BLASTX nr result
ID: Coptis21_contig00019016
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00019016
(1829 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002280443.1| PREDICTED: pentatricopeptide repeat-containi... 566 e-159
ref|XP_004161997.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope... 565 e-158
ref|XP_004150483.1| PREDICTED: pentatricopeptide repeat-containi... 565 e-158
ref|XP_002315895.1| predicted protein [Populus trichocarpa] gi|2... 549 e-154
ref|XP_002888819.1| pentatricopeptide repeat-containing protein ... 547 e-153
>ref|XP_002280443.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
mitochondrial [Vitis vinifera]
Length = 531
Score = 566 bits (1458), Expect = e-159
Identities = 292/536 (54%), Positives = 385/536 (71%), Gaps = 13/536 (2%)
Frame = -3
Query: 1815 MALSKLFTRSPKTIQTILKSSASLSHHFHTTSPTHQKDSLSIPKHVSFHN---------K 1663
M L++ SPK ILK+S + FH L KH + ++ +
Sbjct: 1 MGLTRFLKFSPK----ILKTSNPFTISFHLLLADADFVRLESIKHENENSCGFSPFSFCR 56
Query: 1662 TNVFRSMNTQVLVETSSL---EISKDSEKICKILTAHMGDS-SSLDSFGITNVSLPLVVE 1495
+ S+ Q ET+ I++D+ K+CK+L H S SL + +VS LV+E
Sbjct: 57 SIHGGSIRNQACTETTDATNHHIAQDTGKLCKLLCTHSNSSIESLLNGASVDVSPTLVLE 116
Query: 1494 VLKKLSNAGALALTFFRWVEKKEGYKHSNESYNALIEALGKIKQFNSIWDIVEEMKRKGL 1315
VLKKLSN+G +AL+FFRW EK++G+K+S E+YNALIEALGKIKQF IW++V +M+ KGL
Sbjct: 117 VLKKLSNSGVIALSFFRWAEKQKGFKYSTENYNALIEALGKIKQFKMIWNLVNDMRSKGL 176
Query: 1314 VTKETFGLIMRRYARCRKTKEAIETFKKMDKFGMKHELSDYNRLIDTLSKARHVQEAQQV 1135
+T+ETF LI RRYAR RK KEA+ETF+KM+KFG++ LSD+NRL+D L K+RHV+ AQ+V
Sbjct: 177 LTQETFALISRRYARARKVKEAVETFEKMEKFGLQPVLSDFNRLLDALCKSRHVERAQEV 236
Query: 1134 FDEMKKKKRFMPDVKTYSILLEGWGEERNLEMVQDLCKRMKDEGLEPDVVTYGIVINAYC 955
FD+MK +K F PD+K+Y+ILLEGWG+E+NL + ++ + MKDEG EPD VTYGI+INA+C
Sbjct: 237 FDKMKDRK-FRPDIKSYTILLEGWGQEQNLLRLDEVYREMKDEGFEPDAVTYGILINAHC 295
Query: 954 KSKKYDEALEIFRGTILAKNLKPSPHIYCSLIHGLGAEKRLNEAIDFFEQSKISGFVPEL 775
K+++YD A+E+F + A P+PHIYC+LI+GLG+E+RL EA+ FFE+SK SGF PE
Sbjct: 296 KARRYDAAVELFH-KMEANKCMPTPHIYCTLINGLGSERRLTEALQFFERSKASGFTPEA 354
Query: 774 PTYNALVGAYCWSGRFKDACKELEEMKKSGVLPNSRTYEIIIHHLIKNRRTKDAYRVFQE 595
