEGVELGIGESTIIKA 245
Query: 26 VAKTY 12
+++ +
Sbjct: 246 ISEAF 250
Score = 27.3 bits (59), Expect(2) = 5e-12
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -2
Query: 310 LEKNPADFDTNSAAFWNEGESVLF 239
L+K P DFD + W +GE V F
Sbjct: 154 LKKKPNDFDPEKMSCWEKGERVPF 177
>ref|NP_172293.2| DNA ligase 1 [Arabidopsis thaliana]
gi|27735188|sp|Q42572.2|DNLI1_ARATH RecName: Full=DNA
ligase 1; Short=AtLIG1; AltName: Full=DNA ligase I;
AltName: Full=Polydeoxyribonucleotide synthase [ATP] 1;
Flags: Precursor gi|26449576|dbj|BAC41914.1| putative
DNA ligase [Arabidopsis thaliana]
gi|29029040|gb|AAO64899.1| At1g08130 [Arabidopsis
thaliana] gi|332190130|gb|AEE28251.1| DNA ligase 1
[Arabidopsis thaliana]
Length = 790
Score = 70.1 bits (170), Expect(2) = 5e-12
Identities = 33/65 (50%), Positives = 48/65 (73%)
Frame = -1
Query: 206 MVINKSSRMKMTEILCNAFQIVITTTLNDLTAVGYLSSNKIATSFSGVELGIGESDLIKA 27
++ N+S R+ +T+ILCN + VI TT DL A YLS+N+IA + GVELGIGES +IKA
Sbjct: 186 LISNESGRIVITDILCNMLRTVIATTPEDLVATVYLSANEIAPAHEGVELGIGESTIIKA 245
Query: 26 VAKTY 12
+++ +
Sbjct: 246 ISEAF 250
Score = 27.3 bits (59), Expect(2) = 5e-12
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -2
Query: 310 LEKNPADFDTNSAAFWNEGESVLF 239
L+K P DFD + W +GE V F
Sbjct: 154 LKKKPNDFDPEKMSCWEKGERVPF 177