BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00018516
         (217 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003520106.1| PREDICTED: pentatricopeptide repeat-containi...   120   1e-25
ref|XP_002274352.1| PREDICTED: pentatricopeptide repeat-containi...   120   1e-25
ref|XP_003614017.1| Pentatricopeptide repeat protein [Medicago t...   117   1e-24
ref|XP_002512113.1| pentatricopeptide repeat-containing protein,...   116   2e-24
emb|CBI27276.3| unnamed protein product [Vitis vinifera]              115   4e-24

>ref|XP_003520106.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Glycine max]
          Length = 518

 Score =  120 bits (301), Expect = 1e-25
 Identities = 54/72 (75%), Positives = 62/72 (86%)
 Frame = -1

Query: 217 LIDMYARCGNLVLATKLFDDMGERDTICWNVMISGLAMHGDGQNALKLFKEMDKAGFKPN 38
           L+DMYA+CGNL LA +LFD M ERD +CWN MISGLAMHGDG +ALK+F EM+K G KP+
Sbjct: 278 LLDMYAKCGNLELAKRLFDSMPERDIVCWNAMISGLAMHGDGASALKMFSEMEKTGIKPD 337

Query: 37  DITFIAVFTACS 2
           DITFIAVFTACS
Sbjct: 338 DITFIAVFTACS 349


>ref|XP_002274352.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 536

 Score =  120 bits (301), Expect = 1e-25
 Identities = 54/72 (75%), Positives = 64/72 (88%)
 Frame = -1

Query: 217 LIDMYARCGNLVLATKLFDDMGERDTICWNVMISGLAMHGDGQNALKLFKEMDKAGFKPN 38
           LIDMYA+CG+L +A KLFD M +RDTICWN MISG+AM+GDG NAL+LF EM+KAG KP+
Sbjct: 278 LIDMYAKCGSLDIAKKLFDGMSQRDTICWNAMISGMAMNGDGDNALRLFSEMEKAGVKPD 337

Query: 37  DITFIAVFTACS 2
           DITFIA+FTACS
Sbjct: 338 DITFIAIFTACS 349


>ref|XP_003614017.1| Pentatricopeptide repeat protein [Medicago truncatula]
           gi|355515352|gb|AES96975.1| Pentatricopeptide repeat
           protein [Medicago truncatula]
          Length = 525

 Score =  117 bits (292), Expect = 1e-24
 Identities = 52/72 (72%), Positives = 61/72 (84%)
 Frame = -1

Query: 217 LIDMYARCGNLVLATKLFDDMGERDTICWNVMISGLAMHGDGQNALKLFKEMDKAGFKPN 38
           L+DMYA+CGNL LA +LFD M  RD +CWN MISG+AMHGDG+ ALKLF +M+K G KP+
Sbjct: 281 LLDMYAKCGNLELAKRLFDSMNMRDVVCWNAMISGMAMHGDGKGALKLFYDMEKVGVKPD 340

Query: 37  DITFIAVFTACS 2
           DITFIAVFTACS
Sbjct: 341 DITFIAVFTACS 352


>ref|XP_002512113.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223549293|gb|EEF50782.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 336

 Score =  116 bits (291), Expect = 2e-24
 Identities = 50/72 (69%), Positives = 64/72 (88%)
 Frame = -1

Query: 217 LIDMYARCGNLVLATKLFDDMGERDTICWNVMISGLAMHGDGQNALKLFKEMDKAGFKPN 38
           LIDMYA+CGN+ LA  LFD+M +RDT+CWNVMISGLAMHGDG+ A+ LF +M++AGFKP+
Sbjct: 230 LIDMYAKCGNVDLAKSLFDEMPQRDTVCWNVMISGLAMHGDGEGAINLFLKMEEAGFKPD 289

Query: 37  DITFIAVFTACS 2
           D+TFIA+ +ACS
Sbjct: 290 DVTFIAILSACS 301


>emb|CBI27276.3| unnamed protein product [Vitis vinifera]
          Length = 248

 Score =  115 bits (288), Expect = 4e-24
 Identities = 52/70 (74%), Positives = 62/70 (88%)
 Frame = -1

Query: 217 LIDMYARCGNLVLATKLFDDMGERDTICWNVMISGLAMHGDGQNALKLFKEMDKAGFKPN 38
           LIDMYA+CG+L +A KLFD M +RDTICWN MISG+AM+GDG NAL+LF EM+KAG KP+
Sbjct: 172 LIDMYAKCGSLDIAKKLFDGMSQRDTICWNAMISGMAMNGDGDNALRLFSEMEKAGVKPD 231

Query: 37  DITFIAVFTA 8
           DITFIA+FTA
Sbjct: 232 DITFIAIFTA 241