BLASTX nr result
ID: Coptis21_contig00018959
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00018959
(1925 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002266931.2| PREDICTED: RNA polymerase II C-terminal doma... 231 4e-58
emb|CBI35661.3| unnamed protein product [Vitis vinifera] 218 6e-54
ref|XP_002297869.1| predicted protein [Populus trichocarpa] gi|2... 195 4e-47
ref|XP_004157633.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymera... 184 6e-44
ref|XP_004140651.1| PREDICTED: RNA polymerase II C-terminal doma... 184 6e-44
>ref|XP_002266931.2| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like
3-like [Vitis vinifera]
Length = 1238
Score = 231 bits (590), Expect = 4e-58
Identities = 193/556 (34%), Positives = 273/556 (49%), Gaps = 28/556 (5%)
Frame = -2
Query: 1606 EAEFEKRICLILEALDTVTVSDAEKCFGEVCSRLRTALDTLQLI-----VSESGLSVVGG 1442
E E +R+ I E L++VTV +AEK F VCSRL+ L +LQ + V ES +
Sbjct: 179 ERELVERVKSIQEDLESVTVIEAEKSFSGVCSRLQNTLGSLQKVFGEKVVGESSVPTKDA 238
Query: 1441 ITDQCFVGFEDVNSVFNSMNPKEKGQNKEVFTSLLAHMKNQVPSLFSAEQMEEVQAVLHS 1262
+ Q +N VF SMN +K NK+VF+ LL+ ++ +FS + ++EV+ ++
Sbjct: 239 LAQQLINAIRALNHVFCSMNSNQKELNKDVFSRLLSCVECGDSPIFSIQHIKEVEVMMSF 298
Query: 1261 LDPPPAISSGVKDMEVEREVPVNNDVKSELGILGEKPVKSVNELGILGQKPGKDLGILGE 1082
LD P A SS +V NDV+ G+ SV E
Sbjct: 299 LDTPAAQSSAEASDKV-------NDVQVTDGMNRNILDSSV------------------E 333
Query: 1081 KPGQMFNSLKVVPLEASSTKLGDQNNTYMGSQYLKQGLTSGIRGRGSFGPLLDLHRDHDV 902
G+ F S K + L++ S + +QNN LK GL+S RGR FGPLLDLH+DHD
Sbjct: 334 SSGRAFASAKKLSLDSISVESYNQNNP----DALKPGLSSS-RGRFIFGPLLDLHKDHDE 388
Query: 901 DSLPSPTREAPPPLHFRKQQVDGDRSIKAESKPKVANKKSEDASVHFYETDALKAVSTYQ 722
DSLPSPT +AP K ++ KVA++ ++D+ +H YETDALKAVSTYQ
Sbjct: 389 DSLPSPTGKAPQCFPVNKSEL---------VTAKVAHE-TQDSIMHPYETDALKAVSTYQ 438
Query: 721 QKFGRNSFLLSNRLPSPTPXXXXXXXXXXXXXXXXXXXXXXNARAVNPLMPPQAVVSVTE 542
QKFG SFL ++LPSPTP N +VS
Sbjct: 439 QKFGLTSFLPIDKLPSPTPSEESGDTYGDISGEVSSSSTISAPITANAPALGHPIVSSAP 498
Query: 541 HMDKSGGQGVMPVKTMGQIASRP--NSHGRASSKSRDPRLRLANPDGGTLDPNAHPL--L 374
MD S QG + ++S P +S AS+KSRDPRLRLA+ D G+LD N PL +
