BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00017971
         (988 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFP55537.1| retrotransposon polyprotein [Rosa rugosa]              291   2e-76
ref|XP_002330417.1| predicted protein [Populus trichocarpa] gi|2...   216   5e-54
emb|CAN78447.1| hypothetical protein VITISV_026810 [Vitis vinifera]   188   2e-45
pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotc...   184   2e-44
emb|CAN61322.1| hypothetical protein VITISV_012106 [Vitis vinifera]   172   1e-40

>gb|AFP55537.1| retrotransposon polyprotein [Rosa rugosa]
          Length = 1384

 Score =  291 bits (744), Expect = 2e-76
 Identities = 162/357 (45%), Positives = 223/357 (62%), Gaps = 31/357 (8%)
 Frame = +3

Query: 6    VLSTVARFTSSRDTWISLEKRYASQSQNHILQLRSDLFTTKGKGLSISDFVDKINQLADN 185
            VLSTVAR TS   TW +L  R+ASQSQ+ +LQLR+DL  T    +SISD++DK+N +ADN
Sbjct: 94   VLSTVARSTSLHATWTALATRFASQSQHRVLQLRADLLRTTRGTMSISDYLDKLNSIADN 153

Query: 186  LALAGKPINDDDLVTIIMNNVGPTYEATVCSSQARDTPISYDDLVALLLSAEMRLKAQNT 365
            LALAG P+ D DLV I+M NVGP YE TV S+QARD+PI+Y+ L  LLLSAE R+     
Sbjct: 154  LALAGSPVPDADLVNIVMTNVGPLYETTVSSAQARDSPITYEALEVLLLSAERRVSEYAH 213

Query: 366  PSLESNPTAMYAPK---------------SHQXXXXXXXXXXXXXXHMRGKG-----RG- 482
            P+      A++A +               S++              H RG+G     RG 
Sbjct: 214  PAAAEGIHALHATQSRGRGRNSFISGRGGSNRGGSYSHGITNSGSAHSRGRGTFSHSRGS 273

Query: 483  ----RGFHLGPSNYVPHDN-----NLDGLVCQICNRPRHSAIDCYERMNKAYEGRVVPTQ 635
                R   LGP+      N     N   + CQIC+RP HSAIDC+ R+N +YEGR VP+ 
Sbjct: 274  SGSRRSSILGPAPGTTTSNGNSFFNTGRIQCQICSRPGHSAIDCFNRLNLSYEGR-VPSS 332

Query: 636  KLTAMAATTSFNNNPNTWITDTAASNHITSDLANLAIHDDYQGKDQV-AVGNGVGLAIKH 812
            +L AM  T   + +  TW+TDT A++H+T +L N+     Y+G D +  + +  GL+IKH
Sbjct: 333  RLNAM--TAHHSPSEETWLTDTGANSHVTPNLGNIDSPKSYKGLDNLGGINSDSGLSIKH 390

Query: 813  IGSTNISHALSSYKMNNILHCPSVAANLLSIHQFTRDNNCFFVFFPDYFYVKDLKTG 983
            IGS+ ++ + SS+ +N+ILHCPS + NLLS+++FT DN+C+F+F+P+YF VKDLKTG
Sbjct: 391  IGSSKLNSSSSSFHLNDILHCPSASTNLLSVYKFTIDNHCYFIFYPNYFCVKDLKTG 447


>ref|XP_002330417.1| predicted protein [Populus trichocarpa] gi|222871802|gb|EEF08933.1|
           predicted protein [Populus trichocarpa]
          Length = 231

 Score =  216 bits (551), Expect = 5e-54
 Identities = 109/135 (80%), Positives = 122/135 (90%)
 Frame = +3

Query: 6   VLSTVARFTSSRDTWISLEKRYASQSQNHILQLRSDLFTTKGKGLSISDFVDKINQLADN 185
           VLSTVARFTSS+ TW SLEKRYASQS+N ILQLR DL T KG+GLSISDFVDKINQ+ADN
Sbjct: 96  VLSTVARFTSSQATWSSLEKRYASQSKNRILQLRHDLLTVKGEGLSISDFVDKINQIADN 155

