BLASTX nr result
ID: Coptis21_contig00019144
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis21_contig00019144 (705 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002263449.1| PREDICTED: ribosome-recycling factor [Vitis ... 213 3e-53 emb|CAN68423.1| hypothetical protein VITISV_018268 [Vitis vinifera] 212 5e-53 dbj|BAD44436.1| putative ribosome recycling factor [Arabidopsis ... 205 8e-51 ref|NP_186829.3| ribosome recycling factor [Arabidopsis thaliana... 205 8e-51 ref|XP_002509550.1| ribosome recycling factor, putative [Ricinus... 204 1e-50 >ref|XP_002263449.1| PREDICTED: ribosome-recycling factor [Vitis vinifera] gi|296090242|emb|CBI40061.3| unnamed protein product [Vitis vinifera] Length = 258 Score = 213 bits (542), Expect = 3e-53 Identities = 108/151 (71%), Positives = 125/151 (82%) Frame = -1 Query: 705 ELSKMQTGRASAGLIDHIIVETGGAKMPLSRIAXXXXXXXXXXXVTPYDPNASKEIERAI 526 ELSK++TGRASAG++DHIIVETGG KMPLSR+A VTPYD +A K++E AI Sbjct: 98 ELSKLRTGRASAGMLDHIIVETGGVKMPLSRLAVVSVLDPKTLSVTPYDLDALKQLENAI 157 Query: 525 MSSPLGLNPQVDGQRLIVAIAPLTKEGIQAMCKVVTKSADDVKQSIRRARQKAFDIIKKA 346 +SSPLGLNP+ DG+RLI I PLTKE IQAMCKVV KS +DVKQSIRRARQKA D+IKKA Sbjct: 158 VSSPLGLNPKADGERLIAVIPPLTKEHIQAMCKVVAKSCEDVKQSIRRARQKALDMIKKA 217 Query: 345 ASSIPKDDVKRLEKEVDDLTKKYIKSAEDMC 253 SS+PKD KRLEKEVD+LTKK++KSAEDMC Sbjct: 218 GSSLPKDVAKRLEKEVDELTKKFVKSAEDMC 248 >emb|CAN68423.1| hypothetical protein VITISV_018268 [Vitis vinifera] Length = 258 Score = 212 bits (540), Expect = 5e-53 Identities = 108/151 (71%), Positives = 124/151 (82%) Frame = -1 Query: 705 ELSKMQTGRASAGLIDHIIVETGGAKMPLSRIAXXXXXXXXXXXVTPYDPNASKEIERAI 526 ELSK++TGRASAG++DHIIVETGG KMPLSR+A VTPYD +A K++E AI Sbjct: 98 ELSKLRTGRASAGMLDHIIVETGGVKMPLSRLAVVSVLDPKTLSVTPYDLDALKQLENAI 157 Query: 525 MSSPLGLNPQVDGQRLIVAIAPLTKEGIQAMCKVVTKSADDVKQSIRRARQKAFDIIKKA 346 +SSPLGLNP+ DG+RLI I PLTKE IQAMCKVV KS +DVKQSIRRARQKA D IKKA Sbjct: 158 VSSPLGLNPKADGERLIAVIPPLTKEHIQAMCKVVAKSCEDVKQSIRRARQKALDXIKKA 217 Query: 345 ASSIPKDDVKRLEKEVDDLTKKYIKSAEDMC 253 SS+PKD KRLEKEVD+LTKK++KSAEDMC Sbjct: 218 GSSLPKDVAKRLEKEVDELTKKFVKSAEDMC 248 >dbj|BAD44436.1| putative ribosome recycling factor [Arabidopsis thaliana] Length = 267 Score = 205 bits (521), Expect = 8e-51 Identities = 99/151 (65%), Positives = 126/151 (83%) Frame = -1 Query: 705 ELSKMQTGRASAGLIDHIIVETGGAKMPLSRIAXXXXXXXXXXXVTPYDPNASKEIERAI 