BLASTX nr result
ID: Coptis21_contig00019426
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00019426
(248 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002330519.1| predicted protein [Populus trichocarpa] gi|2... 118 4e-25
ref|XP_004158941.1| PREDICTED: putative pentatricopeptide repeat... 114 6e-24
ref|XP_004147002.1| PREDICTED: putative pentatricopeptide repeat... 114 6e-24
ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containi... 110 9e-23
emb|CBI27939.3| unnamed protein product [Vitis vinifera] 110 9e-23
>ref|XP_002330519.1| predicted protein [Populus trichocarpa] gi|222872453|gb|EEF09584.1|
predicted protein [Populus trichocarpa]
Length = 726
Score = 118 bits (296), Expect = 4e-25
Identities = 55/82 (67%), Positives = 66/82 (80%)
Frame = +2
Query: 2 VFTWTVIITGYANINQGEMSMKYFRQMQREGVCPNESTLASCLRGCSGIAALENGRQLHS 181
+F+WTVII+GYA +Q E ++KYFRQMQREG+ PNE TLASCL GCS +A LENGRQLH+
Sbjct: 319 IFSWTVIISGYAQTDQAEKAVKYFRQMQREGIKPNEYTLASCLSGCSHMATLENGRQLHA 378
Query: 182 RIIKAGQSDDAFIASALVDLYG 247
+KAG D F+ SALVDLYG
Sbjct: 379 VAVKAGHFGDIFVGSALVDLYG 400
Score = 62.0 bits (149), Expect = 5e-08
Identities = 30/79 (37%), Positives = 44/79 (55%)
Frame = +2
Query: 8 TWTVIITGYANINQGEMSMKYFRQMQREGVCPNESTLASCLRGCSGIAALENGRQLHSRI 187
+W +++G+ + + F QM EG PN T S LR CS + E G+Q+H+ I
Sbjct: 220 SWNALLSGFYDSQTCGRGPRIFYQMLLEGFKPNMFTFISVLRSCSSLLDPEFGKQVHAHI 279
Query: 188 IKAGQSDDAFIASALVDLY 244
IK DD F+ +ALVD+Y
Sbjct: 280 IKNSSDDDDFVGTALVDMY 298
Score = 56.6 bits (135), Expect = 2e-06
Identities = 24/79 (30%), Positives = 47/79 (59%)
Frame = +2
Query: 8 TWTVIITGYANINQGEMSMKYFRQMQREGVCPNESTLASCLRGCSGIAALENGRQLHSRI 187
+W ++ GYA + G+ +K F +M+ ++ TL++ L+GC+ +L G+ LH+
Sbjct: 18 SWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKGCANTGSLREGKVLHALA 77
Query: 188 IKAGQSDDAFIASALVDLY 244
+++G D F+ +LVD+Y
Sbjct: 78 LRSGCEIDEFLGCSLVDMY 96
>ref|XP_004158941.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950-like [Cucumis sativus]
Length = 1004
Score = 114 bits (286), Expect = 6e-24
Identities = 52/81 (64%), Positives = 63/81 (77%)
Frame = +2
Query: 2 VFTWTVIITGYANINQGEMSMKYFRQMQREGVCPNESTLASCLRGCSGIAALENGRQLHS 181
+FTWTVIIT YA NQGE ++ YFRQMQ+EGV PNE TLA CL GCS +A+LE G+QLHS
Sbjct: 582 LFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGGQQLHS 641
Query: 182 RIIKAGQSDDAFIASALVDLY 244
+ K+G D F+ SALVD+Y
Sbjct: 642 MVFKSGHVSDMFVGSALVDMY 662
Score = 71.2 bits (173), Expect = 8e-11
Identities = 36/81 (44%), Positives = 50/81 (61%)
Frame = +2
Query: 2 VFTWTVIITGYANINQGEMSMKYFRQMQREGVCPNESTLASCLRGCSGIAALENGRQLHS 181
V +WT +I G S+ F++MQ EG+ PNE TLA+ L+ CS AL+ G+Q+H+
Sbjct: 178 VVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQMHA 237
Query: 182 RIIKAGQSDDAFIASALVDLY 244
+ K G D F+ SALVDLY
Sbjct: 238 QAFKLGLLLDLFVGSALVDLY 258
Score = 59.7 bits (143), Expect = 2e-07
Identities = 31/79 (39%), Positives = 42/79 (53%)
Frame = +2
Query: 8 TWTVIITGYANINQGEMSMKYFRQMQREGVCPNESTLASCLRGCSGIAALENGRQLHSRI 187
TW V++ GYA +K F M V NE TL + L+GC+ L+ G+ +HS I
Sbjct: 281 TWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLI 340
Query: 188 IKAGQSDDAFIASALVDLY 244
IK G + FI LVD+Y
Sbjct: 341 IKCGYEGNEFIGCGLVDMY 359
Score = 54.7 bits (130), Expect = 8e-06
Identities = 26/81 (32%), Positives = 42/81 (51%)
Frame = +2
Query: 2 VFTWTVIITGYANINQGEMSMKYFRQMQREGVCPNESTLASCLRGCSGIAALENGRQLHS 181
+ +W ++G + + + F M EG PN T S L CS + + GRQ+H+
Sbjct: 481 LISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHA 540
Query: 182 RIIKAGQSDDAFIASALVDLY 244
IIK D+ F+ +AL+D+Y
Sbjct: 541 HIIKNQLDDNNFVCTALIDMY 561
>ref|XP_004147002.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g09950-like [Cucumis sativus]
Length = 989
Score = 114 bits (286), Expect = 6e-24