PTYNA+VG+YC S R DA + ++EM+K GV P +RTY+II+HHLIK RRTK+AYRVFQ
Sbjct: 355 PTYNAVVGSYCQSMRMDDAYRIVDEMRKCGVGPQTRTYDIILHHLIKARRTKEAYRVFQG 414
Query: 594 MESKFGCEPSANTYEIIVRMFCSEERVDMALQVWNQMKAKGILPSMHMFSSLINGLSRDN 415
M S+ GCEPS +TYEI+VRMFC+EERVDMAL+VW++MKAKG+LP MHMFS+LIN L +N
Sbjct: 415 MSSEPGCEPSVSTYEIVVRMFCNEERVDMALRVWDEMKAKGVLPGMHMFSTLINSLCYEN 474
Query: 414 KLDEACAYFQEMLDSGIRPPGPLFGNXXXXXXXXXXXXXXLSFGLKLDKIRKTRLV 247
KLDEAC YF EMLD GIRPP +F N L KLDKIR T+++
Sbjct: 475 KLDEACKYFHEMLDMGIRPPAAMFSNLKQTLLDEGKQDMVLILAQKLDKIRTTQVI 530
>ref|XP_004161997.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g71060, mitochondrial-like [Cucumis sativus]
Length = 542
Score = 565 bits (1455), Expect = e-158
Identities = 281/525 (53%), Positives = 388/525 (73%), Gaps = 1/525 (0%)
Frame = -3
Query: 1818 AMALSKLFTRSPKTIQTILKSSASLSHHFHTTSPTHQKDSLSIPKHVSFHNKTNVFRSMN 1639
+++ SK T++ QT + S+ + H P S H H+K ++ S
Sbjct: 27 SVSCSKTITKN----QTSICISSHCNEHSTLLIPNRNYTSHRSTHHRIEHSKQDLKASQK 82
Query: 1638 TQVLVETSSLEISKDSEKICKILTAHMGDS-SSLDSFGITNVSLPLVVEVLKKLSNAGAL 1462
+ V S EI++D+EK CK+++ + SL +S L+VEVLKKLSNAG L
Sbjct: 83 SIV----ESDEIAQDAEKFCKLISKNPNSCIESLLDGAPMELSPALIVEVLKKLSNAGFL 138
Query: 1461 ALTFFRWVEKKEGYKHSNESYNALIEALGKIKQFNSIWDIVEEMKRKGLVTKETFGLIMR 1282
AL+FFRW EK++G+KH+ ESYN LIEALGKIKQFN IW++V +MKRKG++++ETF LI R
Sbjct: 139 ALSFFRWAEKQKGFKHTTESYNLLIEALGKIKQFNVIWNLVSDMKRKGILSRETFALITR 198
Query: 1281 RYARCRKTKEAIETFKKMDKFGMKHELSDYNRLIDTLSKARHVQEAQQVFDEMKKKKRFM 1102
RYAR RK KEA+E+F+KM+KFG + +SD+NRL+DTL K+R+V++AQ+VFD+MK RF
Sbjct: 199 RYARARKVKEAVESFEKMEKFGFQMGVSDFNRLLDTLCKSRNVKKAQEVFDKMKHG-RFK 257
Query: 1101 PDVKTYSILLEGWGEERNLEMVQDLCKRMKDEGLEPDVVTYGIVINAYCKSKKYDEALEI 922
PD+K+Y+ILLEGWG+++NL + ++ + M+DEG EPDVVT+GI+INA+CK++KYDEA+ +
Sbjct: 258 PDIKSYTILLEGWGQDQNLLKLNEVYREMRDEGFEPDVVTFGILINAHCKARKYDEAIRL 317
Query: 921 FRGTILAKNLKPSPHIYCSLIHGLGAEKRLNEAIDFFEQSKISGFVPELPTYNALVGAYC 742
F + AKN+KPSPH++C+LI+GLG+EKRL EA++FFEQ K+SGF PE PTYNA+VGAYC
Sbjct: 318 FH-EMEAKNIKPSPHVFCTLINGLGSEKRLKEALEFFEQLKLSGFAPEAPTYNAVVGAYC 376
Query: 741 WSGRFKDACKELEEMKKSGVLPNSRTYEIIIHHLIKNRRTKDAYRVFQEMESKFGCEPSA 562
WS + A + ++EM+KSGV PNSRTY+II+HHLIK R++K+AY VFQ M + GCEP+
