BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00018642
         (1900 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002268709.1| PREDICTED: RNA polymerase sigma factor rpoD ...   610   e-172
ref|XP_002513587.1| RNA polymerase sigma factor rpoD, putative [...   582   e-164
ref|XP_002333134.1| predicted protein [Populus trichocarpa] gi|2...   582   e-164
ref|XP_002331841.1| predicted protein [Populus trichocarpa] gi|2...   571   e-160
ref|XP_004149458.1| PREDICTED: RNA polymerase sigma factor sigE,...   568   e-159

>ref|XP_002268709.1| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
            gi|302143685|emb|CBI22546.3| unnamed protein product
            [Vitis vinifera]
          Length = 518

 Score =  610 bits (1574), Expect = e-172
 Identities = 334/504 (66%), Positives = 383/504 (75%), Gaps = 9/504 (1%)
 Frame = -1

Query: 1738 PLGLSSRFSINRSPFKSPVFLAFKTDKTENRSLVTSHETTPL---STKSHRVQKRLXXXX 1568
            P GL+++FS +++P + P+ LAFK DK +N +LVT HE  PL   ++K H+  KRL    
Sbjct: 16   PFGLNAKFSNHQTPLRRPLVLAFKADKAKNIALVTPHEPIPLPIETSKDHK--KRLRRAS 73

Query: 1567 XXXXXXXXXXIDE--PCALDVDYSEAAEKLENIYKLSPAKVISDVEDTXXXXXXXXXXXX 1394
                       DE  PC++++DY+EAA KLENIYKLSPA  +S+ ED             
Sbjct: 74   KPSKRVKAVSTDEVSPCSVELDYNEAAAKLENIYKLSPATDVSEAEDLERVVRRGRQRRK 133

Query: 1393 KE--GNGKPEKELSDIVVKNNKKTAKRLGLDKRIELRR--KEEVVDLTKRKVNDTADVGY 1226
            +    + K EKE+SD VV+ + K  KRL L+KRI L +  +E+ V   ++K +   +   
Sbjct: 134  RVTLADDKAEKEVSDNVVRIHNKKPKRLSLEKRIALSKMKQEKAVASIQKKRDSKNEDEN 193

Query: 1225 ADRLVRGYSASTDLVSLDWRKMKIPPVLPSSEHTLLFKLMQPMKTLLKVKEELHKDLGRE 1046
             D LVR YSASTDLVSLDW+KMKIPPVLP SEH  LFKLMQPMK LL+VK+ L KDLGRE
Sbjct: 194  IDVLVREYSASTDLVSLDWKKMKIPPVLPPSEHAWLFKLMQPMKGLLEVKDNLQKDLGRE 253

Query: 1045 PSDGELAAATNMSVPKVRKQIGVGRAARNKLIKHNLRLVLFVINKYFQEFASGPRFQDLC 866
            P+DGELA A +MS  +VR+ + VG+AARNKLIKHNLRLVLFVINKYFQEFA+GP+FQDLC
Sbjct: 254  PTDGELAEAMSMSAVQVRRHMEVGQAARNKLIKHNLRLVLFVINKYFQEFANGPKFQDLC 313

Query: 865  QAGAKGLITAIDRFEPKRRFRLSTYGLFWIRHAIMRSMTTSSFTRVSFGLESVRVEIQRV 686
            QAG KGLITAIDRFEPKR FRLSTYGLFWIRHAIMRSMT SSFTRVSFGLESVRVEIQR 
Sbjct: 314  QAGVKGLITAIDRFEPKRSFRLSTYGLFWIRHAIMRSMTLSSFTRVSFGLESVRVEIQRA 373

Query: 685  KLELMFKLGRKPTEEEIIEKVGISPERYHEVMRASKSVLSLHARHATTQEEFINGITDVG 506
            KLEL+FKL R PTEEEIIEKVGISPERYHEVMRASKSVLSLHARHATTQEE+INGITDV 
Sbjct: 374  KLELLFKLQRLPTEEEIIEKVGISPERYHEVMRASKSVLSLHARHATTQEEYINGITDVE 433

