BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00018906
         (1365 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002268821.1| PREDICTED: pentatricopeptide repeat-containi...   643   0.0  
ref|XP_002324000.1| predicted protein [Populus trichocarpa] gi|2...   642   0.0  
ref|XP_002526948.1| pentatricopeptide repeat-containing protein,...   633   e-179
ref|XP_003548551.1| PREDICTED: pentatricopeptide repeat-containi...   605   e-171
ref|XP_002873660.1| pentatricopeptide repeat-containing protein ...   572   e-161

>ref|XP_002268821.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46610
            [Vitis vinifera]
          Length = 763

 Score =  643 bits (1658), Expect = 0.0
 Identities = 313/412 (75%), Positives = 355/412 (86%)
 Frame = -3

Query: 1363 EIGKDDDEDWENEFVKLEKFTIRICYQVMRRWLVKGDHSSTKVLQLLSEMDKAGLNPGRA 1184
            EIGKD DEDWENEFVKL+ FTIRICYQVMRRWLVK  + S  +L+LL++MD AGL PGRA
Sbjct: 349  EIGKDADEDWENEFVKLKNFTIRICYQVMRRWLVKEGNQSPILLKLLADMDNAGLQPGRA 408

Query: 1183 EYERLVWACTLEGHHIVAKDLYKRIRERESEISLSVCNHVIWLMGKAKKWWAALEIYEDL 1004
            EYERLVWACT E H++VAK+LY RIRER +EISLSVCNH+IWLMGKAKKWWAALEIYEDL
Sbjct: 409  EYERLVWACTREEHYVVAKELYTRIRERHTEISLSVCNHIIWLMGKAKKWWAALEIYEDL 468

Query: 1003 LDKGPKPNNLSYELVVSHFNVLLTAASRRGIWRWGVRLLNKMEEKGLKPGSREWNAVLVA 824
            LDKGPKPNNLSYELVVSHFN+LLTAA ++GIWRWGVRLLNKME+KGLKPGSREWNAVLVA
Sbjct: 469  LDKGPKPNNLSYELVVSHFNILLTAARKKGIWRWGVRLLNKMEDKGLKPGSREWNAVLVA 528

Query: 823  CSKASETSAAVQIFSRMVEQGEKPTIISYGALLSALEKGKLYDEALRVWEHMIKVGVKPN 644
            CSKA+ETSAAV+IF RMVEQGEKPTIISYGALLSALEKGKLYDEA RVWEHM+K+GV+PN
Sbjct: 529  CSKAAETSAAVEIFRRMVEQGEKPTIISYGALLSALEKGKLYDEASRVWEHMVKMGVEPN 588

Query: 643  LYAYTILASIYVGQGKFEMVESVIIEMVDSGVEPTVVTYNAIISGCAHNGMGTSAFEWFD 464
            LYAYTI+ASI VGQGK + V+S++ EM   G++ TVVTYNAIISGCA NG+ ++AFEWF 
Sbjct: 589  LYAYTIMASICVGQGKLQRVDSILREMETLGIDATVVTYNAIISGCARNGLSSAAFEWFH 648

Query: 463  RLKGKNISPNEITYEMLILALGRDSKPILAYEMYLRAHNEGLRLSSKAYDAVVYSAKAFG 284
            R+K   I PNEITYEMLI AL +D KP LA+E+Y RA NEGL LS+KAYDAVV S++   
Sbjct: 649  RMKVGKIQPNEITYEMLIEALAKDGKPRLAFELYSRAQNEGLNLSTKAYDAVVLSSQVHS 708

Query: 283  ATIDVDTLGPRPLEXXXXXXXXKNLSEFCNLADLPRRSKPFDKVELYSQDTK 128
            ATIDV  LGPRP E        K LS FCNLAD+PRR+KPFD+ E+YSQ T+
Sbjct: 709  ATIDVSLLGPRPPEKKKKLLARKTLSAFCNLADVPRRAKPFDRKEIYSQQTE 760