Sbjct: 377 WSMKMAYAYRMVDEMRKSGVGPNSRTYDIILHHLIKGRKSKEAYSVFQRMSREPGCEPTL 436
Query: 561 NTYEIIVRMFCSEERVDMALQVWNQMKAKGILPSMHMFSSLINGLSRDNKLDEACAYFQE 382
+TY+I++RMFC+EERVDMA+Q+W++MKAKG+LP MH+FS+LIN L ++KL++AC YFQE
Sbjct: 437 STYDIMIRMFCNEERVDMAIQIWDEMKAKGVLPGMHLFSTLINSLCHEHKLEDACTYFQE 496
Query: 381 MLDSGIRPPGPLFGNXXXXXXXXXXXXXXLSFGLKLDKIRKTRLV 247
MLD GIRPP +F N L K+ K+RK LV
Sbjct: 497 MLDVGIRPPATMFSNLKQALLDDGRKDTALLMAEKIXKLRKAPLV 541
>ref|XP_004150483.1| PREDICTED: pentatricopeptide repeat-containing protein At1g71060,
mitochondrial-like [Cucumis sativus]
Length = 542
Score = 565 bits (1455), Expect = e-158
Identities = 281/525 (53%), Positives = 388/525 (73%), Gaps = 1/525 (0%)
Frame = -3
Query: 1818 AMALSKLFTRSPKTIQTILKSSASLSHHFHTTSPTHQKDSLSIPKHVSFHNKTNVFRSMN 1639
+++ SK T++ QT + S+ + H P S H H+K ++ S
Sbjct: 27 SVSCSKTITKN----QTSICISSHCNEHSTLLIPNRNYTSHRSTHHRIEHSKQDLKASQK 82
Query: 1638 TQVLVETSSLEISKDSEKICKILTAHMGDS-SSLDSFGITNVSLPLVVEVLKKLSNAGAL 1462
+ V S EI++D+EK CK+++ + SL +S L+VEVLKKLSNAG L
Sbjct: 83 SIV----ESDEIAQDAEKFCKLISKNPNSCIESLLDGAPMELSPALIVEVLKKLSNAGFL 138
Query: 1461 ALTFFRWVEKKEGYKHSNESYNALIEALGKIKQFNSIWDIVEEMKRKGLVTKETFGLIMR 1282
AL+FFRW EK++G+KH+ ESYN LIEALGKIKQFN IW++V +MKRKG++++ETF LI R
Sbjct: 139 ALSFFRWAEKQKGFKHTTESYNLLIEALGKIKQFNVIWNLVSDMKRKGILSRETFALITR 198
Query: 1281 RYARCRKTKEAIETFKKMDKFGMKHELSDYNRLIDTLSKARHVQEAQQVFDEMKKKKRFM 1102
RYAR RK KEA+E+F+KM+KFG + +SD+NRL+DTL K+R+V++AQ+VFD+MK RF
Sbjct: 199 RYARARKVKEAVESFEKMEKFGFQMGVSDFNRLLDTLCKSRNVKKAQEVFDKMKHG-RFK 257
Query: 1101 PDVKTYSILLEGWGEERNLEMVQDLCKRMKDEGLEPDVVTYGIVINAYCKSKKYDEALEI 922
PD+K+Y+ILLEGWG+++NL + ++ + M+DEG EPDVVT+GI+INA+CK++KYDEA+ +
Sbjct: 258 PDIKSYTILLEGWGQDQNLLKLNEVYREMRDEGFEPDVVTFGILINAHCKARKYDEAIRL 317
Query: 921 FRGTILAKNLKPSPHIYCSLIHGLGAEKRLNEAIDFFEQSKISGFVPELPTYNALVGAYC 742
F + AKN+KPSPH++C+LI+GLG+EKRL EA++FFEQ K+SGF PE PTYNA+VGAYC
Sbjct: 318 FH-EMEAKNIKPSPHVFCTLINGLGSEKRLKEALEFFEQLKLSGFAPEAPTYNAVVGAYC 376
Query: 741 WSGRFKDACKELEEMKKSGVLPNSRTYEIIIHHLIKNRRTKDAYRVFQEMESKFGCEPSA 562
WS + A + ++EM+KSGV PNSRTY+II+HHLIK R++K+AY VFQ M + GCEP+
