BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00019560
         (243 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat...    94   1e-17
emb|CBI31172.3| unnamed protein product [Vitis vinifera]               94   1e-17
ref|XP_002883423.1| pentatricopeptide repeat-containing protein ...    84   2e-14
ref|NP_188975.3| pentatricopeptide repeat-containing protein [Ar...    83   2e-14
ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pen...    82   3e-14

>ref|XP_002266469.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Vitis vinifera]
          Length = 709

 Score = 93.6 bits (231), Expect = 1e-17
 Identities = 50/81 (61%), Positives = 62/81 (76%), Gaps = 2/81 (2%)
 Frame = -3

Query: 241 IIKSFLEKPRKIKSKSQANQLHAQILKTN-PSYTSMLSLLSIYSNLGYLPDSLLIFNNFT 65
           + K+ L+ P  +KSKSQA QLHAQIL+T+ PS + + ++LSIYSNL  L DSLLIFN+  
Sbjct: 7   LCKTLLQNPSSVKSKSQAKQLHAQILRTSLPSPSLLSTILSIYSNLNLLHDSLLIFNSLP 66

Query: 64  S-PCTIAWKSIIRCYTSLALF 5
           S P T+AWKSIIRCYTS  LF
Sbjct: 67  SPPTTLAWKSIIRCYTSHGLF 87


>emb|CBI31172.3| unnamed protein product [Vitis vinifera]
          Length = 644

 Score = 93.6 bits (231), Expect = 1e-17
 Identities = 50/81 (61%), Positives = 62/81 (76%), Gaps = 2/81 (2%)
 Frame = -3

Query: 241 IIKSFLEKPRKIKSKSQANQLHAQILKTN-PSYTSMLSLLSIYSNLGYLPDSLLIFNNFT 65
           + K+ L+ P  +KSKSQA QLHAQIL+T+ PS + + ++LSIYSNL  L DSLLIFN+  
Sbjct: 7   LCKTLLQNPSSVKSKSQAKQLHAQILRTSLPSPSLLSTILSIYSNLNLLHDSLLIFNSLP 66

Query: 64  S-PCTIAWKSIIRCYTSLALF 5
           S P T+AWKSIIRCYTS  LF
Sbjct: 67  SPPTTLAWKSIIRCYTSHGLF 87


>ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297329263|gb|EFH59682.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 679

 Score = 83.6 bits (205), Expect = 2e-14
 Identities = 40/80 (50%), Positives = 58/80 (72%), Gaps = 1/80 (1%)
 Frame = -3

Query: 241 IIKSFLEKPRKIKSKSQANQLHAQILKTNP-SYTSMLSLLSIYSNLGYLPDSLLIFNNFT 65
           +IK+ ++ P +IKSKSQA QLHAQ ++T   S+TS   ++SIY+NL  L ++LL+F    
Sbjct: 7   LIKTLIKNPTRIKSKSQAKQLHAQFIRTQSLSHTSASIVISIYTNLKLLHEALLVFKTLE 66

Query: 64  SPCTIAWKSIIRCYTSLALF 5
           SP  +AWKS+IRC+T  +LF
Sbjct: 67  SPPVLAWKSVIRCFTDQSLF 86


>ref|NP_188975.3| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75274454|sp|Q9LW63.1|PP251_ARATH RecName:
           Full=Putative pentatricopeptide repeat-containing
           protein At3g23330 gi|11994318|dbj|BAB02277.1| unnamed
           protein product [Arabidopsis thaliana]
           gi|332643232|gb|AEE76753.1| pentatricopeptide
           repeat-containing protein [Arabidopsis thaliana]
          Length = 715

 Score = 83.2 bits (204), Expect = 2e-14
 Identities = 40/80 (50%), Positives = 58/80 (72%), Gaps = 1/80 (1%)
 Frame = -3

Query: 241 IIKSFLEKPRKIKSKSQANQLHAQILKTNP-SYTSMLSLLSIYSNLGYLPDSLLIFNNFT 65
           +IK+ ++ P +IKSKSQA QLHAQ ++T   S+TS   ++SIY+NL  L ++LL+F    
Sbjct: 7   LIKTLIKNPTRIKSKSQAKQLHAQFIRTQSLSHTSASIVISIYTNLKLLHEALLLFKTLK 66

Query: 64  SPCTIAWKSIIRCYTSLALF 5
           SP  +AWKS+IRC+T  +LF
Sbjct: 67  SPPVLAWKSVIRCFTDQSLF 86


>ref|XP_004163348.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g23330-like [Cucumis
           sativus]
          Length = 712

 Score = 82.4 bits (202), Expect = 3e-14
 Identities = 44/81 (54%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
 Frame = -3

Query: 241 IIKSFLEKPRKIKSKSQANQLHAQILKTNPSYTSMLSLL-SIYSNLGYLPDSLLIFNNFT 65
           ++K+ L  P  IKS+SQA QLHAQ+LK   S    LSLL SIYS++  L DSL +FN   
Sbjct: 8   LVKALLRNPLSIKSRSQAQQLHAQVLKFQASSLCNLSLLLSIYSHINLLHDSLRLFNTIH 67

Query: 64  SPCTIAWKSIIRCYTSLALFH 2
            P  +AWKS+IRCYTS  L H
Sbjct: 68  FPPALAWKSVIRCYTSHGLPH 88