Query: 505  GVCGTXXXXXXXXXXXXXXXXXXLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMV 326
            GV G                   LKPKESLV+RQRYGLDGKGDRTLGEIAGNL+ISREMV
Sbjct: 434  GVGGDRGRQLALLRLALDDVLDSLKPKESLVMRQRYGLDGKGDRTLGEIAGNLSISREMV 493

Query: 325  RKHEVKALMKLKHPTRVDYLRRYI 254
            RKHEVKALMKLKHP RVDYLR+YI
Sbjct: 494  RKHEVKALMKLKHPARVDYLRQYI 517


>ref|XP_002513587.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
            gi|223547495|gb|EEF48990.1| RNA polymerase sigma factor
            rpoD, putative [Ricinus communis]
          Length = 501

 Score =  582 bits (1501), Expect = e-164
 Identities = 319/499 (63%), Positives = 368/499 (73%), Gaps = 3/499 (0%)
 Frame = -1

Query: 1738 PLGLSSRFSINRSPFKSPVFLAFKTDKTENRSLVTSHETTPLSTKSHRVQKRLXXXXXXX 1559
            PLGLS +FS  RS  K  + +AFK DK  +  LV   E TPL  ++ + +KR        
Sbjct: 14   PLGLSLKFSTYRSTVKRSLVVAFKEDKANDIILVPPRERTPLPIETSKGKKRRGKTNREV 73

Query: 1558 XXXXXXXIDEPCALDVDYSEAAEKLENIYKLSPAKVISDVE-DTXXXXXXXXXXXXKEGN 1382
                         L+VDY+EAA KLENIYKLSPA   SDV+ +              EG+
Sbjct: 74   SSG---------TLEVDYNEAAAKLENIYKLSPATDTSDVDINGLIRKGRQRKRKTGEGD 124

Query: 1381 GKPEKELSDIVVKNNKKTAKRLGLDKRIELRR--KEEVVDLTKRKVNDTADVGYADRLVR 1208
             K E   S  +V+N  K  KRL LDKRI L++  +EEVV   ++K +   D    + LVR
Sbjct: 125  EKAENRTSRTIVRNRAKKTKRLSLDKRIALKKNEEEEVVGPIRKKKDSKDDNEKIEELVR 184

Query: 1207 GYSASTDLVSLDWRKMKIPPVLPSSEHTLLFKLMQPMKTLLKVKEELHKDLGREPSDGEL 1028
             YSAST+LVSLDWRKMKIPPVLPS+EH  LFKLMQPMKTLL VK +L K+LGR+P+DGEL
Sbjct: 185  TYSASTNLVSLDWRKMKIPPVLPSTEHAWLFKLMQPMKTLLPVKADLQKNLGRDPTDGEL 244

Query: 1027 AAATNMSVPKVRKQIGVGRAARNKLIKHNLRLVLFVINKYFQEFASGPRFQDLCQAGAKG 848
            A ATNM+V KVRKQ+ VGRAARNKLIKHNLRLV+FV+NKYFQ+FA+GPRFQDLCQAG KG
Sbjct: 245  AEATNMNVEKVRKQLEVGRAARNKLIKHNLRLVMFVMNKYFQDFANGPRFQDLCQAGVKG 304

Query: 847  LITAIDRFEPKRRFRLSTYGLFWIRHAIMRSMTTSSFTRVSFGLESVRVEIQRVKLELMF 668
            LITAIDRFEP+RRF+LSTY LFWIRHAI+RSMT SSFT+VSFGLESVR EIQ+ KLEL+ 
Sbjct: 305  LITAIDRFEPQRRFQLSTYSLFWIRHAIIRSMTLSSFTKVSFGLESVRTEIQKAKLELLI 364

Query: 667  KLGRKPTEEEIIEKVGISPERYHEVMRASKSVLSLHARHATTQEEFINGITDVGGVCGTX 488
            +L R+PTEEEIIE+VGIS ERYHEV+RA+K  LSLHARHA TQEEFINGITD+ G  G  
Sbjct: 365  ELQRRPTEEEIIERVGISAERYHEVIRAAKPALSLHARHAVTQEEFINGITDIDG--GDN 422

Query: 487  XXXXXXXXXXXXXXXXXLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHEVK 308
                             LKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRK+EVK
Sbjct: 423  RRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKYEVK 482