Sbjct: 377 WSMKMAYAYRMVDEMRKSGVGPNSRTYDIILHHLIKGRKSKEAYSVFQRMSREPGCEPTL 436
Query: 561 NTYEIIVRMFCSEERVDMALQVWNQMKAKGILPSMHMFSSLINGLSRDNKLDEACAYFQE 382
+TY+I++RMFC+EERVDMA+Q+W++MKAKG+LP MH+FS+LIN L ++KL++AC YFQE
Sbjct: 437 STYDIMIRMFCNEERVDMAIQIWDEMKAKGVLPGMHLFSTLINSLCHEHKLEDACTYFQE 496
Query: 381 MLDSGIRPPGPLFGNXXXXXXXXXXXXXXLSFGLKLDKIRKTRLV 247
MLD GIRPP +F N L K+ K+RK LV
Sbjct: 497 MLDVGIRPPATMFSNLKQALLDDGRKDTALLMAEKIKKLRKAPLV 541
>ref|XP_002315895.1| predicted protein [Populus trichocarpa] gi|222864935|gb|EEF02066.1|
predicted protein [Populus trichocarpa]
Length = 424
Score = 549 bits (1415), Expect = e-154
Identities = 270/424 (63%), Positives = 339/424 (79%)
Frame = -3
Query: 1518 VSLPLVVEVLKKLSNAGALALTFFRWVEKKEGYKHSNESYNALIEALGKIKQFNSIWDIV 1339
VS LV E LKKLSNAGALAL+FFRW EK++G+++S ESY+ALIE+LGKIKQFN IW++V
Sbjct: 3 VSPSLVFEALKKLSNAGALALSFFRWAEKQKGFQYSTESYHALIESLGKIKQFNVIWNLV 62
Query: 1338 EEMKRKGLVTKETFGLIMRRYARCRKTKEAIETFKKMDKFGMKHELSDYNRLIDTLSKAR 1159
+MK+KGL+ KETF LI RRYAR RK KEA++ F KM+KFG+K E SD NRL+DTL K+R
Sbjct: 63 TDMKQKGLLNKETFALISRRYARARKVKEAVDAFMKMEKFGLKIESSDVNRLLDTLCKSR 122
Query: 1158 HVQEAQQVFDEMKKKKRFMPDVKTYSILLEGWGEERNLEMVQDLCKRMKDEGLEPDVVTY 979
V+ AQ VFD+M K+ F+ D+K+Y+ILLEGWG+E+NL + ++ MKDEG EPDVVTY
Sbjct: 123 QVERAQLVFDKM-NKRGFVADIKSYTILLEGWGQEKNLSRLMEVYNEMKDEGFEPDVVTY 181
Query: 978 GIVINAYCKSKKYDEALEIFRGTILAKNLKPSPHIYCSLIHGLGAEKRLNEAIDFFEQSK 799
GI+INA+CKS++YD+A+E+F + AKN KPSPHIYC+LI+GLGAEKRL+EA++FFE SK
Sbjct: 182 GILINAHCKSRRYDDAIELFH-EMEAKNCKPSPHIYCTLINGLGAEKRLSEALEFFELSK 240
Query: 798 ISGFVPELPTYNALVGAYCWSGRFKDACKELEEMKKSGVLPNSRTYEIIIHHLIKNRRTK 619
SGFVPE PTYNA+VGAYCWS R D + ++EM+K GV P++RTY+II+HHLI+ +TK
Sbjct: 241 ASGFVPEAPTYNAVVGAYCWSERMDDVQRTIDEMRKGGVGPSARTYDIILHHLIRAGKTK 300
Query: 618 DAYRVFQEMESKFGCEPSANTYEIIVRMFCSEERVDMALQVWNQMKAKGILPSMHMFSSL 439
AY VFQ+M + GC+PS +TYEIIVRMFC+E+RVDMA++VW+QMKAKGILP MHMFS+L
Sbjct: 301 IAYSVFQKMSCE-GCQPSVSTYEIIVRMFCNEDRVDMAIKVWDQMKAKGILPVMHMFSTL 359
Query: 438 INGLSRDNKLDEACAYFQEMLDSGIRPPGPLFGNXXXXXXXXXXXXXXLSFGLKLDKIRK 259
IN L ++KLDEAC YFQEMLD GIRPP LF N + F KLDK+RK
Sbjct: 360 INSLCHESKLDEACMYFQEMLDVGIRPPAQLFSNLKQNLLDEGKKDTVVVFERKLDKLRK 419
