BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00017930
         (542 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002279821.1| PREDICTED: pentatricopeptide repeat-containi...   220   9e-56
emb|CBI36158.3| unnamed protein product [Vitis vinifera]              220   9e-56
ref|XP_002528197.1| pentatricopeptide repeat-containing protein,...   206   1e-51
ref|XP_002299640.1| predicted protein [Populus trichocarpa] gi|2...   206   2e-51
ref|XP_003542104.1| PREDICTED: pentatricopeptide repeat-containi...   204   5e-51

>ref|XP_002279821.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g16010-like [Vitis vinifera]
          Length = 725

 Score =  220 bits (561), Expect = 9e-56
 Identities = 108/153 (70%), Positives = 131/153 (85%), Gaps = 3/153 (1%)
 Frame = +3

Query: 93  DNEIVKMFQLPTPMNDTHQ--HNPKHNHRGP-VRLLDERFIRILKIFKWGPDAEKALEVL 263
           ++EIV+MF+L +P ++  +   N K     P VR LDERFIRILKIFKWGPDAEKALEVL
Sbjct: 26  ESEIVQMFKLSSPKDEIQRLPMNQKFPRNNPSVRTLDERFIRILKIFKWGPDAEKALEVL 85

Query: 264 MLKVDHRLVREVMKINVEITVKLHFFKWAGKRKNFEHDSSTYMALVHSLDECGRVGELWK 443
            LKVDHRLVREV+KI+VEI VK+ FFKWAGKR+NFEHDS+TYMAL+H LDE G +GE+WK
Sbjct: 86  KLKVDHRLVREVLKIDVEIHVKIQFFKWAGKRRNFEHDSTTYMALIHCLDEAGMLGEMWK 145

Query: 444 TVQDMVRSSCIIGPAELCEIVRILGKAKMVNKA 542
           T+Q+MVRS+C+IGPA+L EIV++LGKAKMVNKA
Sbjct: 146 TIQEMVRSTCVIGPADLSEIVKVLGKAKMVNKA 178


>emb|CBI36158.3| unnamed protein product [Vitis vinifera]
          Length = 638

 Score =  220 bits (561), Expect = 9e-56
 Identities = 108/153 (70%), Positives = 131/153 (85%), Gaps = 3/153 (1%)
 Frame = +3

Query: 93  DNEIVKMFQLPTPMNDTHQ--HNPKHNHRGP-VRLLDERFIRILKIFKWGPDAEKALEVL 263
           ++EIV+MF+L +P ++  +   N K     P VR LDERFIRILKIFKWGPDAEKALEVL
Sbjct: 26  ESEIVQMFKLSSPKDEIQRLPMNQKFPRNNPSVRTLDERFIRILKIFKWGPDAEKALEVL 85

Query: 264 MLKVDHRLVREVMKINVEITVKLHFFKWAGKRKNFEHDSSTYMALVHSLDECGRVGELWK 443
            LKVDHRLVREV+KI+VEI VK+ FFKWAGKR+NFEHDS+TYMAL+H LDE G +GE+WK
Sbjct: 86  KLKVDHRLVREVLKIDVEIHVKIQFFKWAGKRRNFEHDSTTYMALIHCLDEAGMLGEMWK 145

Query: 444 TVQDMVRSSCIIGPAELCEIVRILGKAKMVNKA 542
           T+Q+MVRS+C+IGPA+L EIV++LGKAKMVNKA
Sbjct: 146 TIQEMVRSTCVIGPADLSEIVKVLGKAKMVNKA 178


>ref|XP_002528197.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223532409|gb|EEF34204.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 642

 Score =  206 bits (525), Expect = 1e-51
 Identities = 107/155 (69%), Positives = 125/155 (80%), Gaps = 5/155 (3%)
 Frame = +3

Query: 93  DNEIVKMFQLPTPMNDTHQHNPKHNHRG----PVRLLDERFIRILKIFKWGPDAEKALEV 260
           DNEIV MF++P+ MN+  Q+ P +          R LDERFIRILKIFKWGPDAEKALEV
Sbjct: 29  DNEIVNMFRVPS-MNNKMQNLPMNRKFSGKDTSTRKLDERFIRILKIFKWGPDAEKALEV 87

