BLASTX nr result
ID: Coptis21_contig00019134
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis21_contig00019134 (409 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_003626000.1| Pentatricopeptide repeat protein [Medicago t... 65 9e-15 ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containi... 49 2e-09 ref|XP_002313273.1| predicted protein [Populus trichocarpa] gi|2... 45 9e-09 ref|XP_004172193.1| PREDICTED: pentatricopeptide repeat-containi... 54 2e-08 ref|XP_004151307.1| PREDICTED: pentatricopeptide repeat-containi... 54 2e-08 >ref|XP_003626000.1| Pentatricopeptide repeat protein [Medicago truncatula] gi|355501015|gb|AES82218.1| Pentatricopeptide repeat protein [Medicago truncatula] Length = 607 Score = 65.5 bits (158), Expect(3) = 9e-15 Identities = 33/69 (47%), Positives = 44/69 (63%) Frame = +2 Query: 107 YGIDAEKGHKVCMVNL*NELVS*ETVENLVSSIPFEPYLVVWGAFL*ASGLHLSLEFGLF 286 YGI AE H CMV+L + ENL+ ++PFEP +V+WGA L A GLH +LE G + Sbjct: 399 YGIQAEMEHYSCMVDLYGRAGRFDEAENLIKNMPFEPDVVLWGALLAACGLHSNLELGEY 458 Query: 287 AAEAMYELK 313 AAE + L+ Sbjct: 459 AAERIRRLE 467 Score = 32.0 bits (71), Expect(3) = 9e-15 Identities = 14/25 (56%), Positives = 18/25 (72%) Frame = +1 Query: 10 NQITLVIVLSASAHGGLVEEDKLHF 84 +++T V VLSA H GLVEE + HF Sbjct: 368 DEVTFVNVLSACVHAGLVEEGEKHF 392 Score = 26.9 bits (58), Expect(3) = 9e-15 Identities = 14/34 (41%), Positives = 18/34 (52%) Frame = +1 Query: 307 VEKRSPAMYSFLSNTRGHHRVQTRVIELRKMMKQ 408 +E P YS LS +G V + V ELR MK+ Sbjct: 466 LESSHPVSYSVLSKIQGEKGVWSSVNELRDTMKE 499 >ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430, chloroplastic-like [Glycine max] Length = 858 Score = 48.9 bits (115), Expect(2) = 2e-09 Identities = 25/73 (34%), Positives = 42/73 (57%) Frame = +2 Query: 104 IYGIDAEKGHKVCMVNL*NELVS*ETVENLVSSIPFEPYLVVWGAFL*ASGLHLSLEFGL 283 ++GI + H CM++L LV+SIPFE VWGA L A+ +H ++E G Sbjct: 616 MFGIKPTQEHYACMIDLLGRSGKLNEAVELVNSIPFEADGFVWGALLGAARIHKNIELGQ 675 Query: 284 FAAEAMYELKRDR 322 AA+ +++L+ ++ Sbjct: 676 KAAKMLFDLEPEK 688 Score = 37.4 bits (85), Expect(2) = 2e-09 Identities = 18/31 (58%), Positives = 21/31 (67%) Frame = +1 Query: 10 NQITLVIVLSASAHGGLVEEDKLHFESIEIM 102 N ITLV VL A H GLV E K +FE +E+M Sbjct: 586 NHITLVSVLCACNHAGLVNEGKQYFEKMEVM 616 >ref|XP_002313273.1| predicted protein [Populus trichocarpa] gi|222849681|gb|EEE87228.1| predicted protein [Populus trichocarpa] Length = 680 Score = 44.7 bits (104), Expect(2) = 9e-09 Identities = 25/70 (35%), Positives = 36/70 (51%) Frame = +2 Query: 104 IYGIDAEKGHKVCMVNL*NELVS*ETVENLVSSIPFEPYLVVWGAFL*ASGLHLSLEFGL 283 + I + H CMV+L E L+ S+P EP VWGA L A +H +E Sbjct: 540 VQNIKPTQMHYACMVDLLGRAGLIEEAVKLIESLPIEPDANVWGALLGACRIHGYIELAH 599 Query: 284 FAAEAMYELK 313 +AAE +++LK Sbjct: 600 WAAEHLFKLK 609 Score = 39.7 bits (91), Expect(2) = 9e-09 Identities = 16/36 (44%), Positives = 27/36 (75%) Frame = +1 Query: 1 LKLNQITLVIVLSASAHGGLVEEDKLHFESIEIMNI 108 ++ + ++ + VLSA +HGGLVEE K +FE +++ NI Sbjct: 508 VEYDSVSYIAVLSACSHGGLVEEGKKYFEHMQVQNI 543 >ref|XP_004172193.1| PREDICTED: pentatricopeptide repeat-containing protein At1g53600, mitochondrial-like, partial [Cucumis sativus] Length = 719 Score = 53.9 bits (128), Expect(2) = 2e-08 Identities = 29/70 (41%), Positives = 41/70 (58%) Frame = +2 Query: 104 IYGIDAEKGHKVCMVNL*NELVS*ETVENLVSSIPFEPYLVVWGAFL*ASGLHLSLEFGL 283 +Y I E H CMV+L + +LVSS+PF+P+ VWGA L AS HL L+ Sbjct: 567 LYDIQPEPDHYACMVDLLCRAGMFDEAVSLVSSMPFDPHQGVWGAVLGASWTHLRLDVAE 626 Query: 284 FAAEAMYELK 313 AA+ ++EL+ Sbjct: 627 LAAQNLFELE 636 Score = 29.6 bits (65), Expect(2) = 2e-08 Identities = 14/26 (53%), Positives = 18/26 (69%) Frame = +1 Query: 10 NQITLVIVLSASAHGGLVEEDKLHFE 87 N IT + VLSA H GLVEE + +F+ Sbjct: 537 NHITFLGVLSACVHVGLVEEGRRYFD 562 >ref|XP_004151307.1| PREDICTED: pentatricopeptide repeat-containing protein At1g53600, mitochondrial-like [Cucumis sativus] Length = 711 Score = 53.9 bits (128), Expect(2) = 2e-08 Identities = 29/70 (41%), Positives = 41/70 (58%) Frame = +2 Query: 104 IYGIDAEKGHKVCMVNL*NELVS*ETVENLVSSIPFEPYLVVWGAFL*ASGLHLSLEFGL 283 +Y I E H CMV+L + +LVSS+PF+P+ VWGA L AS HL L+ Sbjct: 559 LYDIQPEPDHYACMVDLLCRAGMFDEAVSLVSSMPFDPHQGVWGAVLGASWTHLRLDVAE 618 Query: 284 FAAEAMYELK 313 AA+ ++EL+ Sbjct: 619 LAAQNLFELE 628 Score = 29.6 bits (65), Expect(2) = 2e-08 Identities = 14/26 (53%), Positives = 18/26 (69%) Frame = +1 Query: 10 NQITLVIVLSASAHGGLVEEDKLHFE 87 N IT + VLSA H GLVEE + +F+ Sbjct: 529 NHITFLGVLSACVHVGLVEEGRRYFD 554