>ref|XP_002324000.1| predicted protein [Populus trichocarpa] gi|222867002|gb|EEF04133.1|
            predicted protein [Populus trichocarpa]
          Length = 709

 Score =  642 bits (1655), Expect = 0.0
 Identities = 305/412 (74%), Positives = 362/412 (87%)
 Frame = -3

Query: 1363 EIGKDDDEDWENEFVKLEKFTIRICYQVMRRWLVKGDHSSTKVLQLLSEMDKAGLNPGRA 1184
            EIGKD DEDWE E+VKLE FTIR+CYQVMRRWLV+ ++ +T VL+LL++MDKA L PGR+
Sbjct: 297  EIGKDADEDWEREYVKLENFTIRVCYQVMRRWLVRLENLNTNVLKLLTDMDKAELQPGRS 356

Query: 1183 EYERLVWACTLEGHHIVAKDLYKRIRERESEISLSVCNHVIWLMGKAKKWWAALEIYEDL 1004
            +YERLVWACT E H++VAK+LY RIRER S+ISLSVCNHVIWLMGKAKKWWAALE+YEDL
Sbjct: 357  DYERLVWACTREEHYVVAKELYIRIRERCSDISLSVCNHVIWLMGKAKKWWAALEVYEDL 416

Query: 1003 LDKGPKPNNLSYELVVSHFNVLLTAASRRGIWRWGVRLLNKMEEKGLKPGSREWNAVLVA 824
            LDKGPKPNNLSYEL+VS+FNVLLTAA +RGIWRWGVRLLNKMEEKGLKPGS+EWNAVLVA
Sbjct: 417  LDKGPKPNNLSYELIVSYFNVLLTAAKKRGIWRWGVRLLNKMEEKGLKPGSKEWNAVLVA 476

Query: 823  CSKASETSAAVQIFSRMVEQGEKPTIISYGALLSALEKGKLYDEALRVWEHMIKVGVKPN 644
            CSKASET+AAVQIF RMVEQGEKPT+ISYGALLSALEKG+LYDEA+RVWEHM+KVGVKPN
Sbjct: 477  CSKASETAAAVQIFRRMVEQGEKPTVISYGALLSALEKGRLYDEAVRVWEHMLKVGVKPN 536

Query: 643  LYAYTILASIYVGQGKFEMVESVIIEMVDSGVEPTVVTYNAIISGCAHNGMGTSAFEWFD 464
            +YAYTI+AS++  QG F +V+++I EMV +G+EPTVVTYNAIISGCA N + ++A+EWF 
Sbjct: 537  VYAYTIMASVFTRQGNFRLVDAIINEMVSTGIEPTVVTYNAIISGCARNNLSSAAYEWFH 596

Query: 463  RLKGKNISPNEITYEMLILALGRDSKPILAYEMYLRAHNEGLRLSSKAYDAVVYSAKAFG 284
            R+K +NISPNEITY+MLI AL +  KP LAYE+YLRA NE L+LS KAYDAV++S++A+G
Sbjct: 597  RMKVQNISPNEITYDMLIEALAKSGKPRLAYELYLRAQNEDLQLSPKAYDAVMHSSEAYG 656

Query: 283  ATIDVDTLGPRPLEXXXXXXXXKNLSEFCNLADLPRRSKPFDKVELYSQDTK 128
            ATID   LGPRP +        K L+EFCNLAD+PRRSKPF+K E+Y+   +
Sbjct: 657  ATIDTSVLGPRPPDKKKKVQIRKTLTEFCNLADVPRRSKPFNKKEIYASQAE 708



 Score = 63.5 bits (153), Expect = 1e-07
 Identities = 33/102 (32%), Positives = 56/102 (54%)
 Frame = -3

Query: 754 PTIISYGALLSALEKGKLYDEALRVWEHMIKVGVKPNLYAYTILASIYVGQGKFEMVESV 575
           P +  Y +LLSA+++ + Y+E  ++ E M + GV PN+  Y IL  IYV QG+ +    V
Sbjct: 191 PNLFIYNSLLSAVKQSEQYEETEKILERMTQEGVAPNVVTYNILMVIYVKQGQAKKALDV 250