Sbjct: 499 QMDSSIVQGPTVGRNTSLVSSGPHLDSSVVASAKSRDPRLRLASSDAGSLDLNERPLPAV 558
Query: 373 KDTPKNEHVAGVLNSRKNKNDGDIIGDGRTVKKQRNGL---------------GNWEVSR 239
++PK + + +++SRK K+ + + DG K+QRNGL G W
Sbjct: 559 SNSPKVDPLGEIVSSRKQKSAEEPLLDGPVTKRQRNGLTSPATVRDAQTVVASGGW---L 615
Query: 238 ENCSSVGTPVIDRIQSTESRG-DPRKGDPRKSVSGGIFSGQRQGSTTGIFNP--VTGGPQ 68
E+ ++V +++R Q E+ G DP+K + + +V+G G P G +
Sbjct: 616 EDSNTVIPQMMNRNQLIENTGTDPKKLESKVTVTG-----------IGCDKPYVTVNGNE 664
Query: 67 QLPVTG-STPQSLPSI 23
LPV ST SL S+
Sbjct: 665 HLPVVATSTTASLQSL 680
>emb|CBI35661.3| unnamed protein product [Vitis vinifera]
Length = 1184
Score = 218 bits (554), Expect = 6e-54
Identities = 180/539 (33%), Positives = 240/539 (44%), Gaps = 7/539 (1%)
Frame = -2
Query: 1855 SNYGSGLYNFAWAQAVQNKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1676
S Y LYN AWAQAVQNKP
Sbjct: 110 SGYTPRLYNLAWAQAVQNKPLNDIFVIIDDSGDEMDVKMDDVSEKEEGELEEGEIDLDSE 169
Query: 1675 XXXXXXXKCLSVKEEENLSPITDEAEFEKRICLILEALDTVTVSDAEKCFGEVCSRLRTA 1496
L V E E E E +R+ I E L++VTV +AEK F VCSRL+
Sbjct: 170 PDVKDEGGVLDVNEPEI---DLKERELVERVKSIQEDLESVTVIEAEKSFSGVCSRLQNT 226
Query: 1495 LDTLQLI-----VSESGLSVVGGITDQCFVGFEDVNSVFNSMNPKEKGQNKEVFTSLLAH 1331
L +LQ + V ES + + Q +N VF SMN +K NK+VF+ LL+
Sbjct: 227 LGSLQKVFGEKVVGESSVPTKDALAQQLINAIRALNHVFCSMNSNQKELNKDVFSRLLSC 286
Query: 1330 MKNQVPSLFSAEQMEEVQAVLHSLDPPPAISSGVKDMEVEREVPVNNDVKSELGILGEKP 1151
++ +FS + ++EV+ ++ LD P A SS +V NDV+ G+
Sbjct: 287 VECGDSPIFSIQHIKEVEVMMSFLDTPAAQSSAEASDKV-------NDVQVTDGMNRNIL 339
Query: 1150 VKSVNELGILGQKPGKDLGILGEKPGQMFNSLKVVPLEASSTKLGDQNNTYMGSQYLKQG 971
SV E G+ F S K
Sbjct: 340 DSSV------------------ESSGRAFASAKK-------------------------- 355
Query: 970 LTSGIRGRGSFGPLLDLHRDHDVDSLPSPTREAPPPLHFRKQQVDGDRSIKAESKPKVAN 791
RGR FGPLLDLH+DHD DSLPSPT +AP K ++ KVA+
Sbjct: 356 ----FRGRFIFGPLLDLHKDHDEDSLPSPTGKAPQCFPVNKSEL---------VTAKVAH 402
Query: 790 KKSEDASVHFYETDALKAVSTYQQKFGRNSFLLSNRLPSPTPXXXXXXXXXXXXXXXXXX 611
+ ++D+ +H YETDALKAVSTYQQKFG SFL ++LPSPTP
Sbjct: 403 E-TQDSIMHPYETDALKAVSTYQQKFGLTSFLPIDKLPSPTPSEESGDTYGDISGEVSSS 461
Query: 610 XXXXNARAVNPLMPPQAVVSVTEHMDKSGGQGVMPVKTMGQIASRPNSHGRASSKSRDPR 431
