BLASTX nr result
ID: Coptis21_contig00017972
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00017972
(757 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002274352.1| PREDICTED: pentatricopeptide repeat-containi... 154 6e-48
ref|XP_004157334.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope... 155 6e-46
ref|XP_004143828.1| PREDICTED: pentatricopeptide repeat-containi... 155 6e-46
ref|XP_003520106.1| PREDICTED: pentatricopeptide repeat-containi... 146 4e-45
ref|XP_003614017.1| Pentatricopeptide repeat protein [Medicago t... 144 4e-43
>ref|XP_002274352.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
[Vitis vinifera]
Length = 536
Score = 154 bits (389), Expect(2) = 6e-48
Identities = 80/151 (52%), Positives = 106/151 (70%), Gaps = 14/151 (9%)
Frame = +1
Query: 205 LLTVYGIQPKSEHYGCIVDFLSQAWLFEEAKGVMQRIARRQ---------KQLLGR---- 345
+ TVY ++PKSEHYGCIVD L +A L +EAK ++ ++ + LL
Sbjct: 364 MCTVYNMEPKSEHYGCIVDLLGRAGLLKEAKELILKMPNSSSPTEQAIAWRALLSACCSH 423
Query: 346 -KTRLAGVAAERLFELESHSGAYVLLSNMYAADGKYDDAKRIRKIMKDRGVEKTPGCSSI 522
+T +A AA+RLF LE HSGAYVLLSN+YAA GK D +RIRK+M++RGV+K PGCSS+
Sbjct: 424 GQTEVAEDAAQRLFHLEHHSGAYVLLSNLYAAAGKQDHVRRIRKMMENRGVDKAPGCSSV 483
Query: 523 DLTG*VHEFIVGEETHPKMEDIYQVLEKMKK 615
+ G VHEFI GEETH +ME++++VLEKM K
Sbjct: 484 KINGVVHEFIAGEETHLQMEEVHRVLEKMNK 514
Score = 63.2 bits (152), Expect(2) = 6e-48
Identities = 29/60 (48%), Positives = 46/60 (76%), Gaps = 1/60 (1%)
Frame = +3
Query: 33 NKIFSGHGLNYF-ESSIKLYNKTDKAGFQPNDITFIAVFTACSYSGMPLEGLQIFNSMTT 209
N + SG +N +++++L+++ +KAG +P+DITFIA+FTACSYSGM E +++ NSM T
Sbjct: 307 NAMISGMAMNGDGDNALRLFSEMEKAGVKPDDITFIAIFTACSYSGMAHEAIRLLNSMCT 366
>ref|XP_004157334.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At2g20540-like [Cucumis sativus]
Length = 532
Score = 155 bits (391), Expect(2) = 6e-46
Identities = 81/149 (54%), Positives = 110/149 (73%), Gaps = 14/149 (9%)
Frame = +1
Query: 211 TVYGIQPKSEHYGCIVDFLSQAWLFEEAKGVMQRIARR----QKQLLGR----------K 348
TV+ I+PKSEHYGC++D LS+ FEEA+GV+QR+ + ++ + R +
Sbjct: 366 TVHKIEPKSEHYGCVIDLLSRVGRFEEAEGVIQRLPKTASPSEEAVAWRAFLSACCKHGQ 425
Query: 349 TRLAGVAAERLFELESHSGAYVLLSNMYAADGKYDDAKRIRKIMKDRGVEKTPGCSSIDL 528
T+ A VAAERLF+LE HSGAYVLLSNMYAA GK++DAKR+R +MK +GVEK PGCSSI +
Sbjct: 426 TQQAEVAAERLFQLERHSGAYVLLSNMYAALGKHEDAKRVRNMMKLKGVEKVPGCSSIKV 485
Query: 529 TG*VHEFIVGEETHPKMEDIYQVLEKMKK 615
G V+EFI GE+TH +++I+ VLE++ K
Sbjct: 486 NGVVNEFIAGEKTHRHIDNIHLVLEELNK 514
Score = 55.8 bits (133), Expect(2) = 6e-46
Identities = 26/47 (55%), Positives = 38/47 (80%)
Frame = +3
Query: 69 ESSIKLYNKTDKAGFQPNDITFIAVFTACSYSGMPLEGLQIFNSMTT 209
E +IKL+ + +KAG +P++ITFIAV+ ACS SGM EG++I+N M+T
Sbjct: 320 EGAIKLFMEMEKAGIKPDNITFIAVWXACSNSGMVDEGIRIWNRMST 366
>ref|XP_004143828.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Cucumis sativus]
Length = 532
Score = 155 bits (391), Expect(2) = 6e-46
Identities = 81/149 (54%), Positives = 110/149 (73%), Gaps = 14/149 (9%)
Frame = +1