Query: 307  ALMKLKHPTRVDYLRRYIL 251
            ALMKLKHP RVDYLRRY++
Sbjct: 483  ALMKLKHPARVDYLRRYVV 501


>ref|XP_002333134.1| predicted protein [Populus trichocarpa] gi|222834948|gb|EEE73397.1|
            predicted protein [Populus trichocarpa]
          Length = 512

 Score =  582 bits (1501), Expect = e-164
 Identities = 323/501 (64%), Positives = 363/501 (72%), Gaps = 5/501 (0%)
 Frame = -1

Query: 1738 PLGLSSRFSINRSPFKSPVFLAFKTDKTENRSLVTSHETTPLSTKSHRVQKRLXXXXXXX 1559
            PLGLS++FS   S  K P+ +AFK DK+ N SLV  HE  PL  ++ + +KRL       
Sbjct: 14   PLGLSTKFSTYGSTAKRPLIVAFKADKSNNTSLVAPHEQIPLPVETTKGKKRLGKSKKSS 73

Query: 1558 XXXXXXXID-EPCALDVDYSEAAEKLENIYKLSPAKVISDVEDTXXXXXXXXXXXXK--E 1388
                    +  PC L VDY+EAA KLENIYKLSP    SDVED             K  E
Sbjct: 74   NRLKAVRTEVSPCTLLVDYNEAAAKLENIYKLSPGTDTSDVEDASGVIRRGRQRKRKISE 133

Query: 1387 GNGKPEKELSDIVVKNNKKTAKRLGLDKRIELRRK--EEVVDLTKRKVNDTADVGYADRL 1214
            G  + E     I+V+N  K AKRL L+KRI LR K  E++V    ++ +   +    D L
Sbjct: 134  GGKETEDRTGKIIVRNRAKKAKRLSLEKRISLRIKNEEKLVSSAGKRKDRKNENEKIDDL 193

Query: 1213 VRGYSASTDLVSLDWRKMKIPPVLPSSEHTLLFKLMQPMKTLLKVKEELHKDLGREPSDG 1034
            VR YSASTDLVSLDW+KMKIPPVL SSEH  LFKLMQPMK LL+VKE L ++LG EP+D 
Sbjct: 194  VREYSASTDLVSLDWKKMKIPPVLTSSEHVWLFKLMQPMKALLQVKEHLQENLGGEPTDV 253

Query: 1033 ELAAATNMSVPKVRKQIGVGRAARNKLIKHNLRLVLFVINKYFQEFASGPRFQDLCQAGA 854
            ELA A NM V +VRKQI VGRAARNKLIKHNLRLVLFVI KYFQ+FA+G +FQD CQAG 
Sbjct: 254  ELAKAINMDVLQVRKQIAVGRAARNKLIKHNLRLVLFVIKKYFQDFANGTKFQDFCQAGV 313

Query: 853  KGLITAIDRFEPKRRFRLSTYGLFWIRHAIMRSMTTSSFTRVSFGLESVRVEIQRVKLEL 674
            KGLITAIDRFEPKRRFRLSTYGLFWIRHAI+RSMT SSFTRVSFGLES+R EIQ+ KLEL
Sbjct: 314  KGLITAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTLSSFTRVSFGLESIRSEIQKAKLEL 373

Query: 673  MFKLGRKPTEEEIIEKVGISPERYHEVMRASKSVLSLHARHATTQEEFINGITDVGGVCG 494
             F+L R+P E+EIIEKV ISPERYHEV RASK VLSLH+RH TTQEEFI GI DV G  G
Sbjct: 374  WFQLKRQPMEDEIIEKVRISPERYHEVTRASKPVLSLHSRHKTTQEEFIGGIADVDG--G 431

Query: 493  TXXXXXXXXXXXXXXXXXXLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVRKHE 314
                               LKPKESLV+RQRYGLDGKGDRTLGEIAGNLNISREMVRKHE
Sbjct: 432  DDRRQSALLRLALDDVLDSLKPKESLVVRQRYGLDGKGDRTLGEIAGNLNISREMVRKHE 491