N +VS MD QG++ + G + SR NS RAS+KSRDPR
Sbjct: 462 STISAPITANAPALGHPIVSSAPQMDIV--QGLVVPRNTGAVNSRFNSILRASAKSRDPR 519
Query: 430 LRLANPDGGTLDPNAHPL--LKDTPKNEHVAGVLNSRKNKNDGDIIGDGRTVKKQRNGL 260
LRLA+ D G+LD N PL + ++PK + + +++SRK K+ + + DG K+QRNGL
Sbjct: 520 LRLASSDAGSLDLNERPLPAVSNSPKVDPLGEIVSSRKQKSAEEPLLDGPVTKRQRNGL 578
>ref|XP_002297869.1| predicted protein [Populus trichocarpa] gi|222845127|gb|EEE82674.1|
predicted protein [Populus trichocarpa]
Length = 1117
Score = 195 bits (495), Expect = 4e-47
Identities = 182/621 (29%), Positives = 259/621 (41%), Gaps = 14/621 (2%)
Frame = -2
Query: 1843 SGLYNFAWAQAVQNKPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 1664
SGLYN AWA+AVQNKP
Sbjct: 2 SGLYNLAWARAVQNKPLNELTVVIDDSGDEMDVVKVIDIEKEEGELEEGEIDLDSEPVVV 61
Query: 1663 XXXKCLSVKEEENLSPITDEAEFEKRICLILEALDTVTVSDAEKCFGEVCSRLRTALDTL 1484
+SV + E R+ I + L++V+V + EK F VC +L L++L
Sbjct: 62 QSEGMVSV-------------DVENRVKSIRKDLESVSVIETEKSFEAVCLKLHKVLESL 108
Query: 1483 QLIV--SESGLSVVGGITDQCFVGFEDVNSVFNSMNPKEKGQNKEVFTSLLAHMKNQVPS 1310
+ +V +++ G+ F+ VNSVF SMN K K QNK VF+ + + + P
Sbjct: 109 KELVGGNDNSFPSKDGLVQLLFMAIRVVNSVFCSMNKKLKEQNKGVFSRFFSLLNSHYPP 168
Query: 1309 LFSAEQMEEVQAVLHSLDPPPAISSGVKDMEVEREVPVNNDVKSELGILGEKPVKSVNEL 1130
FS Q +EV H ND
Sbjct: 169 FFSPGQNKEVLNENH------------------------NDS------------------ 186
Query: 1129 GILGQKPGKDLGILGEKPGQMFNSLKVVPLEASSTKLGDQNNTYMGSQYLKQGLTSGIRG 950
L + G DL + EK L A+ T + QN + K +
Sbjct: 187 --LAKTAGYDLTTMSEK------------LPAAETFV--QNKPNKSIEAPKPPGVPSFKS 230
Query: 949 RGSFGPLLDLHRDHDVDSLPSPTREAPPPLHFRKQQVDGDRSIKAESKPKVANKKSEDAS 770
RG PLLDL + HD DSLPSPT+E P ++ GD + + +E+
Sbjct: 231 RGVLLPLLDLKKYHDEDSLPSPTQETTP-FPVQRLLAIGDGMVSSGLPVPKVTPVAEEPR 289
Query: 769 VHFYETDALKAVSTYQQKFGRNSFLLSNRLPSPTPXXXXXXXXXXXXXXXXXXXXXXNAR 590
+H YETDALKAVS+YQQKF RNSF +N LPSPTP N R
Sbjct: 290 MHPYETDALKAVSSYQQKFNRNSFF-TNELPSPTPSEESGNGDGDTAGEVSSSSTVVNYR 348
Query: 589 AVNPLMP--------PQAVVSVTEHMDKSGGQGVMPVKTMGQIASRPNSHGRASSKSRDP 434
VNP + P + H D S +GV+P + ++S P+S +AS+KSRDP
Sbjct: 349 TVNPPVSDQKNAPPSPPPLPPPPPHPDSSNIRGVVPTRNSAPVSSGPSSTIKASAKSRDP 408
