BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00019456
         (1722 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002276540.1| PREDICTED: pentatricopeptide repeat-containi...   646   0.0  
ref|XP_004143565.1| PREDICTED: pentatricopeptide repeat-containi...   625   e-176
ref|XP_002532046.1| pentatricopeptide repeat-containing protein,...   625   e-176
ref|XP_003524280.1| PREDICTED: pentatricopeptide repeat-containi...   623   e-176
ref|XP_004169853.1| PREDICTED: pentatricopeptide repeat-containi...   617   e-174

>ref|XP_002276540.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39620,
            chloroplastic [Vitis vinifera]
            gi|296082481|emb|CBI21486.3| unnamed protein product
            [Vitis vinifera]
          Length = 489

 Score =  646 bits (1667), Expect = 0.0
 Identities = 327/453 (72%), Positives = 377/453 (83%)
 Frame = -2

Query: 1637 VSAISTHPTKNASTQHCDTIFYQLQRAHHF*LQTNSVPSSKQPLY*NQLDKYVKLIRTEH 1458
            VS +ST P +    +   +   +L R     L  N     ++PL  + L+KYVK+IRTEH
Sbjct: 48   VSCVSTRPRRKPGPKPDKSEVEELVRV----LMKNF--GGERPLI-STLNKYVKVIRTEH 100

Query: 1457 CFHLFEELGKRDKWLQCLEVFRWMQKQRWYVADNGVYSKLISVMGKKGQIRMAMWLFSEM 1278
            CF LFEELGK DKWLQCLEVFRWMQKQRWY+ADNGVYSKLISVMGKKGQ RMAMWLFSEM
Sbjct: 101  CFRLFEELGKTDKWLQCLEVFRWMQKQRWYIADNGVYSKLISVMGKKGQTRMAMWLFSEM 160

Query: 1277 CNSGCQPDTSVYNSLISAHLHSRDKSKALAKALGYFEKMKGIERCKPSIVTYNILLRAFA 1098
             NSGC+PDTSVYN+LI+AHLHSRDKSKAL KALGYF+KMKG+ERCKP+IVTYNILLRAFA
Sbjct: 161  RNSGCRPDTSVYNALITAHLHSRDKSKALIKALGYFDKMKGMERCKPNIVTYNILLRAFA 220

Query: 1097 QARKVDQVNALFKDLEESIISPDIYTYNGVMDAYGKNGMIREMESVLSQMKSNQIKPDAI 918
            QA+ V+Q NALFK+L ESI+SPDI+T+NGVMDAYGKNGMI+EMESVLS+MKSNQ KPD I
Sbjct: 221  QAQNVNQANALFKELNESIVSPDIFTFNGVMDAYGKNGMIKEMESVLSRMKSNQCKPDII 280

Query: 917  TFNLLIDSYGRRQAFEKMEQVYKSLLRSREKPTLPTFNSMITNYGKARLQDKAEAVFKKI 738
            TFN+LIDSYGRRQ F+KMEQV+KSLLRS+EKPTLPTFNSMITNYGKARL++KAE VFKK+
Sbjct: 281  TFNVLIDSYGRRQEFDKMEQVFKSLLRSKEKPTLPTFNSMITNYGKARLKEKAENVFKKM 340

Query: 737  YEMGYKPSYVTYESLITTYALCDCVSKAREIFDEMMDSKKEMHVSTLNAMLDAYCMNGLP 558
             +MGY P+++TYESLI  Y  CDC+S+AREIFDEMM SKKEM VSTLNAML+ YCMNGLP
Sbjct: 341  TDMGYAPNFITYESLIMMYGFCDCISRAREIFDEMMASKKEMKVSTLNAMLEVYCMNGLP 400

Query: 557  AEADQLFEYADKNGLLPDASTYKLLYKAYTKANMKELVQKLLKYMDNSGIVPNKKFFLEA 378
             EAD L E A KN   P +STYKLLYKAYTKA+ KEL++KLLK MD+ GI+PNK+FFLEA
Sbjct: 401  MEADLLLERARKNRPFPGSSTYKLLYKAYTKADQKELLEKLLKLMDSDGILPNKRFFLEA 460

Query: 377  LGAFGSPRAGSESSRGATGATTQLIDKQKHSAK 279
            LGAFGS  A  ES+   TG T     + ++SAK
Sbjct: 461  LGAFGSSPASQESAGSTTGLT-----RPRNSAK 488


>ref|XP_004143565.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39620,
            chloroplastic-like [Cucumis sativus]
          Length = 528

 Score =  625 bits (1612), Expect = e-176
 Identities = 305/417 (73%), Positives = 357/417 (85%)
 Frame = -2

