BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00018848
         (441 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002531596.1| pentatricopeptide repeat-containing protein,...    64   1e-08
ref|XP_004133705.1| PREDICTED: pentatricopeptide repeat-containi...    56   3e-06
emb|CBI21840.3| unnamed protein product [Vitis vinifera]               55   8e-06
ref|XP_002262853.2| PREDICTED: pentatricopeptide repeat-containi...    54   1e-05
ref|XP_002273904.1| PREDICTED: pentatricopeptide repeat-containi...    54   1e-05

>ref|XP_002531596.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223528792|gb|EEF30799.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 300

 Score = 64.3 bits (155), Expect = 1e-08
 Identities = 34/67 (50%), Positives = 44/67 (65%), Gaps = 6/67 (8%)
 Frame = -3

Query: 184 TTTLTSNPK------STQYKNLYERIAPFCDQSVSMVPILEQWIEEGKSVSKDKLISLIK 23
           +TT TS+ K            LY RI+P  D  VS+VPIL+QWIEEGKSV+KD+L   IK
Sbjct: 30  STTPTSSQKWFRERGKDNLNQLYRRISPVGDPKVSIVPILDQWIEEGKSVNKDQLQVFIK 89

Query: 22  QLKVCRR 2
           +L+ C+R
Sbjct: 90  ELRYCKR 96


>ref|XP_004133705.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21705,
           mitochondrial-like [Cucumis sativus]
           gi|449478158|ref|XP_004155237.1| PREDICTED:
           pentatricopeptide repeat-containing protein At4g21705,
           mitochondrial-like [Cucumis sativus]
          Length = 492

 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 24/58 (41%), Positives = 38/58 (65%)
 Frame = -3

Query: 175 LTSNPKSTQYKNLYERIAPFCDQSVSMVPILEQWIEEGKSVSKDKLISLIKQLKVCRR 2
           L S  +S   +NLY RI+P  D   ++VP+L QWIEEG+++   +L  +++ L+ CRR
Sbjct: 36  LYSTRRSCDRRNLYARISPLGDPECTVVPVLNQWIEEGRNIKDFELRRIVRDLRTCRR 93


>emb|CBI21840.3| unnamed protein product [Vitis vinifera]
          Length = 446

 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 31/98 (31%), Positives = 50/98 (51%), Gaps = 15/98 (15%)
 Frame = -3

Query: 436 LQRMEPDLLKLKDVTGANNILKN---------------LVATYCSNGCFEKAEGLISKAI 302
           ++ ++  LLKL D+ GA    +                L+  YC  G  EKAE L+S+AI
Sbjct: 261 VEMLKNSLLKLDDMDGAEKTFEEWLSGNKFFDFRVPNLLIRAYCKKGLLEKAEQLVSRAI 320

Query: 301 EEGXXXXPSSMALLIFGYLKDNQIPKAIKAMQNAILAS 188
           E+G      +   L  GY ++NQ+ KA+  ++ A+LA+
Sbjct: 321 EQGEEPIAVTWDALAAGYHENNQMEKAVDTLKKALLAT 358


>ref|XP_002262853.2| PREDICTED: pentatricopeptide repeat-containing protein At2g20710,
           mitochondrial-like [Vitis vinifera]
          Length = 494

 Score = 54.3 bits (129), Expect = 1e-05
 Identities = 30/93 (32%), Positives = 47/93 (50%), Gaps = 15/93 (16%)
 Frame = -3

Query: 427 MEPDLLKLKDVTGANNILKN---------------LVATYCSNGCFEKAEGLISKAIEEG 293
           M   LLK  D+  A  +L+                L+  YC  G  EKAE L++K + +G
Sbjct: 331 MISSLLKFDDIDAAEKVLEEWESRRLSYDFRVPNFLIDAYCRKGLTEKAEALVNKILTKG 390

Query: 292 XXXXPSSMALLIFGYLKDNQIPKAIKAMQNAIL 194
                 +   L  GYL+D+QIPKA++A++ A++
Sbjct: 391 GNPLVDTWFYLANGYLEDSQIPKAVEALKKAVV 423


>ref|XP_002273904.1| PREDICTED: pentatricopeptide repeat-containing protein At2g20710,
           mitochondrial [Vitis vinifera]
          Length = 499

 Score = 54.3 bits (129), Expect = 1e-05
 Identities = 32/95 (33%), Positives = 47/95 (49%), Gaps = 15/95 (15%)
 Frame = -3

Query: 427 MEPDLLKLKDVTGANNILKN---------------LVATYCSNGCFEKAEGLISKAIEEG 293
           M   LLKL D+ GA    +                L+  YC  G  EKAE L+S+AIE+G
Sbjct: 317 MVSSLLKLDDMDGAEKTFEEWLSGNKFFDFRVPNLLIRAYCKKGLLEKAEQLVSRAIEQG 376

Query: 292 XXXXPSSMALLIFGYLKDNQIPKAIKAMQNAILAS 188
                 +   L  GY ++NQ+ KA+  ++ A+LA+
Sbjct: 377 EEPIAVTWDALAAGYHENNQMEKAVDTLKKALLAT 411