Query: 313  VKALMKLKHPTRVDYLRRYIL 251
            VKALMKLKHPTRVDYLRRY++
Sbjct: 492  VKALMKLKHPTRVDYLRRYVV 512


>ref|XP_002331841.1| predicted protein [Populus trichocarpa] gi|222875079|gb|EEF12210.1|
            predicted protein [Populus trichocarpa]
          Length = 512

 Score =  571 bits (1471), Expect = e-160
 Identities = 317/504 (62%), Positives = 363/504 (72%), Gaps = 8/504 (1%)
 Frame = -1

Query: 1738 PLGLSSRFSINRSPFKSPVFLAFKTDKTENRSLVTSHETTPLSTKSHRVQKRLXXXXXXX 1559
            PLG S++FS  RS  K P+ +AFK DK+   +LV  HE  PL  ++ + +KR        
Sbjct: 14   PLGFSTKFSTCRSTAKRPLIVAFKADKSNETALVAPHEQIPLPIETTKEKKRRGKSKKSS 73

Query: 1558 XXXXXXXID-EPCALDVDYSEAAEKLENIYKLSPAKVISDVEDTXXXXXXXXXXXXKEGN 1382
                    +  PC L VDY+EAA KLENIYKLSP    SDVED             K   
Sbjct: 74   DRLKAVRTEVSPCTLGVDYNEAAAKLENIYKLSPGTDTSDVEDVNGVIRRCRQRKRKTSE 133

Query: 1381 GKPEKE--LSDIVVKNNKKTAKRLGLDKRIELRRKEE---VVDLTKRK--VNDTADVGYA 1223
             + E +   S I+V+N  K AKRL L KRI LR K +   V  + KRK   N+   +   
Sbjct: 134  CEKEDDGRTSKIIVRNQAKKAKRLSLQKRIALRIKSDEKLVTSVGKRKGRKNENEKI--- 190

Query: 1222 DRLVRGYSASTDLVSLDWRKMKIPPVLPSSEHTLLFKLMQPMKTLLKVKEELHKDLGREP 1043
            D LVR YS+STDL SLDW+KMKIPPVL S+EH  LFKLMQPMK  L+VKE L ++ GREP
Sbjct: 191  DELVREYSSSTDLASLDWKKMKIPPVLTSAEHAWLFKLMQPMKASLQVKEHLQENSGREP 250

Query: 1042 SDGELAAATNMSVPKVRKQIGVGRAARNKLIKHNLRLVLFVINKYFQEFASGPRFQDLCQ 863
            ++GELA AT+M V +VRKQI VGRAARNKLIKHNLRLVLFVINKYFQ++A+GPR+QDLCQ
Sbjct: 251  TEGELAEATDMDVLQVRKQIEVGRAARNKLIKHNLRLVLFVINKYFQDYANGPRYQDLCQ 310

Query: 862  AGAKGLITAIDRFEPKRRFRLSTYGLFWIRHAIMRSMTTSSFTRVSFGLESVRVEIQRVK 683
            AG KGL+TAIDRFEPKRRFRLSTYGLFWIRHAI+RSMT SSFTRVSFGLES+R EIQ+ K
Sbjct: 311  AGVKGLMTAIDRFEPKRRFRLSTYGLFWIRHAIIRSMTLSSFTRVSFGLESIRSEIQKAK 370

Query: 682  LELMFKLGRKPTEEEIIEKVGISPERYHEVMRASKSVLSLHARHATTQEEFINGITDVGG 503
            LEL F+L RKPT EEIIEKVGIS ERYHEVMRASK VLSLH+RH TTQEE I+G+ DV G
Sbjct: 371  LELWFQLLRKPTGEEIIEKVGISIERYHEVMRASKPVLSLHSRHKTTQEELISGVADVNG 430

Query: 502  VCGTXXXXXXXXXXXXXXXXXXLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREMVR 323
              G                   LKPKESLV+RQR+GLDGKGDRTLGEIAGNLNISREMVR
Sbjct: 431  --GDDRRQSALLRLALDDVLDSLKPKESLVVRQRFGLDGKGDRTLGEIAGNLNISREMVR 488

Query: 322  KHEVKALMKLKHPTRVDYLRRYIL 251
            KHE KALMKLKHPTRVDYL RY++
Sbjct: 489  KHEAKALMKLKHPTRVDYLCRYVV 512


>ref|XP_004149458.1| PREDICTED: RNA polymerase sigma factor sigE,
            chloroplastic/mitochondrial-like [Cucumis sativus]
          Length = 514