Query: 433 RLRLANPDGGTLDPN--AHPLLKDTPKNEHVAGVLNSRKNKNDGDIIGDGRTVKKQRNGL 260
RLR N D LD N A P++ + P+ E ++ S+K+K + D++ D ++K+QRN
Sbjct: 409 RLRYVNIDACALDHNQRALPMVNNLPRVEPAGAIVGSKKHKIEEDVL-DDPSLKRQRNSF 467
Query: 259 GNWEVSRENCSSVGTP--VIDRIQSTESRGDPRKGDPRKSVSGGIFSGQRQGSTTGIFNP 86
N+ R+ S GT + D + + + +V+G SG Q GI N
Sbjct: 468 DNYGAVRDIESMTGTGGWLEDTDMAEPQTVNKNQWAENSNVNG---SGNAQSPFMGISN- 523
Query: 85 VTGGPQQLPVTGSTPQSLPSI 23
+TG +Q VT + SLP +
Sbjct: 524 ITGS-EQAQVTSTATTSLPDL 543
>ref|XP_004157633.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymerase II C-terminal domain
phosphatase-like 3-like [Cucumis sativus]
Length = 1249
Score = 184 bits (468), Expect = 6e-44
Identities = 150/482 (31%), Positives = 221/482 (45%), Gaps = 22/482 (4%)
Frame = -2
Query: 1600 EFEKRICLILEALDTVTVSDAEKCFGEVCSRLRTALDTLQLIVSESGLSVVGGITDQCFV 1421
E ++ + I + LD VT+ A+K F EVCS++ ++++T ++ + + + +
Sbjct: 193 ELDELLKFIQKTLDGVTIDAAQKSFQEVCSQIHSSIETFVELLQGKVVPRKDALIQRLYA 252
Query: 1420 GFEDVNSVFNSMNPKEKGQNKEVFTSLLAHMKNQVPSLFSAEQMEEVQAVL---HSLDPP 1250
+NSVF SMN EK ++KE + LL+++KN P LFS EQ++ V+ + SLD
Sbjct: 253 ALRLINSVFCSMNLSEKEEHKEHLSRLLSYVKNCDPPLFSPEQIKSVEVKMPSTDSLDHL 312
Query: 1249 PAISSGVKDMEVEREVPVNNDVKSELGILGEKPVKSVNELGILGQKPGKDLGILGEKPGQ 1070
P++ K++E+ + N VK D+
Sbjct: 313 PSMRGSAKEVEIH----IPNGVK--------------------------DMDFYSAYTST 342
Query: 1069 MFNSLKVVPLEASSTKLG--DQNNTYMGSQYLKQGLTSGIRGRGSFGPLLDLHRDHDVDS 896
L + S G +NN + S+ L+ G++S I+GRG PLLDLH+DHD DS
Sbjct: 343 SSQLTPSNKLASDSIPFGVKGKNNLNILSEGLQSGVSS-IKGRGPLLPLLDLHKDHDADS 401
Query: 895 LPSPTREAPPPLHFRKQ---------QVDGDRSIKAESKPKVANKKSEDASVHFYETDAL 743
LPSPTREAP +K VDG RS H YETDAL
Sbjct: 402 LPSPTREAPTIFSVQKSGNAPTKMAFPVDGSRS-------------------HPYETDAL 442
Query: 742 KAVSTYQQKFGRNSFLLSNRLPSPTPXXXXXXXXXXXXXXXXXXXXXXNARAVNPLMPPQ 563
KAVSTYQQKFGR+SF +++RLPSPTP ++ N P Q
Sbjct: 443 KAVSTYQQKFGRSSFSMADRLPSPTPSEEHDGGGDIGGEVSSSSIIRSL-KSSNVSKPGQ 501
Query: 562 AVVSVTE-------HMDKSGGQGVMPVKTMGQIASRPNSHGRASSKSRDPRLRLANPDGG 404
S + +MD S + ++ + +S N + +KSRDPRLR+ N D