Query: 1523 SSKQPLY*NQLDKYVKLIRTEHCFHLFEELGKRDKWLQCLEVFRWMQKQRWYVADNGVYS 1344
            S K+PL    LDKYV+++RTEHCF LFEELGKRDKWL+CLEVFRWMQKQRWY+ADNGVYS
Sbjct: 73   SDKEPLL-KTLDKYVRVMRTEHCFLLFEELGKRDKWLECLEVFRWMQKQRWYIADNGVYS 131

Query: 1343 KLISVMGKKGQIRMAMWLFSEMCNSGCQPDTSVYNSLISAHLHSRDKSKALAKALGYFEK 1164
            KLIS+MGKKGQIRMAMWLFSEM NSGC+PDTSVYN+LI+AHLHS+DK+KAL K L YFEK
Sbjct: 132  KLISIMGKKGQIRMAMWLFSEMRNSGCRPDTSVYNALITAHLHSKDKAKALVKVLSYFEK 191

Query: 1163 MKGIERCKPSIVTYNILLRAFAQARKVDQVNALFKDLEESIISPDIYTYNGVMDAYGKNG 984
            MKG+ERCKP+IVTYNIL RAFAQA KVDQVN LFKDL+ES++S DIYTYNGVMDAYGKNG
Sbjct: 192  MKGMERCKPNIVTYNILTRAFAQAAKVDQVNTLFKDLDESVVSADIYTYNGVMDAYGKNG 251

Query: 983  MIREMESVLSQMKSNQIKPDAITFNLLIDSYGRRQAFEKMEQVYKSLLRSREKPTLPTFN 804
             I+EME +L++MKSNQIKPD I+FNLLIDSYG++Q F+KMEQV+KSLLRS+E+PTLPTFN
Sbjct: 252  NIKEMELMLARMKSNQIKPDIISFNLLIDSYGKKQLFDKMEQVFKSLLRSKERPTLPTFN 311

Query: 803  SMITNYGKARLQDKAEAVFKKIYEMGYKPSYVTYESLITTYALCDCVSKAREIFDEMMDS 624
            SMITNYGKARL++KAE VF+K+ +MGY PSYVT ESLI  Y  CDCVSKAREIFD M++S
Sbjct: 312  SMITNYGKARLREKAEEVFRKMKDMGYDPSYVTCESLIMMYGHCDCVSKAREIFDGMVNS 371

Query: 623  KKEMHVSTLNAMLDAYCMNGLPAEADQLFEYADKNGLLPDASTYKLLYKAYTKANMKELV 444
             KE+ VSTLNAMLD YC+NGLP EAD LFE A    + PD++TYKLLYKAYTKA+ KEL+
Sbjct: 372  GKEVRVSTLNAMLDVYCINGLPLEADLLFESAGNMRVFPDSTTYKLLYKAYTKADKKELL 431

Query: 443  QKLLKYMDNSGIVPNKKFFLEALGAFGSPRAGSESSRGATGATTQLIDKQKHSAKAT 273
            +KLLK MD +GI+PNK+FFL+ALG  GS +   E +R  TG+       +K S+  T
Sbjct: 432  EKLLKNMDKAGIIPNKRFFLDALGTIGSSQEKPEPARTRTGSRNSDSSVEKQSSSRT 488


>ref|XP_002532046.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223528289|gb|EEF30336.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 478

 Score =  625 bits (1611), Expect = e-176
 Identities = 310/436 (71%), Positives = 368/436 (84%), Gaps = 5/436 (1%)
 Frame = -2

Query: 1637 VSAISTHPTK-----NASTQHCDTIFYQLQRAHHF*LQTNSVPSSKQPLY*NQLDKYVKL 1473
            ++ +ST P K     +  ++  D + Y L+          S  S K PL    LDKYV++
Sbjct: 45   ITCVSTRPRKKRFPISEESETEDLVRYVLR----------SFSSDKVPLV-RTLDKYVRV 93

Query: 1472 IRTEHCFHLFEELGKRDKWLQCLEVFRWMQKQRWYVADNGVYSKLISVMGKKGQIRMAMW 1293
            +RTEHCF LFEELG+RDKWLQCLEVFRWMQKQRWY+AD+GVYSKLISVMGKKGQ RMAMW
Sbjct: 94   VRTEHCFLLFEELGRRDKWLQCLEVFRWMQKQRWYIADSGVYSKLISVMGKKGQTRMAMW 153