 Score =  568 bits (1464), Expect = e-159
 Identities = 319/506 (63%), Positives = 365/506 (72%), Gaps = 10/506 (1%)
 Frame = -1

Query: 1738 PLGLSSRFSINRSPFKSPVFLAFKTDKTENRSLVTSHETTPLSTKSH-RVQKRLXXXXXX 1562
            P  L  +FS + S  K P  +AFK DK  N +LV+ HE   L  +S+ R +KR       
Sbjct: 14   PFRLGVKFSNHSSTLKRPSIVAFKADKHTNTTLVSPHEQVTLPVESNNRRKKRSGNTSKP 73

Query: 1561 XXXXXXXXIDE--PCALDVDYSEAAEKLENIYKLSPAKVISDVEDTXXXXXXXXXXXXKE 1388
                    IDE  PC+LD+DY+EAA KLENI+KLSP       ED+            ++
Sbjct: 74   LKRVKAVLIDEATPCSLDLDYNEAAAKLENIFKLSPM-----TEDSDKECKDGRSKRGQK 128

Query: 1387 GNGKPEKELSDIVVKNNKKTAKRLGLDKRIELRRKEE---VVDLTKRKVN----DTADVG 1229
             + K      D +V+N  K  KRL LDKRI L+ K+E   V  L K+K      D  D  
Sbjct: 129  RSKKSANRPGDGIVRNQTKRIKRLDLDKRIALKNKKEGKAVALLRKQKDTKNEADEIDDD 188

Query: 1228 YADRLVRGYSASTDLVSLDWRKMKIPPVLPSSEHTLLFKLMQPMKTLLKVKEELHKDLGR 1049
              DRLVR YSASTDLVSLDW+KMKIPPVLPSSEHT LFKL+QPMK L++V+EEL K LGR
Sbjct: 189  EIDRLVRDYSASTDLVSLDWKKMKIPPVLPSSEHTRLFKLVQPMKALVEVQEELQKGLGR 248

Query: 1048 EPSDGELAAATNMSVPKVRKQIGVGRAARNKLIKHNLRLVLFVINKYFQEFASGPRFQDL 869
            EP++GELA ATNM+V +VR+Q+ VGRAARNKLIKHNLRLVLFVINKYF++FASGP+FQDL
Sbjct: 249  EPTEGELANATNMNVIQVRRQLEVGRAARNKLIKHNLRLVLFVINKYFEDFASGPKFQDL 308

Query: 868  CQAGAKGLITAIDRFEPKRRFRLSTYGLFWIRHAIMRSMTTSSFTRVSFGLESVRVEIQR 689
            CQAG KGLITAIDRFEPKR+FRLSTY LFWIRHAI+RSMT SSFTRVSFGL+SVRVEIQR
Sbjct: 309  CQAGVKGLITAIDRFEPKRKFRLSTYALFWIRHAIIRSMTLSSFTRVSFGLDSVRVEIQR 368

Query: 688  VKLELMFKLGRKPTEEEIIEKVGISPERYHEVMRASKSVLSLHARHATTQEEFINGITDV 509
             KLEL+ +L R PTE EI  KVGIS ERY EVMRA+K V SLH+RH+TT EE INGITDV
Sbjct: 369  AKLELLCELHRLPTEGEITAKVGISQERYLEVMRATKPVYSLHSRHSTTSEELINGITDV 428

Query: 508  GGVCGTXXXXXXXXXXXXXXXXXXLKPKESLVIRQRYGLDGKGDRTLGEIAGNLNISREM 329
             G  G                   LKPKESLVIRQRYGLDGKG+RTLGEIAGNLNISREM
Sbjct: 429  EGTGGDNRRQPALLRLALDDVLDSLKPKESLVIRQRYGLDGKGNRTLGEIAGNLNISREM 488

Query: 328  VRKHEVKALMKLKHPTRVDYLRRYIL 251
            VRKHEVKALMKLKHP RVDYLRRY++
Sbjct: 489  VRKHEVKALMKLKHPARVDYLRRYLI 514