Query: 261 LMLKVDHRLVREVMKINVEITVKLHFFKWAGKRKNFEHDSSTYMALVHSLDECGRVGELW 440
           L LKVDHRLV EV+KI+VEI VK+ FFKWAGKR+NFEHDSS++MAL+HSLDE G  GE+W
Sbjct: 88  LKLKVDHRLVHEVLKIDVEINVKIQFFKWAGKRRNFEHDSSSFMALIHSLDEAGFYGEMW 147

Query: 441 KTVQDMVRSS-CIIGPAELCEIVRILGKAKMVNKA 542
           KT+QDMVRSS C+I    L EIV++LGKAKMVNKA
Sbjct: 148 KTIQDMVRSSTCVISSVYLSEIVKLLGKAKMVNKA 182


>ref|XP_002299640.1| predicted protein [Populus trichocarpa] gi|222846898|gb|EEE84445.1|
           predicted protein [Populus trichocarpa]
          Length = 609

 Score =  206 bits (523), Expect = 2e-51
 Identities = 103/150 (68%), Positives = 124/150 (82%), Gaps = 6/150 (4%)
 Frame = +3

Query: 111 MFQLPTPMNDTHQH----NPKHNHRGP-VRLLDERFIRILKIFKWGPDAEKALEVLMLKV 275
           MF++P+  +D  Q+    N K + R P VR LDERFIRILKIFKWGPDAEKALEVL LKV
Sbjct: 1   MFKVPSSKDDEMQNLPTQNSKFSRRDPSVRTLDERFIRILKIFKWGPDAEKALEVLKLKV 60

Query: 276 DHRLVREVMKINVEITVKLHFFKWAGKRKNFEHDSSTYMALVHSLDECGRVGELWKTVQD 455
           DHRLVREV+KI+VEI VK+ FFKWAGKR+NFEHD +TYM L+  LD+CG  GE+WK +Q+
Sbjct: 61  DHRLVREVLKIDVEINVKIQFFKWAGKRRNFEHDLTTYMPLIRCLDDCGLFGEMWKMIQE 120

Query: 456 MVRS-SCIIGPAELCEIVRILGKAKMVNKA 542
           MVRS +C+IGPA+L E+V+ILGKAKMVNKA
Sbjct: 121 MVRSPTCVIGPADLSEVVKILGKAKMVNKA 150


>ref|XP_003542104.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g16010-like [Glycine max]
          Length = 631

 Score =  204 bits (520), Expect = 5e-51
 Identities = 105/155 (67%), Positives = 123/155 (79%), Gaps = 5/155 (3%)
 Frame = +3

Query: 93  DNEIVKMFQLPTPMNDTHQHNP-KHNH---RGPV-RLLDERFIRILKIFKWGPDAEKALE 257
           +NEI +MF+LP      H +N  K  H   R P  R LDERFIRILKIFKWGPDAEKALE
Sbjct: 18  ENEIAQMFRLPNSHEGNHLNNSMKGGHVLRRDPYSRTLDERFIRILKIFKWGPDAEKALE 77

Query: 258 VLMLKVDHRLVREVMKINVEITVKLHFFKWAGKRKNFEHDSSTYMALVHSLDECGRVGEL 437
           VL LKVD RLVRE++KI+VE++VK+ FFKWAGKR+NFEHDS+TYMAL+  LDE    GE+
Sbjct: 78  VLKLKVDPRLVREILKIDVEVSVKIQFFKWAGKRRNFEHDSTTYMALIRCLDEHRMFGEV 137

Query: 438 WKTVQDMVRSSCIIGPAELCEIVRILGKAKMVNKA 542
           WKT+QDMV+ SC + PAEL EIVRILGKAKMVN+A
Sbjct: 138 WKTIQDMVKGSCAMAPAELSEIVRILGKAKMVNRA 172