Identities = 52/81 (64%), Positives = 63/81 (77%)
Frame = +2
Query: 2 VFTWTVIITGYANINQGEMSMKYFRQMQREGVCPNESTLASCLRGCSGIAALENGRQLHS 181
+FTWTVIIT YA NQGE ++ YFRQMQ+EGV PNE TLA CL GCS +A+LE G+QLHS
Sbjct: 582 LFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGGQQLHS 641
Query: 182 RIIKAGQSDDAFIASALVDLY 244
+ K+G D F+ SALVD+Y
Sbjct: 642 MVFKSGHVSDMFVGSALVDMY 662
Score = 71.2 bits (173), Expect = 8e-11
Identities = 36/81 (44%), Positives = 50/81 (61%)
Frame = +2
Query: 2 VFTWTVIITGYANINQGEMSMKYFRQMQREGVCPNESTLASCLRGCSGIAALENGRQLHS 181
V +WT +I G S+ F++MQ EG+ PNE TLA+ L+ CS AL+ G+Q+H+
Sbjct: 178 VVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMALDLGKQMHA 237
Query: 182 RIIKAGQSDDAFIASALVDLY 244
+ K G D F+ SALVDLY
Sbjct: 238 QAFKLGLLLDLFVGSALVDLY 258
Score = 59.7 bits (143), Expect = 2e-07
Identities = 31/79 (39%), Positives = 42/79 (53%)
Frame = +2
Query: 8 TWTVIITGYANINQGEMSMKYFRQMQREGVCPNESTLASCLRGCSGIAALENGRQLHSRI 187
TW V++ GYA +K F M V NE TL + L+GC+ L+ G+ +HS I
Sbjct: 281 TWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLI 340
Query: 188 IKAGQSDDAFIASALVDLY 244
IK G + FI LVD+Y
Sbjct: 341 IKCGYEGNEFIGCGLVDMY 359
Score = 54.7 bits (130), Expect = 8e-06
Identities = 26/81 (32%), Positives = 42/81 (51%)
Frame = +2
Query: 2 VFTWTVIITGYANINQGEMSMKYFRQMQREGVCPNESTLASCLRGCSGIAALENGRQLHS 181
+ +W ++G + + + F M EG PN T S L CS + + GRQ+H+
Sbjct: 481 LISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHA 540
Query: 182 RIIKAGQSDDAFIASALVDLY 244
IIK D+ F+ +AL+D+Y
Sbjct: 541 HIIKNQLDDNNFVCTALIDMY 561
>ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Vitis vinifera]
Length = 1005
Score = 110 bits (276), Expect = 9e-23
Identities = 55/81 (67%), Positives = 63/81 (77%)
Frame = +2
Query: 2 VFTWTVIITGYANINQGEMSMKYFRQMQREGVCPNESTLASCLRGCSGIAALENGRQLHS 181
+F WTVI+ GYA QGE ++K F QMQREGV PNE TLAS L GCS IA L++GRQLHS
Sbjct: 598 LFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHS 657
Query: 182 RIIKAGQSDDAFIASALVDLY 244
IKAGQS D F+ASALVD+Y
Sbjct: 658 MAIKAGQSGDMFVASALVDMY 678
Score = 74.7 bits (182), Expect = 7e-12
Identities = 37/81 (45%), Positives = 50/81 (61%)
Frame = +2
Query: 2 VFTWTVIITGYANINQGEMSMKYFRQMQREGVCPNESTLASCLRGCSGIAALENGRQLHS 181
V +WT +ITG+ G ++ F +M+REGV NE T A+ L+ CS LE G+Q+H+
Sbjct: 194 VVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLDLEFGKQVHA 253
Query: 182 RIIKAGQSDDAFIASALVDLY 244
IK G D F+ SALVDLY
Sbjct: 254 EAIKVGDFSDLFVGSALVDLY 274
Score = 62.0 bits (149), Expect = 5e-08
Identities = 26/81 (32%), Positives = 49/81 (60%)
Frame = +2
Query: 2 VFTWTVIITGYANINQGEMSMKYFRQMQREGVCPNESTLASCLRGCSGIAALENGRQLHS 181
+ +W +++G+ + + ++ F QM EG PN T S LR CS ++ ++ G+Q+H+
Sbjct: 497 LISWNALLSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHA 556
Query: 182 RIIKAGQSDDAFIASALVDLY 244
+I+K + F+ +ALVD+Y
Sbjct: 557 QIVKNSLDGNDFVGTALVDMY 577
>emb|CBI27939.3| unnamed protein product [Vitis vinifera]
Length = 764
Score = 110 bits (276), Expect = 9e-23
Identities = 55/81 (67%), Positives = 63/81 (77%)
Frame = +2
Query: 2 VFTWTVIITGYANINQGEMSMKYFRQMQREGVCPNESTLASCLRGCSGIAALENGRQLHS 181
+F WTVI+ GYA QGE ++K F QMQREGV PNE TLAS L GCS IA L++GRQLHS
Sbjct: 357 LFAWTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQLHS 416
Query: 182 RIIKAGQSDDAFIASALVDLY 244
IKAGQS D F+ASALVD+Y
Sbjct: 417 MAIKAGQSGDMFVASALVDMY 437
Score = 65.1 bits (157), Expect = 6e-09
Identities = 31/81 (38%), Positives = 49/81 (60%)
Frame = +2
Query: 2 VFTWTVIITGYANINQGEMSMKYFRQMQREGVCPNESTLASCLRGCSGIAALENGRQLHS 181
V +WT +ITG+ G ++ F QM EG PN T S LR CS ++ ++ G+Q+H+
Sbjct: 257 VVSWTALITGFVAEGYGS-GLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHA 315
Query: 182 RIIKAGQSDDAFIASALVDLY 244
+I+K + F+ +ALVD+Y
Sbjct: 316 QIVKNSLDGNDFVGTALVDMY 336