Query: 574 IIEMVDSGVEPTVVTYNAIISGCAHNGMGTSAFEWFDRLKGK 449
           + EM  +G  P+  +Y++ +        G  A ++F  +K K
Sbjct: 251 LEEMRRNGFTPSAASYSSALLAYRKMEDGDGALKFFVEIKDK 292


>ref|XP_002526948.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223533700|gb|EEF35435.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 671

 Score =  633 bits (1633), Expect = e-179
 Identities = 299/407 (73%), Positives = 356/407 (87%)
 Frame = -3

Query: 1363 EIGKDDDEDWENEFVKLEKFTIRICYQVMRRWLVKGDHSSTKVLQLLSEMDKAGLNPGRA 1184
            +IGK+ DE+WENEFVKLE F IRICYQVMRRWLV+ D+ ST VL+LL++MDKAGL P +A
Sbjct: 257  KIGKNSDENWENEFVKLETFIIRICYQVMRRWLVRHDNFSTDVLKLLTDMDKAGLQPSQA 316

Query: 1183 EYERLVWACTLEGHHIVAKDLYKRIRERESEISLSVCNHVIWLMGKAKKWWAALEIYEDL 1004
            EYERLVWACT E H+ V K+LY RIRER S+ISLSVCNH+IWLMGKAKKWWAALEIYEDL
Sbjct: 317  EYERLVWACTREDHYAVGKELYIRIRERHSKISLSVCNHLIWLMGKAKKWWAALEIYEDL 376

Query: 1003 LDKGPKPNNLSYELVVSHFNVLLTAASRRGIWRWGVRLLNKMEEKGLKPGSREWNAVLVA 824
            LDKGP PNN+SYEL+VSHFN+LLTAA +RGIWRWGVRLLNKME+KGLKPGSREWNAVLVA
Sbjct: 377  LDKGPNPNNMSYELIVSHFNILLTAARKRGIWRWGVRLLNKMEDKGLKPGSREWNAVLVA 436

Query: 823  CSKASETSAAVQIFSRMVEQGEKPTIISYGALLSALEKGKLYDEALRVWEHMIKVGVKPN 644
            CSKASET+AAVQIF RM+EQGEKPTI+SYGALLSALEKGKLYDEA+RVWEHM+KV VKPN
Sbjct: 437  CSKASETTAAVQIFRRMIEQGEKPTIVSYGALLSALEKGKLYDEAVRVWEHMLKVDVKPN 496

Query: 643  LYAYTILASIYVGQGKFEMVESVIIEMVDSGVEPTVVTYNAIISGCAHNGMGTSAFEWFD 464
            LYAYTI+AS++ GQGKF  V+++I +MV SG+EPT++TYNAIISGC HN + ++A+EWF 
Sbjct: 497  LYAYTIMASVFAGQGKFTYVDAIIQKMVSSGIEPTIITYNAIISGCTHNNLSSAAYEWFH 556

Query: 463  RLKGKNISPNEITYEMLILALGRDSKPILAYEMYLRAHNEGLRLSSKAYDAVVYSAKAFG 284
            R+K +N+ PN+ITYEMLI AL +D KP LAYE+YLRA  EGL LS+K YDAV+ S++ +G
Sbjct: 557  RMKVQNMPPNKITYEMLIEALAKDGKPRLAYELYLRAKYEGLDLSAKVYDAVLRSSQVYG 616

Query: 283  ATIDVDTLGPRPLEXXXXXXXXKNLSEFCNLADLPRRSKPFDKVELY 143
            ATID++ LGPRP +        K L+EFC+LAD+PRRSKPF++ E+Y
Sbjct: 617  ATIDINVLGPRPPDKKKRVKIRKTLTEFCDLADVPRRSKPFERHEIY 663