Query: 1292 LFSEMCNSGCQPDTSVYNSLISAHLHSRDKSKALAKALGYFEKMKGIERCKPSIVTYNIL 1113
            LFSEM NSGC+PD+SVYN+LI+AHLHS+DK+KAL KALGYFEKMKG++RC+P++VTYNIL
Sbjct: 154  LFSEMRNSGCRPDSSVYNALITAHLHSKDKAKALIKALGYFEKMKGMQRCQPNVVTYNIL 213

Query: 1112 LRAFAQARKVDQVNALFKDLEESIISPDIYTYNGVMDAYGKNGMIREMESVLSQMKSNQI 933
            LRAFAQAR V+QVNALFKDL++SI+SPDIYTYNGVMDAYGKNGMIREMESVLS+MKSNQ 
Sbjct: 214  LRAFAQARNVNQVNALFKDLDQSIVSPDIYTYNGVMDAYGKNGMIREMESVLSRMKSNQC 273

Query: 932  KPDAITFNLLIDSYGRRQAFEKMEQVYKSLLRSREKPTLPTFNSMITNYGKARLQDKAEA 753
            KPD ITFNLLIDSYG++Q F+KMEQV+KSLL S+E+PTLPTFNSMITNYGKAR ++ AE+
Sbjct: 274  KPDIITFNLLIDSYGKKQDFDKMEQVFKSLLHSKERPTLPTFNSMITNYGKARQKENAES 333

Query: 752  VFKKIYEMGYKPSYVTYESLITTYALCDCVSKAREIFDEMMDSKKEMHVSTLNAMLDAYC 573
            V +K+ +M Y P+++TYESLI  Y  CD VSKAREIFD+M++S KE+ VSTLNAMLD YC
Sbjct: 334  VLQKMTKMKYTPNFITYESLIMMYGFCDSVSKAREIFDDMIESGKEVKVSTLNAMLDVYC 393

Query: 572  MNGLPAEADQLFEYADKNGLLPDASTYKLLYKAYTKANMKELVQKLLKYMDNSGIVPNKK 393
            +NGLP EAD LF+ A   GLLPD++TYKLLYKAYTKANMK+LVQKLLK+MD  GI+PNK+
Sbjct: 394  LNGLPMEADLLFDNARNVGLLPDSTTYKLLYKAYTKANMKKLVQKLLKHMDRDGIIPNKR 453

Query: 392  FFLEALGAFGSPRAGS 345
            FFL+ALGAF S  A S
Sbjct: 454  FFLDALGAFKSLPASS 469


>ref|XP_003524280.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39620,
            chloroplastic-like [Glycine max]
          Length = 503

 Score =  623 bits (1607), Expect = e-176
 Identities = 301/411 (73%), Positives = 357/411 (86%)
 Frame = -2

Query: 1544 LQTNSVPSSKQPLY*NQLDKYVKLIRTEHCFHLFEELGKRDKWLQCLEVFRWMQKQRWYV 1365
            L T+ + + K+PL    L+KYVK +RT+HCF LFEEL K D WLQCLEVFRWMQKQRWY+
Sbjct: 48   LLTSKISNDKEPLL-KTLNKYVKQVRTQHCFLLFEELAKHDNWLQCLEVFRWMQKQRWYI 106

Query: 1364 ADNGVYSKLISVMGKKGQIRMAMWLFSEMCNSGCQPDTSVYNSLISAHLHSRDKSKALAK 1185
            ADNG+YSKLISVMGKKGQ RMAMWLFSEM N+GC+PDTSVYN+LI+AHLHSRDK+KALAK
Sbjct: 107  ADNGIYSKLISVMGKKGQTRMAMWLFSEMRNTGCRPDTSVYNALITAHLHSRDKTKALAK 166

Query: 1184 ALGYFEKMKGIERCKPSIVTYNILLRAFAQARKVDQVNALFKDLEESIISPDIYTYNGVM 1005
            A+GYF+KMKG+ERCKP+IVTYNILLRAFAQAR V+QVN+LFKDL+ESI+SPDIYT+NGVM
Sbjct: 167  AIGYFQKMKGMERCKPNIVTYNILLRAFAQARNVEQVNSLFKDLDESIVSPDIYTFNGVM 226

Query: 1004 DAYGKNGMIREMESVLSQMKSNQIKPDAITFNLLIDSYGRRQAFEKMEQVYKSLLRSREK 825
            DAYGKNGMIREME+VL++MKSNQ KPD ITFNLLIDSYG++Q F KMEQV+KSLLRS+E+
Sbjct: 227  DAYGKNGMIREMEAVLARMKSNQCKPDLITFNLLIDSYGKKQEFGKMEQVFKSLLRSKER 286