Query: 186 LALAGKPINDDDLVTIIMNNVGPTYEATVCSSQARDTPISYDDLVALLLSAEMRLKAQNT 365
           LALAGKP++DD+LV II+NNVGP YE TV S+QARDT ISYDDLVALLL+AEMRLKAQ T
Sbjct: 156 LALAGKPVDDDELVNIILNNVGPAYEVTVSSAQARDTSISYDDLVALLLNAEMRLKAQQT 215

Query: 366 PSLESNPTAMYAPKS 410
           PSLE++PTAMY PK+
Sbjct: 216 PSLETSPTAMYTPKA 230


>emb|CAN78447.1| hypothetical protein VITISV_026810 [Vitis vinifera]
          Length = 1171

 Score =  188 bits (478), Expect = 2e-45
 Identities = 106/328 (32%), Positives = 166/328 (50%), Gaps = 2/328 (0%)
 Frame = +3

Query: 6    VLSTVARFTSSRDTWISLEKRYASQSQNHILQLRSDLFTTKGKGLSISDFVDKINQLADN 185
            ++ST+    +S+  W +L+ R++SQS++ I  L+  L T      S S++++    LAD 
Sbjct: 93   LVSTIYGLETSKQVWTALQTRFSSQSRSRISHLKRQLQTLTQGTKSCSEYLESAKTLADQ 152

Query: 186  LALAGKPINDDDLVTIIMNNVGPTYEATVCSSQ--ARDTPISYDDLVALLLSAEMRLKAQ 359
            LA AGKP++D DL++ ++  +  +Y   V S    +R+T  +++D  A LL  E  L   
Sbjct: 153  LAAAGKPVDDQDLISFLLGGLQSSYTPFVTSFNFASRETDFTFEDFQAELLGYENLLDVN 212

Query: 360  NTPSLESNPTAMYAPKSHQXXXXXXXXXXXXXXHMRGKGRGRGFHLGPSNYVPHDNNLDG 539
            ++      P   +A    +                        +    +   P     + 
Sbjct: 213  HSVHNTDGPHFAFAANKSKAPTYVQKKGPPLPPTKMQNAASSNYRSQQTRSTPSQLPNNR 272

Query: 540  LVCQICNRPRHSAIDCYERMNKAYEGRVVPTQKLTAMAATTSFNNNPNTWITDTAASNHI 719
             VCQIC +  H+AIDC+ R + +Y+GR  P Q L AM A T+   +   W  D+ A+ HI
Sbjct: 273  PVCQICGKSGHTAIDCFHRFDYSYQGRF-PPQDLAAMVAETNATFDHQVWYMDSGANAHI 331

Query: 720  TSDLANLAIHDDYQGKDQVAVGNGVGLAIKHIGSTNISHALSSYKMNNILHCPSVAANLL 899
            TSD  NL     +   + V VGNG GL + + GST  +   S++ +N ILHCP  A NL+
Sbjct: 332  TSDATNLTHQQPFCESETVTVGNGSGLQVLNTGSTTFNFGQSNFHLNKILHCPQAATNLI 391

Query: 900  SIHQFTRDNNCFFVFFPDYFYVKDLKTG 983
            SI+QF  DNNC+F+   + F VK+  TG
Sbjct: 392  SINQFCLDNNCYFILTANGFVVKENLTG 419


>pir||T02087 gag/pol polyprotein - maize retrotransposon Hopscotch
            gi|531389|gb|AAA57005.1| copia-like retrotransposon
            Hopscotch polyprotein [Zea mays]
          Length = 1439

 Score =  184 bits (468), Expect = 2e-44
 Identities = 109/334 (32%), Positives = 167/334 (50%), Gaps = 9/334 (2%)
 Frame = +3

Query: 6    VLSTVARFTSSRDTWISLEKRYASQSQNHILQLRSDLFTTKGKGLSISDFVDKINQLADN 185
            VLS+V   ++S   W +L + Y+S S+   +  R  L TTK    S++++  K+   AD 
Sbjct: 97   VLSSVVNCSTSASVWTTLSEMYSSHSRARKVNTRIALATTKKGASSVAEYFAKMRGFADE 156

Query: 186  LALAGKPINDDDLVTIIMNNVGPTYEATVCSSQARDTPISYDDLVALLLSAEMRLKAQNT 365
            L  AGKP++D++ V+ ++  +   +   V +  AR  PI+  DL   LLS E R+  Q  
Sbjct: 157  LGAAGKPLDDEEFVSFLLTGLDEDFNPLVTAVVARSDPITPGDLYTQLLSYENRMHLQTG 216