 Score = 64.7 bits (156), Expect = 5e-08
 Identities = 40/128 (31%), Positives = 66/128 (51%), Gaps = 4/128 (3%)
 Frame = -3

Query: 820 SKASETSAAVQIFSRMVEQGEK--PTIISYGALLSALEKGKLYDEALRVWEHMIKVGVKP 647
           +K     A V+   R  E G    P +  Y +LLSA++K KL++EA ++   M + G+ P
Sbjct: 127 NKMESALALVEWLKRRKEIGSSIGPNLFIYNSLLSAVKKSKLFEEAEKILNDMTQEGIAP 186

Query: 646 NLYAYTILASIYVGQGKFEMVESVIIEMVDSGVEPTVVTYNAIISGCAHNGM--GTSAFE 473
           N+  Y  L  IYV +G+     +++ +M + G  PT  +Y+  +   A+ GM  G  A  
Sbjct: 187 NVVTYNTLMGIYVEKGQATKALNILEQMHEKGFIPTAASYSTAL--LAYRGMEDGHGALA 244

Query: 472 WFDRLKGK 449
           +F  +K K
Sbjct: 245 FFVDIKDK 252


>ref|XP_003548551.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46610-like
            [Glycine max]
          Length = 808

 Score =  605 bits (1561), Expect = e-171
 Identities = 298/415 (71%), Positives = 343/415 (82%), Gaps = 1/415 (0%)
 Frame = -3

Query: 1363 EIGKDDD-EDWENEFVKLEKFTIRICYQVMRRWLVKGDHSSTKVLQLLSEMDKAGLNPGR 1187
            EIGKDDD EDWE E +KLEKFTIR+CYQVMR WLV  D+ S  VL+ L +MD  G+   R
Sbjct: 393  EIGKDDDGEDWEKECLKLEKFTIRVCYQVMRCWLVSRDNLSKNVLKFLVDMDNVGIPLPR 452

Query: 1186 AEYERLVWACTLEGHHIVAKDLYKRIRERESEISLSVCNHVIWLMGKAKKWWAALEIYED 1007
            A+ ERL WACT E H+IV K+LY RIRER  +ISLSVCNH IWLMGKAKKWWAALEIYED
Sbjct: 453  ADLERLAWACTREDHYIVVKELYNRIRERYDKISLSVCNHAIWLMGKAKKWWAALEIYED 512

Query: 1006 LLDKGPKPNNLSYELVVSHFNVLLTAASRRGIWRWGVRLLNKMEEKGLKPGSREWNAVLV 827
            LLDKGPKPNNLSYEL+VSHFN LL+AA R+GIWRWGV+LLNKME+KGLKPG REWNAVLV
Sbjct: 513  LLDKGPKPNNLSYELIVSHFNFLLSAAKRKGIWRWGVKLLNKMEDKGLKPGCREWNAVLV 572

Query: 826  ACSKASETSAAVQIFSRMVEQGEKPTIISYGALLSALEKGKLYDEALRVWEHMIKVGVKP 647
            ACSKASET+AAVQIF RMVE GEKPTIISYGALLSALEKGKLYD+ALRVW HMIKVGV+P
Sbjct: 573  ACSKASETTAAVQIFKRMVENGEKPTIISYGALLSALEKGKLYDDALRVWNHMIKVGVEP 632

Query: 646  NLYAYTILASIYVGQGKFEMVESVIIEMVDSGVEPTVVTYNAIISGCAHNGMGTSAFEWF 467
            N YAYTI+ASI+  QG F  V+++I EMV  G+E TVVTYNAII+GCAHNGM + A+EWF
Sbjct: 633  NAYAYTIMASIHTAQGNFNRVDAIIQEMVTLGIEVTVVTYNAIITGCAHNGMSSVAYEWF 692