Query: 824  PTLPTFNSMITNYGKARLQDKAEAVFKKIYEMGYKPSYVTYESLITTYALCDCVSKAREI 645
             +LPTFNSMI NYGKARL+DKAE VFK++ +MGY PS+VT+ESLI  Y  CDCVS+A ++
Sbjct: 287  ASLPTFNSMILNYGKARLKDKAEDVFKRMTDMGYTPSFVTHESLIYMYGFCDCVSRAAQL 346

Query: 644  FDEMMDSKKEMHVSTLNAMLDAYCMNGLPAEADQLFEYADKNGLLPDASTYKLLYKAYTK 465
            FDE+++SK  + VSTLNAMLD YC+NGLP EAD LFE A+   + PD+ST+KLLYKAYTK
Sbjct: 347  FDELVESKAHIKVSTLNAMLDVYCINGLPQEADSLFERANSIKIYPDSSTFKLLYKAYTK 406

Query: 464  ANMKELVQKLLKYMDNSGIVPNKKFFLEALGAFGSPRAGSESSRGATGATT 312
            AN KEL+ KLLK+MD  GIVPNK+FFL+ALGA  S  A SES+  AT + T
Sbjct: 407  ANQKELLDKLLKHMDKDGIVPNKRFFLDALGAVASLPANSESANAATDSKT 457


>ref|XP_004169853.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39620,
            chloroplastic-like [Cucumis sativus]
          Length = 494

 Score =  617 bits (1591), Expect = e-174
 Identities = 300/407 (73%), Positives = 350/407 (85%)
 Frame = -2

Query: 1523 SSKQPLY*NQLDKYVKLIRTEHCFHLFEELGKRDKWLQCLEVFRWMQKQRWYVADNGVYS 1344
            S K+PL    LDKYV+++RTEHCF LFEELGKRDKWL+CLEVFRWMQKQRWY+ADNGVYS
Sbjct: 73   SDKEPLL-KTLDKYVRVMRTEHCFLLFEELGKRDKWLECLEVFRWMQKQRWYIADNGVYS 131

Query: 1343 KLISVMGKKGQIRMAMWLFSEMCNSGCQPDTSVYNSLISAHLHSRDKSKALAKALGYFEK 1164
            KLIS+MGKKGQIRMAMWLFSEM NSGC+PDTSVYN+LI+AHLHS+DK+KAL K L YFEK
Sbjct: 132  KLISIMGKKGQIRMAMWLFSEMRNSGCRPDTSVYNALITAHLHSKDKAKALVKVLSYFEK 191

Query: 1163 MKGIERCKPSIVTYNILLRAFAQARKVDQVNALFKDLEESIISPDIYTYNGVMDAYGKNG 984
            MKG+ERCKP+IVTYNIL RAFAQA KVDQVN LFKDL+ES++S DIYTYNGVMDAYGKNG
Sbjct: 192  MKGMERCKPNIVTYNILTRAFAQAAKVDQVNTLFKDLDESVVSADIYTYNGVMDAYGKNG 251

Query: 983  MIREMESVLSQMKSNQIKPDAITFNLLIDSYGRRQAFEKMEQVYKSLLRSREKPTLPTFN 804
             I+EME +L++MKSNQIKPD I+FNLLIDSYG++Q F+KMEQV+KSLLRS+E+PTLPTFN
Sbjct: 252  NIKEMELMLARMKSNQIKPDIISFNLLIDSYGKKQLFDKMEQVFKSLLRSKERPTLPTFN 311

Query: 803  SMITNYGKARLQDKAEAVFKKIYEMGYKPSYVTYESLITTYALCDCVSKAREIFDEMMDS 624
            SMITNYGKARL++KAE VF+K+ +MGY PSYVT ESLI  Y  CDCVSKAREIFD M++S
Sbjct: 312  SMITNYGKARLREKAEEVFRKMKDMGYDPSYVTCESLIMMYGHCDCVSKAREIFDGMVNS 371

Query: 623  KKEMHVSTLNAMLDAYCMNGLPAEADQLFEYADKNGLLPDASTYKLLYKAYTKANMKELV 444
             KE+ VSTLNAMLD YC+NGLP EAD LFE A    + PD++TYKLLYKAYTKA+ KEL+
Sbjct: 372  GKEVRVSTLNAMLDVYCINGLPLEADLLFESAGNMRVFPDSTTYKLLYKAYTKADKKELL 431

Query: 443  QKLLKYMDNSGIVPNKKFFLEALGAFGSPRAGSESSRGATGATTQLI 303
            +KLLK MD +GI+PNK+FFL+ALG  GS +             TQ++
Sbjct: 432  EKLLKNMDKAGIIPNKRFFLDALGTIGSSQENQNLQELEQVQETQIV 478