Sbjct: 502 KSNSASNVSTGLFPNMDSSSTRVLISPLNVAPPSSVSNPTVKPLAKSRDPRLRIVNSDAS 561
Query: 403 TLDPNAHPLLK-DTPKNEHVAGVLNSRKNKNDGDIIGDGRTVKKQRNGLGNWEVSRENCS 227
+D N + + A L+ RK K DG+ DG VK+ R G N V+ +
Sbjct: 562 GMDLNPRTMASVQSSSILESAATLHLRKQKMDGEPNTDGPEVKRLRIGSQNLAVAASDVR 621
Query: 226 SV 221
+V
Sbjct: 622 AV 623
>ref|XP_004140651.1| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like
3-like [Cucumis sativus]
Length = 1249
Score = 184 bits (468), Expect = 6e-44
Identities = 150/482 (31%), Positives = 221/482 (45%), Gaps = 22/482 (4%)
Frame = -2
Query: 1600 EFEKRICLILEALDTVTVSDAEKCFGEVCSRLRTALDTLQLIVSESGLSVVGGITDQCFV 1421
E ++ + I + LD VT+ A+K F EVCS++ ++++T ++ + + + +
Sbjct: 193 ELDELLKFIQKTLDGVTIDAAQKSFQEVCSQIHSSIETFVELLQGKVVPRKDALIQRLYA 252
Query: 1420 GFEDVNSVFNSMNPKEKGQNKEVFTSLLAHMKNQVPSLFSAEQMEEVQAVL---HSLDPP 1250
+NSVF SMN EK ++KE + LL+++KN P LFS EQ++ V+ + SLD
Sbjct: 253 ALRLINSVFCSMNLSEKEEHKEHLSRLLSYVKNCDPPLFSPEQIKSVEVKMPSTDSLDHL 312
Query: 1249 PAISSGVKDMEVEREVPVNNDVKSELGILGEKPVKSVNELGILGQKPGKDLGILGEKPGQ 1070
P++ K++E+ + N VK D+
Sbjct: 313 PSMRGSAKEVEIH----IPNGVK--------------------------DMDFYSAYTST 342
Query: 1069 MFNSLKVVPLEASSTKLG--DQNNTYMGSQYLKQGLTSGIRGRGSFGPLLDLHRDHDVDS 896
L + S G +NN + S+ L+ G++S I+GRG PLLDLH+DHD DS
Sbjct: 343 SSQLTPSNKLASDSIPFGVKGKNNLNILSEGLQSGVSS-IKGRGPLLPLLDLHKDHDADS 401
Query: 895 LPSPTREAPPPLHFRKQ---------QVDGDRSIKAESKPKVANKKSEDASVHFYETDAL 743
LPSPTREAP +K VDG RS H YETDAL
Sbjct: 402 LPSPTREAPTIFSVQKSGNAPTKMAFPVDGSRS-------------------HPYETDAL 442
Query: 742 KAVSTYQQKFGRNSFLLSNRLPSPTPXXXXXXXXXXXXXXXXXXXXXXNARAVNPLMPPQ 563
KAVSTYQQKFGR+SF +++RLPSPTP ++ N P Q
Sbjct: 443 KAVSTYQQKFGRSSFSMADRLPSPTPSEEHDGGGDIGGEVSSSSIIRSL-KSSNVSKPGQ 501
Query: 562 AVVSVTE-------HMDKSGGQGVMPVKTMGQIASRPNSHGRASSKSRDPRLRLANPDGG 404
S + +MD S + ++ + +S N + +KSRDPRLR+ N D
Sbjct: 502 KSNSASNVSTGLFPNMDSSSTRVLISPLNVAPPSSVSNPTVKPLAKSRDPRLRIVNSDAS 561
Query: 403 TLDPNAHPLLK-DTPKNEHVAGVLNSRKNKNDGDIIGDGRTVKKQRNGLGNWEVSRENCS 227
+D N + + A L+ RK K DG+ DG VK+ R G N V+ +
Sbjct: 562 GMDLNPRTMASVQSSSILESAATLHLRKQKMDGEPNTDGPEVKRLRIGSQNLAVAASDVR 621
Query: 226 SV 221
+V
Sbjct: 622 AV 623