526 +L+K++TGRA+ G++DHI+VETGG KMPL+ +A V PYDP+ KE+E+AI Sbjct: 107 DLTKLRTGRAAPGMLDHIVVETGGVKMPLNHLALVSVLDPKTLSVNPYDPDTVKELEKAI 166 Query: 525 MSSPLGLNPQVDGQRLIVAIAPLTKEGIQAMCKVVTKSADDVKQSIRRARQKAFDIIKKA 346 ++SPLGLNP++DGQRL+ +I LTKE IQAMCK+VTKS++ VKQSIRRARQKA D IKKA Sbjct: 167 VASPLGLNPKLDGQRLVASIPALTKEHIQAMCKIVTKSSEVVKQSIRRARQKALDTIKKA 226 Query: 345 ASSIPKDDVKRLEKEVDDLTKKYIKSAEDMC 253 SS+PKD+VKRLEKEVD+LTKK++KSAEDMC Sbjct: 227 GSSLPKDEVKRLEKEVDELTKKFVKSAEDMC 257 >ref|NP_186829.3| ribosome recycling factor [Arabidopsis thaliana] gi|34146850|gb|AAQ62433.1| At3g01800 [Arabidopsis thaliana] gi|51970776|dbj|BAD44080.1| putative ribosome recycling factor [Arabidopsis thaliana] gi|62319213|dbj|BAD94407.1| putative ribosome recycling factor [Arabidopsis thaliana] gi|332640195|gb|AEE73716.1| ribosome recycling factor [Arabidopsis thaliana] Length = 267 Score = 205 bits (521), Expect = 8e-51 Identities = 99/151 (65%), Positives = 126/151 (83%) Frame = -1 Query: 705 ELSKMQTGRASAGLIDHIIVETGGAKMPLSRIAXXXXXXXXXXXVTPYDPNASKEIERAI 526 +L+K++TGRA+ G++DHI+VETGG KMPL+ +A V PYDP+ KE+E+AI Sbjct: 107 DLTKLRTGRAAPGMLDHIVVETGGVKMPLNHLALVSVLDPKTLSVNPYDPDTVKELEKAI 166 Query: 525 MSSPLGLNPQVDGQRLIVAIAPLTKEGIQAMCKVVTKSADDVKQSIRRARQKAFDIIKKA 346 ++SPLGLNP++DGQRL+ +I LTKE IQAMCK+VTKS++ VKQSIRRARQKA D IKKA Sbjct: 167 VASPLGLNPKLDGQRLVASIPALTKEHIQAMCKIVTKSSEVVKQSIRRARQKALDTIKKA 226 Query: 345 ASSIPKDDVKRLEKEVDDLTKKYIKSAEDMC 253 SS+PKD+VKRLEKEVD+LTKK++KSAEDMC Sbjct: 227 GSSLPKDEVKRLEKEVDELTKKFVKSAEDMC 257 >ref|XP_002509550.1| ribosome recycling factor, putative [Ricinus communis] gi|223549449|gb|EEF50937.1| ribosome recycling factor, putative [Ricinus communis] Length = 262 Score = 204 bits (519), Expect = 1e-50 Identities = 101/151 (66%), Positives = 124/151 (82%) Frame = -1 Query: 705 ELSKMQTGRASAGLIDHIIVETGGAKMPLSRIAXXXXXXXXXXXVTPYDPNASKEIERAI 526 EL+K++TGRASAG++DHIIVET G KMPL+R+A V PYDPN +E+AI Sbjct: 102 ELTKLRTGRASAGMLDHIIVETDGVKMPLNRLAVVAVMDPKTLSVNPYDPNMVSALEKAI 161 Query: 525 MSSPLGLNPQVDGQRLIVAIAPLTKEGIQAMCKVVTKSADDVKQSIRRARQKAFDIIKKA 346 +SSPLGLNP+VDG+RLI +I PLTKE +QAMCKVV KS ++VKQS+RRARQKA D IKKA Sbjct: 162 VSSPLGLNPRVDGERLIASIPPLTKEHMQAMCKVVGKSCEEVKQSVRRARQKALDTIKKA 221 Query: 345 ASSIPKDDVKRLEKEVDDLTKKYIKSAEDMC 253 S++ KDDVKRLEKEVD+LTKK++KSAED+C Sbjct: 222 GSNLSKDDVKRLEKEVDELTKKFVKSAEDIC 252