BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00019074
         (359 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002511977.1| DNA mismatch repair protein MSH2, putative [...   201   4e-50
ref|XP_003549805.1| PREDICTED: DNA mismatch repair protein Msh2-...   200   9e-50
ref|NP_566804.3| DNA mismatch repair protein Msh2 [Arabidopsis t...   197   1e-48
ref|XP_002885262.1| hypothetical protein ARALYDRAFT_479358 [Arab...   195   3e-48
gb|AAD04176.1| mismatch repair protein [Arabidopsis thaliana]         194   5e-48

>ref|XP_002511977.1| DNA mismatch repair protein MSH2, putative [Ricinus communis]
           gi|223549157|gb|EEF50646.1| DNA mismatch repair protein
           MSH2, putative [Ricinus communis]
          Length = 936

 Score =  201 bits (512), Expect = 4e-50
 Identities = 99/119 (83%), Positives = 110/119 (92%)
 Frame = +3

Query: 3   IRKKLTTQFIVLETRKDGVKFTNSKLKKLGDQYQRLLEEYTSCQKELVARVVETAATFSE 182
           IRKKLTTQFIVLETRKDGVKFTN+KLKKLGDQYQ+++EEY +CQKELV RVV+TAATFSE
Sbjct: 524 IRKKLTTQFIVLETRKDGVKFTNTKLKKLGDQYQKIVEEYKNCQKELVNRVVQTAATFSE 583

Query: 183 VFDSLAGILSEVDVLLSFADLAISCPTPYTRPSITHSDEGDIVLNGSRHPCVEAQDGVN 359
           VF SLAG+LS++DVLLSFADLA SCPTPYTRP IT SD G+I+L GSRHPCVEAQD VN
Sbjct: 584 VFKSLAGLLSQLDVLLSFADLATSCPTPYTRPDITPSDVGNIILEGSRHPCVEAQDWVN 642


>ref|XP_003549805.1| PREDICTED: DNA mismatch repair protein Msh2-like [Glycine max]
          Length = 942

 Score =  200 bits (509), Expect = 9e-50
 Identities = 99/119 (83%), Positives = 108/119 (90%)
 Frame = +3

Query: 3   IRKKLTTQFIVLETRKDGVKFTNSKLKKLGDQYQRLLEEYTSCQKELVARVVETAATFSE 182
           IRKKL TQFI+LETRKDGVKFTN+KLKKLGDQYQ++LEEY SCQK+LV RVV+TAATFSE
Sbjct: 529 IRKKLNTQFIILETRKDGVKFTNTKLKKLGDQYQQILEEYKSCQKKLVDRVVQTAATFSE 588

Query: 183 VFDSLAGILSEVDVLLSFADLAISCPTPYTRPSITHSDEGDIVLNGSRHPCVEAQDGVN 359
           VF+SLA I+SE+DVLLSFADLA SCPTPYTRP IT SDEGDI L G RHPCVEAQD VN
Sbjct: 589 VFESLAEIISELDVLLSFADLASSCPTPYTRPDITSSDEGDITLEGCRHPCVEAQDWVN 647


>ref|NP_566804.3| DNA mismatch repair protein Msh2 [Arabidopsis thaliana]
           gi|3914056|sp|O24617.1|MSH2_ARATH RecName: Full=DNA
           mismatch repair protein MSH2; Short=AtMSH2; AltName:
           Full=MutS protein homolog 2 gi|2522362|gb|AAB82649.1|
           MutS homolog 2 [Arabidopsis thaliana]
           gi|2522364|gb|AAB82650.1| MutS homolog 2 [Arabidopsis
           thaliana] gi|2547236|gb|AAB81282.1| DNA mismatch repair
           protein MSH2 [Arabidopsis thaliana]
           gi|11994116|dbj|BAB01119.1| DNA mismatch repair protein
           MSH2 [Arabidopsis thaliana] gi|332642591|gb|AEE76112.1|
           DNA mismatch repair protein Msh2 [Arabidopsis thaliana]
          Length = 937

 Score =  197 bits (500), Expect = 1e-48
 Identities = 97/119 (81%), Positives = 106/119 (89%)
 Frame = +3

Query: 3   IRKKLTTQFIVLETRKDGVKFTNSKLKKLGDQYQRLLEEYTSCQKELVARVVETAATFSE 182
           IRKKLTTQFIVLETRKDGVKFTN+KLKKLGDQYQ ++++Y SCQKELV RVVET  +FSE
Sbjct: 528 IRKKLTTQFIVLETRKDGVKFTNTKLKKLGDQYQSVVDDYRSCQKELVDRVVETVTSFSE 587

Query: 183 VFDSLAGILSEVDVLLSFADLAISCPTPYTRPSITHSDEGDIVLNGSRHPCVEAQDGVN 359
           VF+ LAG+LSE+DVLLSFADLA SCPTPY RP IT SD GDIVL GSRHPCVEAQD VN
Sbjct: 588 VFEDLAGLLSEMDVLLSFADLAASCPTPYCRPEITSSDAGDIVLEGSRHPCVEAQDWVN 646


>ref|XP_002885262.1| hypothetical protein ARALYDRAFT_479358 [Arabidopsis lyrata subsp.
           lyrata] gi|297331102|gb|EFH61521.1| hypothetical protein
           ARALYDRAFT_479358 [Arabidopsis lyrata subsp. lyrata]
          Length = 937

 Score =  195 bits (496), Expect = 3e-48
 Identities = 95/119 (79%), Positives = 106/119 (89%)
 Frame = +3

Query: 3   IRKKLTTQFIVLETRKDGVKFTNSKLKKLGDQYQRLLEEYTSCQKELVARVVETAATFSE 182
           IRKKLTTQFIVLETRKDGVKFTN+KLKKLGDQYQ ++++Y SCQKELV RVV+T  +FSE
Sbjct: 528 IRKKLTTQFIVLETRKDGVKFTNTKLKKLGDQYQSVVDDYKSCQKELVDRVVQTVTSFSE 587

Query: 183 VFDSLAGILSEVDVLLSFADLAISCPTPYTRPSITHSDEGDIVLNGSRHPCVEAQDGVN 359
           VF+ LAG+LSE+DVLLSFADLA SCPTPY RP +T SD GDIVL GSRHPCVEAQD VN
Sbjct: 588 VFEELAGLLSEMDVLLSFADLAASCPTPYCRPEVTSSDAGDIVLEGSRHPCVEAQDWVN 646


>gb|AAD04176.1| mismatch repair protein [Arabidopsis thaliana]
          Length = 937

 Score =  194 bits (494), Expect = 5e-48
 Identities = 96/119 (80%), Positives = 105/119 (88%)
 Frame = +3

Query: 3   IRKKLTTQFIVLETRKDGVKFTNSKLKKLGDQYQRLLEEYTSCQKELVARVVETAATFSE 182
           IRKKLTTQFIVLETRKDGVKFTN+KLKKLGDQYQ ++++Y SCQKELV RVVET  +FSE
Sbjct: 528 IRKKLTTQFIVLETRKDGVKFTNTKLKKLGDQYQSVVDDYRSCQKELVDRVVETVTSFSE 587

Query: 183 VFDSLAGILSEVDVLLSFADLAISCPTPYTRPSITHSDEGDIVLNGSRHPCVEAQDGVN 359
           VF+ LAG+LSE+DVLLSFADLA SCPTPY RP IT  D GDIVL GSRHPCVEAQD VN
Sbjct: 588 VFEDLAGLLSEMDVLLSFADLAASCPTPYCRPEITSLDAGDIVLEGSRHPCVEAQDWVN 646