BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00019134
         (409 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003626000.1| Pentatricopeptide repeat protein [Medicago t...    65   9e-15
ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containi...    49   2e-09
ref|XP_002313273.1| predicted protein [Populus trichocarpa] gi|2...    45   9e-09
ref|XP_004172193.1| PREDICTED: pentatricopeptide repeat-containi...    54   2e-08
ref|XP_004151307.1| PREDICTED: pentatricopeptide repeat-containi...    54   2e-08

>ref|XP_003626000.1| Pentatricopeptide repeat protein [Medicago truncatula]
           gi|355501015|gb|AES82218.1| Pentatricopeptide repeat
           protein [Medicago truncatula]
          Length = 607

 Score = 65.5 bits (158), Expect(3) = 9e-15
 Identities = 33/69 (47%), Positives = 44/69 (63%)
 Frame = +2

Query: 107 YGIDAEKGHKVCMVNL*NELVS*ETVENLVSSIPFEPYLVVWGAFL*ASGLHLSLEFGLF 286
           YGI AE  H  CMV+L       +  ENL+ ++PFEP +V+WGA L A GLH +LE G +
Sbjct: 399 YGIQAEMEHYSCMVDLYGRAGRFDEAENLIKNMPFEPDVVLWGALLAACGLHSNLELGEY 458

Query: 287 AAEAMYELK 313
           AAE +  L+
Sbjct: 459 AAERIRRLE 467



 Score = 32.0 bits (71), Expect(3) = 9e-15
 Identities = 14/25 (56%), Positives = 18/25 (72%)
 Frame = +1

Query: 10  NQITLVIVLSASAHGGLVEEDKLHF 84
           +++T V VLSA  H GLVEE + HF
Sbjct: 368 DEVTFVNVLSACVHAGLVEEGEKHF 392



 Score = 26.9 bits (58), Expect(3) = 9e-15
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +1

Query: 307 VEKRSPAMYSFLSNTRGHHRVQTRVIELRKMMKQ 408
           +E   P  YS LS  +G   V + V ELR  MK+
Sbjct: 466 LESSHPVSYSVLSKIQGEKGVWSSVNELRDTMKE 499


>ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 858

 Score = 48.9 bits (115), Expect(2) = 2e-09
 Identities = 25/73 (34%), Positives = 42/73 (57%)
 Frame = +2

Query: 104 IYGIDAEKGHKVCMVNL*NELVS*ETVENLVSSIPFEPYLVVWGAFL*ASGLHLSLEFGL 283
           ++GI   + H  CM++L            LV+SIPFE    VWGA L A+ +H ++E G 
Sbjct: 616 MFGIKPTQEHYACMIDLLGRSGKLNEAVELVNSIPFEADGFVWGALLGAARIHKNIELGQ 675

Query: 284 FAAEAMYELKRDR 322
            AA+ +++L+ ++
Sbjct: 676 KAAKMLFDLEPEK 688



 Score = 37.4 bits (85), Expect(2) = 2e-09
 Identities = 18/31 (58%), Positives = 21/31 (67%)
 Frame = +1

Query: 10  NQITLVIVLSASAHGGLVEEDKLHFESIEIM 102
           N ITLV VL A  H GLV E K +FE +E+M
Sbjct: 586 NHITLVSVLCACNHAGLVNEGKQYFEKMEVM 616


>ref|XP_002313273.1| predicted protein [Populus trichocarpa] gi|222849681|gb|EEE87228.1|
           predicted protein [Populus trichocarpa]
          Length = 680

 Score = 44.7 bits (104), Expect(2) = 9e-09
 Identities = 25/70 (35%), Positives = 36/70 (51%)
 Frame = +2

Query: 104 IYGIDAEKGHKVCMVNL*NELVS*ETVENLVSSIPFEPYLVVWGAFL*ASGLHLSLEFGL 283
           +  I   + H  CMV+L       E    L+ S+P EP   VWGA L A  +H  +E   
Sbjct: 540 VQNIKPTQMHYACMVDLLGRAGLIEEAVKLIESLPIEPDANVWGALLGACRIHGYIELAH 599

Query: 284 FAAEAMYELK 313
           +AAE +++LK
Sbjct: 600 WAAEHLFKLK 609



 Score = 39.7 bits (91), Expect(2) = 9e-09
 Identities = 16/36 (44%), Positives = 27/36 (75%)
 Frame = +1

Query: 1   LKLNQITLVIVLSASAHGGLVEEDKLHFESIEIMNI 108
           ++ + ++ + VLSA +HGGLVEE K +FE +++ NI
Sbjct: 508 VEYDSVSYIAVLSACSHGGLVEEGKKYFEHMQVQNI 543


>ref|XP_004172193.1| PREDICTED: pentatricopeptide repeat-containing protein At1g53600,
           mitochondrial-like, partial [Cucumis sativus]
          Length = 719

 Score = 53.9 bits (128), Expect(2) = 2e-08
 Identities = 29/70 (41%), Positives = 41/70 (58%)
 Frame = +2

Query: 104 IYGIDAEKGHKVCMVNL*NELVS*ETVENLVSSIPFEPYLVVWGAFL*ASGLHLSLEFGL 283
           +Y I  E  H  CMV+L       +   +LVSS+PF+P+  VWGA L AS  HL L+   
Sbjct: 567 LYDIQPEPDHYACMVDLLCRAGMFDEAVSLVSSMPFDPHQGVWGAVLGASWTHLRLDVAE 626

Query: 284 FAAEAMYELK 313
            AA+ ++EL+
Sbjct: 627 LAAQNLFELE 636



 Score = 29.6 bits (65), Expect(2) = 2e-08
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = +1

Query: 10  NQITLVIVLSASAHGGLVEEDKLHFE 87
           N IT + VLSA  H GLVEE + +F+
Sbjct: 537 NHITFLGVLSACVHVGLVEEGRRYFD 562


>ref|XP_004151307.1| PREDICTED: pentatricopeptide repeat-containing protein At1g53600,
           mitochondrial-like [Cucumis sativus]
          Length = 711

 Score = 53.9 bits (128), Expect(2) = 2e-08
 Identities = 29/70 (41%), Positives = 41/70 (58%)
 Frame = +2

Query: 104 IYGIDAEKGHKVCMVNL*NELVS*ETVENLVSSIPFEPYLVVWGAFL*ASGLHLSLEFGL 283
           +Y I  E  H  CMV+L       +   +LVSS+PF+P+  VWGA L AS  HL L+   
Sbjct: 559 LYDIQPEPDHYACMVDLLCRAGMFDEAVSLVSSMPFDPHQGVWGAVLGASWTHLRLDVAE 618

Query: 284 FAAEAMYELK 313
            AA+ ++EL+
Sbjct: 619 LAAQNLFELE 628



 Score = 29.6 bits (65), Expect(2) = 2e-08
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = +1

Query: 10  NQITLVIVLSASAHGGLVEEDKLHFE 87
           N IT + VLSA  H GLVEE + +F+
Sbjct: 529 NHITFLGVLSACVHVGLVEEGRRYFD 554