BLASTX nr result
ID: Coptis21_contig00019224
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis21_contig00019224 (292 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gb|AAC79620.1| putative RING zinc finger protein [Arabidopsis th... 98 8e-19 ref|NP_850310.1| RING/U-box domain-containing protein [Arabidops... 97 1e-18 ref|XP_004169429.1| PREDICTED: E3 ubiquitin-protein ligase Topor... 97 2e-18 ref|XP_004143083.1| PREDICTED: E3 ubiquitin-protein ligase Topor... 97 2e-18 ref|XP_002330333.1| predicted protein [Populus trichocarpa] gi|2... 92 3e-17 >gb|AAC79620.1| putative RING zinc finger protein [Arabidopsis thaliana] Length = 270 Score = 97.8 bits (242), Expect = 8e-19 Identities = 51/111 (45%), Positives = 71/111 (63%), Gaps = 16/111 (14%) Frame = +2 Query: 2 SCPICLEHINDRK-AAVLCICMHVYCINCIRKWTNLEKRNCPLCNSKFNSWFIKSRNSSR 178 SCPICLE++ +R+ AAV+ +C H YC+ CIRKW++ KRNCPLCN++F+SWFI S +SR Sbjct: 38 SCPICLENLTERRSAAVITVCKHGYCLACIRKWSSF-KRNCPLCNTRFDSWFIVSDFASR 96 Query: 179 QFEKETLPILNEKK---------------RNGLEVESSETRRFSHPRSVRR 286 ++ KE LPIL +++ R+ LE SS +R RS R Sbjct: 97 KYHKEQLPILRDRETLTYHRNNPSDRRRSRDVLENSSSRSRPLPWRRSFGR 147 >ref|NP_850310.1| RING/U-box domain-containing protein [Arabidopsis thaliana] gi|17473924|gb|AAL38373.1| putative RING zinc finger protein [Arabidopsis thaliana] gi|20148385|gb|AAM10083.1| putative RING zinc finger protein [Arabidopsis thaliana] gi|330254541|gb|AEC09635.1| RING/U-box domain-containing protein [Arabidopsis thaliana] Length = 296 Score = 97.4 bits (241), Expect = 1e-18 Identities = 42/74 (56%), Positives = 60/74 (81%), Gaps = 1/74 (1%) Frame = +2 Query: 2 SCPICLEHINDRK-AAVLCICMHVYCINCIRKWTNLEKRNCPLCNSKFNSWFIKSRNSSR 178 SCPICLE++ +R+ AAV+ +C H YC+ CIRKW++ KRNCPLCN++F+SWFI S +SR Sbjct: 38 SCPICLENLTERRSAAVITVCKHGYCLACIRKWSSF-KRNCPLCNTRFDSWFIVSDFASR 96 Query: 179 QFEKETLPILNEKK 220 ++ KE LPIL +++ Sbjct: 97 KYHKEQLPILRDRE 110 >ref|XP_004169429.1| PREDICTED: E3 ubiquitin-protein ligase Topors-like [Cucumis sativus] Length = 288 Score = 96.7 bits (239), Expect = 2e-18 Identities = 45/83 (54%), Positives = 57/83 (68%) Frame = +2 Query: 2 SCPICLEHINDRKAAVLCICMHVYCINCIRKWTNLEKRNCPLCNSKFNSWFIKSRNSSRQ 181 +CPICL + DR AAVL C+H YCI+CIRKW+NL KR CPLCN++F+SWF K SS+ Sbjct: 32 TCPICLRELEDRTAAVLTTCIHAYCISCIRKWSNL-KRTCPLCNAQFDSWFTKINLSSQS 90 Query: 182 FEKETLPILNEKKRNGLEVESSE 250 F KE L N + + V SS+ Sbjct: 91 FRKERLTTSNCSDKLKVGVGSSQ 113 >ref|XP_004143083.1| PREDICTED: E3 ubiquitin-protein ligase Topors-like [Cucumis sativus] Length = 288 Score = 96.7 bits (239), Expect = 2e-18 Identities = 45/83 (54%), Positives = 57/83 (68%) Frame = +2 Query: 2 SCPICLEHINDRKAAVLCICMHVYCINCIRKWTNLEKRNCPLCNSKFNSWFIKSRNSSRQ 181 +CPICL + DR AAVL C+H YCI+CIRKW+NL KR CPLCN++F+SWF K SS+ Sbjct: 32 TCPICLRELEDRTAAVLTTCIHAYCISCIRKWSNL-KRTCPLCNAQFDSWFTKINLSSQS 90 Query: 182 FEKETLPILNEKKRNGLEVESSE 250 F KE L N + + V SS+ Sbjct: 91 FRKERLTTSNCSDKLKVGVGSSQ 113 >ref|XP_002330333.1| predicted protein [Populus trichocarpa] gi|222871537|gb|EEF08668.1| predicted protein [Populus trichocarpa] Length = 289 Score = 92.4 bits (228), Expect = 3e-17 Identities = 47/107 (43%), Positives = 66/107 (61%), Gaps = 12/107 (11%) Frame = +2 Query: 2 SCPICLEHIND----RKAAVLCICMHVYCINCIRKWTNLEKRNCPLCNSKFNSWFIKSRN 169 SCP+CL+ R+ AV+ +C+H YC++CIRKW+++ KR CPLCNS+FNSWF + Sbjct: 33 SCPVCLKDFGGEEDYRRVAVIRVCLHAYCLDCIRKWSDI-KRKCPLCNSEFNSWFCRIIL 91 Query: 170 SSRQFEKETLPILNEKKR-NGLEVESSETR-------RFSHPRSVRR 286 S+R F E LP++ E +R L++ SS R R S P RR Sbjct: 92 STRNFSTEKLPVVRESRRVTPLDILSSRQRAGLNVANRRSRPLPCRR 138