Query: 466  DRLKGKNISPNEITYEMLILALGRDSKPILAYEMYLRAHNEGLRLSSKAYDAVVYSAKAF 287
             R+K +NISPNEITYEMLI+AL  D KP LAY++Y RA NEGL LSSKAYDAVV S++A 
Sbjct: 693  HRMKVQNISPNEITYEMLIVALANDGKPRLAYQLYTRAKNEGLTLSSKAYDAVVQSSQAN 752

Query: 286  GATIDVDTLGPRPLEXXXXXXXXKNLSEFCNLADLPRRSKPFDKVELYSQDTKES 122
             ATI++  LGPRP++        K L+EF NLA +P+RS+PFD+ E+Y   T+ES
Sbjct: 753  NATIELGLLGPRPVDKKKKVQIRKTLNEFYNLAGVPKRSQPFDRNEIYHSQTEES 807


>ref|XP_002873660.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
            subsp. lyrata] gi|297319497|gb|EFH49919.1|
            pentatricopeptide repeat-containing protein [Arabidopsis
            lyrata subsp. lyrata]
          Length = 674

 Score =  572 bits (1475), Expect = e-161
 Identities = 271/372 (72%), Positives = 320/372 (86%)
 Frame = -3

Query: 1363 EIGKDDDEDWENEFVKLEKFTIRICYQVMRRWLVKGDHSSTKVLQLLSEMDKAGLNPGRA 1184
            EIG D D DWE EFVKLE F  RICYQVMRRWLVK ++ +T+VL+LL+ MD AG  P R 
Sbjct: 297  EIGNDADYDWEFEFVKLENFIGRICYQVMRRWLVKDENWTTRVLKLLNAMDNAGPKPSRE 356

Query: 1183 EYERLVWACTLEGHHIVAKDLYKRIRERESEISLSVCNHVIWLMGKAKKWWAALEIYEDL 1004
            E+ERL+WACT E H+IV K+LYKRIRER  EISLSVCNH+IWLMGKAKKWWAALEIYEDL
Sbjct: 357  EHERLIWACTREEHYIVGKELYKRIRERFPEISLSVCNHLIWLMGKAKKWWAALEIYEDL 416

Query: 1003 LDKGPKPNNLSYELVVSHFNVLLTAASRRGIWRWGVRLLNKMEEKGLKPGSREWNAVLVA 824
            LD+GP+PNNLSYELVVSHFN+LL+AASRRGIWRWGVRLLNKME+KGLKP SR WNAVLVA
Sbjct: 417  LDEGPEPNNLSYELVVSHFNILLSAASRRGIWRWGVRLLNKMEDKGLKPQSRHWNAVLVA 476

Query: 823  CSKASETSAAVQIFSRMVEQGEKPTIISYGALLSALEKGKLYDEALRVWEHMIKVGVKPN 644
            CSKASET+AA+QIF  MV+ GEKPT+ISYGALLSALEKGKLYDEA RVW HMIKVG++PN
Sbjct: 477  CSKASETTAAIQIFKAMVDNGEKPTVISYGALLSALEKGKLYDEAFRVWNHMIKVGIEPN 536

Query: 643  LYAYTILASIYVGQGKFEMVESVIIEMVDSGVEPTVVTYNAIISGCAHNGMGTSAFEWFD 464
            LYAYT +AS+  GQ KF ++++++ EM   G+EP+VVTYNA+ISGCA NG+   A+EWF 
Sbjct: 537  LYAYTTMASVLTGQQKFNLLDTLLKEMASKGIEPSVVTYNAVISGCARNGLSGVAYEWFH 596

Query: 463  RLKGKNISPNEITYEMLILALGRDSKPILAYEMYLRAHNEGLRLSSKAYDAVVYSAKAFG 284
            R++G+ + PNEITYEMLI AL  D+KP LAYE++L+A N+GL+LSSK YDAVV SA+ +G
Sbjct: 597  RMRGEKVEPNEITYEMLIEALANDAKPRLAYELHLKAQNDGLKLSSKPYDAVVKSAETYG 656

Query: 283  ATIDVDTLGPRP 248
            ATID++ LGPRP
Sbjct: 657  ATIDLNLLGPRP 668