Query: 366  PSLESNPTAMYAPKSHQXXXXXXXXXXXXXXHMRGKGRGRGFHLGPSNYVPHDNNLDGLV 545
             S     +A     +                  RG+GRGRG   G        NN  G  
Sbjct: 217  SSSLMQSSA----NARSPGRGMSWGRSGGRGFSRGRGRGRGPSRGGFQSFGRGNNYSGAT 272

Query: 546  ---------CQICNRPRHSAIDCYERMNKAYEGRVVPTQKLTAMAATTSFNNNPNTWITD 698
                     CQ+C+R  H+A++C+ R ++ Y    VP Q+    AA  + +N P  W TD
Sbjct: 273  DADTSSRPRCQVCSRVGHTALNCWYRFDENY----VPDQRSANSAAHQNGSNVP--WYTD 326

Query: 699  TAASNHITSDLANLAIHDDYQGKDQVAVGNGVGLAIKHIGSTNISHALSSYKMNNILHCP 878
            T A++HIT DL  L +HD Y G DQ+   NG G+ I +IG+  +  +  S  + ++LH P
Sbjct: 327  TGATDHITGDLDRLTMHDKYTGTDQIIAANGTGMTISNIGNAIVPTSSRSLHLRSVLHVP 386

Query: 879  SVAANLLSIHQFTRDNNCFFVFFPDYFYVKDLKT 980
            S   NL+S+H+ T DN+ F  F   +F +KD +T
Sbjct: 387  STHKNLISVHRLTNDNDVFIEFHSSHFLIKDRQT 420


>emb|CAN61322.1| hypothetical protein VITISV_012106 [Vitis vinifera]
          Length = 1432

 Score =  172 bits (436), Expect = 1e-40
 Identities = 107/343 (31%), Positives = 175/343 (51%), Gaps = 18/343 (5%)
 Frame = +3

Query: 6    VLSTVARFTSSRDTWISLEKRYASQSQNHILQLRSDLFTTKGKGLSISDFVDKINQLADN 185
            +++ +    +S   W +LE  ++S S+  I+QLR +L +TK   +S+ D++ KI   ADN
Sbjct: 107  IMAQIIGHNTSHSAWNALESIFSSSSRARIMQLRLELQSTKKGSMSMIDYIMKIKGAADN 166

Query: 186  LALAGKPINDDDLVTIIMNNVGPTYEATVCSSQARDTPISYDDLVALLLSAEMRLKAQNT 365
            LA  G+P+++ D V  ++  +G  Y A V +   RD  IS + + ++LL+ E RL+ Q+ 
Sbjct: 167  LAAIGEPVSEQDQVMNLLGGLGSDYNAVVTAINIRDDKISLEAIHSMLLAFEHRLEQQS- 225

Query: 366  PSLESNPTAMYAPKSHQXXXXXXXXXXXXXXHM--------RGKGRG-RGFHLGPSNYVP 518
             S+E   +A YA  S+               +         RG+GRG R    G  N  P
Sbjct: 226  -SIEQM-SANYASSSNNRGGGRKFNGGRGQGYSPNNNNYTYRGRGRGGRNGQGGRQNSSP 283

Query: 519  HDNNLDGLVCQICNRPRHSAIDCYERMNKAYEGRVVPTQ---------KLTAMAATTSFN 671
             +       CQ+C +  H+A  CY R + +++G                + AM A+ S N
Sbjct: 284  SEKPQ----CQLCGKFGHTAQICYHRFDISFQGGQTTISHSLNNGNQNNIPAMVASASNN 339

Query: 672  NNPNTWITDTAASNHITSDLANLAIHDDYQGKDQVAVGNGVGLAIKHIGSTNISHALSSY 851
                +W  D+ AS+H+T +L NL     Y G D+V +GNG  L+I +IGS  +     S+
Sbjct: 340  PADESWYLDSGASHHLTQNLGNLTSTSPYTGTDKVTIGNGKHLSISNIGSKQLHSHTHSF 399

Query: 852  KMNNILHCPSVAANLLSIHQFTRDNNCFFVFFPDYFYVKDLKT 980
            ++  + H P ++ANL+S+ +F  +NN    F  + F+VKDL T
Sbjct: 400  RLKKVFHVPFISANLISVAKFCSENNALIEFHSNAFFVKDLHT 442