Query: 258 TRLV 247
LV
Sbjct: 420 APLV 423
>ref|XP_002888819.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata] gi|297334660|gb|EFH65078.1|
pentatricopeptide repeat-containing protein [Arabidopsis
lyrata subsp. lyrata]
Length = 512
Score = 547 bits (1409), Expect = e-153
Identities = 273/508 (53%), Positives = 370/508 (72%), Gaps = 4/508 (0%)
Frame = -3
Query: 1758 SSASLSHHFHTTSPTHQKDSLSIPKHVSFHNKTN--VFRSMN-TQVLVETSSLEISKDSE 1588
+ +LS + + SLS+ H +N V+ S + + V + S+ ++S+D++
Sbjct: 10 AGVNLSRRVYLRISSSSSSSLSLESIPWIHKASNFTVYGSFHASSVETQVSANDVSQDAD 69
Query: 1587 KICKILTAHMGDS-SSLDSFGITNVSLPLVVEVLKKLSNAGALALTFFRWVEKKEGYKHS 1411
KICKIL+ +L + +S L+ EVLKKLSNAG LAL+ F+W E ++G+KH+
Sbjct: 70 KICKILSKFTDSKVETLLNEASVKLSPALIEEVLKKLSNAGVLALSVFKWAENQKGFKHT 129
Query: 1410 NESYNALIEALGKIKQFNSIWDIVEEMKRKGLVTKETFGLIMRRYARCRKTKEAIETFKK 1231
+YNALIE+LGKIKQF IW++V++MK+K L++K+TF LI RRYAR RK KEAI F K
Sbjct: 130 TSNYNALIESLGKIKQFKLIWNLVDDMKQKKLLSKDTFALISRRYARARKVKEAITAFHK 189
Query: 1230 MDKFGMKHELSDYNRLIDTLSKARHVQEAQQVFDEMKKKKRFMPDVKTYSILLEGWGEER 1051
M+ +G K E SD+NR++D LSK+R+V +AQ+VFD+M KKKRF PD+K+Y+ILLEGWG+E
Sbjct: 190 MEDYGFKMESSDFNRMLDILSKSRNVGDAQKVFDKM-KKKRFEPDIKSYTILLEGWGQEL 248
Query: 1050 NLEMVQDLCKRMKDEGLEPDVVTYGIVINAYCKSKKYDEALEIFRGTILAKNLKPSPHIY 871
NL V ++ MKDEG EPDVV YGI+INAYCK+KKYDEA+ F + +N KPSPHI+
Sbjct: 249 NLLRVNEVYGEMKDEGFEPDVVAYGIIINAYCKAKKYDEAVRFF-NEMEQRNCKPSPHIF 307
Query: 870 CSLIHGLGAEKRLNEAIDFFEQSKISGFVPELPTYNALVGAYCWSGRFKDACKELEEMKK 691
CSLI+GLG+EK+LN+A++FFE+SK SGF E PTYNALVGAYCWS R +DA K ++EM+
Sbjct: 308 CSLINGLGSEKKLNDALEFFERSKSSGFPLEAPTYNALVGAYCWSQRMEDAFKTVDEMRS 367
Query: 690 SGVLPNSRTYEIIIHHLIKNRRTKDAYRVFQEMESKFGCEPSANTYEIIVRMFCSEERVD 511
G+ PN+RTY+II+HHLI+ +RTK+AY V+Q+M CEP+ +TYEI+VRMFC++ER+D
Sbjct: 368 KGIGPNARTYDIILHHLIRMQRTKEAYEVYQKM----SCEPTVSTYEIMVRMFCNKERLD 423
Query: 510 MALQVWNQMKAKGILPSMHMFSSLINGLSRDNKLDEACAYFQEMLDSGIRPPGPLFGNXX 331
MA+++W++MK KG+LP MHMFSSLI L +NKLDEAC YF EMLD GIRPPG LF
Sbjct: 424 MAIKIWDEMKGKGVLPGMHMFSSLITALCHENKLDEACEYFNEMLDVGIRPPGHLFSRLK 483
Query: 330 XXXXXXXXXXXXLSFGLKLDKIRKTRLV 247
+K+D++RKT+LV
Sbjct: 484 QTLLDEGRKDKVADLAVKMDRLRKTQLV 511