Query: 211 TVYGIQPKSEHYGCIVDFLSQAWLFEEAKGVMQRIARR----QKQLLGR----------K 348
TV+ I+PKSEHYGC++D LS+ FEEA+GV+QR+ + ++ + R +
Sbjct: 366 TVHKIEPKSEHYGCVIDLLSRVGRFEEAEGVIQRLPKTASPSEEAVAWRAFLSACCKHGQ 425
Query: 349 TRLAGVAAERLFELESHSGAYVLLSNMYAADGKYDDAKRIRKIMKDRGVEKTPGCSSIDL 528
T+ A VAAERLF+LE HSGAYVLLSNMYAA GK++DAKR+R +MK +GVEK PGCSSI +
Sbjct: 426 TQQAEVAAERLFQLERHSGAYVLLSNMYAALGKHEDAKRVRNMMKLKGVEKVPGCSSIKV 485
Query: 529 TG*VHEFIVGEETHPKMEDIYQVLEKMKK 615
G V+EFI GE+TH +++I+ VLE++ K
Sbjct: 486 NGVVNEFIAGEKTHRHIDNIHLVLEELNK 514
Score = 55.8 bits (133), Expect(2) = 6e-46
Identities = 26/47 (55%), Positives = 37/47 (78%)
Frame = +3
Query: 69 ESSIKLYNKTDKAGFQPNDITFIAVFTACSYSGMPLEGLQIFNSMTT 209
E +IKL+ + +KAG +P++ITFIAV ACS SGM EG++I+N M+T
Sbjct: 320 EGAIKLFMEMEKAGIKPDNITFIAVLAACSNSGMVDEGIRIWNRMST 366
>ref|XP_003520106.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g20540-like [Glycine max]
Length = 518
Score = 146 bits (368), Expect(2) = 4e-45
Identities = 75/146 (51%), Positives = 104/146 (71%), Gaps = 15/146 (10%)
Frame = +1
Query: 211 TVYGIQPKSEHYGCIVDFLSQAWLFEEAKGVMQRIARR-----QKQLLGR---------- 345
++Y I+PKSEHYGC+VD LS+A LF EA +++RI ++ L R
Sbjct: 366 SLYEIEPKSEHYGCLVDLLSRAGLFGEAMVMIRRITSTSWNGSEETLAWRAFLSACCNHG 425
Query: 346 KTRLAGVAAERLFELESHSGAYVLLSNMYAADGKYDDAKRIRKIMKDRGVEKTPGCSSID 525
+ +LA AA+RL LE+HSG YVLLSN+YAA GK+ DA+R+R +M+++GV+K PGCSS++
Sbjct: 426 QAQLAERAAKRLLRLENHSGVYVLLSNLYAASGKHSDARRVRNMMRNKGVDKAPGCSSVE 485
Query: 526 LTG*VHEFIVGEETHPKMEDIYQVLE 603
+ G V EFI GEETHP+ME+I+ VLE
Sbjct: 486 IDGVVSEFIAGEETHPQMEEIHSVLE 511
Score = 62.0 bits (149), Expect(2) = 4e-45
Identities = 26/46 (56%), Positives = 39/46 (84%)
Frame = +3
Query: 72 SSIKLYNKTDKAGFQPNDITFIAVFTACSYSGMPLEGLQIFNSMTT 209
S++K++++ +K G +P+DITFIAVFTACSYSGM EGLQ+ + M++
Sbjct: 321 SALKMFSEMEKTGIKPDDITFIAVFTACSYSGMAHEGLQLLDKMSS 366
>ref|XP_003614017.1| Pentatricopeptide repeat protein [Medicago truncatula]
gi|355515352|gb|AES96975.1| Pentatricopeptide repeat
protein [Medicago truncatula]
Length = 525
Score = 144 bits (362), Expect(2) = 4e-43
Identities = 74/151 (49%), Positives = 107/151 (70%), Gaps = 16/151 (10%)
Frame = +1
Query: 205 LLTVYGIQPKSEHYGCIVDFLSQAWLFEEAKGVMQRIARR----QKQLLGR--------- 345
+ +VY I PKSEHYGC+VD LS+A LFEEA ++++I ++ L R
Sbjct: 367 MCSVYNIVPKSEHYGCLVDLLSRAGLFEEAMVMIRKITNSWNGSEETLAWRAFLSACCNH 426
Query: 346 -KTRLAGVAAERLFELESH--SGAYVLLSNMYAADGKYDDAKRIRKIMKDRGVEKTPGCS 516
+T+LA +AAE++ +L++H SG YVLLSN+YAA GK+ DA+R+R +MK +G K PGCS
Sbjct: 427 GETQLAELAAEKVLQLDNHIHSGVYVLLSNLYAASGKHSDARRVRDMMKIKGTNKAPGCS 486
Query: 517 SIDLTG*VHEFIVGEETHPKMEDIYQVLEKM 609
S+++ G + EFI GE+THP+ME+I+ VL+KM
Sbjct: 487 SVEIDGVISEFIAGEKTHPQMEEIHSVLKKM 517
Score = 57.4 bits (137), Expect(2) = 4e-43
Identities = 25/45 (55%), Positives = 34/45 (75%)
Frame = +3
Query: 69 ESSIKLYNKTDKAGFQPNDITFIAVFTACSYSGMPLEGLQIFNSM 203
+ ++KL+ +K G +P+DITFIAVFTACSYSGM EGL + + M
Sbjct: 323 KGALKLFYDMEKVGVKPDDITFIAVFTACSYSGMAYEGLMLLDKM 367