BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00017875
         (469 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004157334.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...    46   1e-10
ref|XP_004143828.1| PREDICTED: pentatricopeptide repeat-containi...    46   1e-10
ref|XP_002274352.1| PREDICTED: pentatricopeptide repeat-containi...    45   3e-09
ref|XP_003520106.1| PREDICTED: pentatricopeptide repeat-containi...    43   1e-07
ref|XP_003614017.1| Pentatricopeptide repeat protein [Medicago t...    45   2e-07

>ref|XP_004157334.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g20540-like [Cucumis sativus]
          Length = 532

 Score = 46.2 bits (108), Expect(2) = 1e-10
 Identities = 27/50 (54%), Positives = 30/50 (60%), Gaps = 4/50 (8%)
 Frame = +2

Query: 182 VAA*RLFQLES*WSLCSTVQNLYAADGKQNDAKRIRR----TGVEKTPGC 319
           VAA RLFQLE        + N+YAA GK  DAKR+R      GVEK PGC
Sbjct: 431 VAAERLFQLERHSGAYVLLSNMYAALGKHEDAKRVRNMMKLKGVEKVPGC 480



 Score = 44.3 bits (103), Expect(2) = 1e-10
 Identities = 26/65 (40%), Positives = 36/65 (55%)
 Frame = +1

Query: 7   YWCSIEE*KLGMLGRAELFEEAKEVMQRISYSCSTSEVVIARREILTCCCDHLKTQLACC 186
           Y C I+     +L R   FEEA+ V+QR+  + S SE  +A R  L+ CC H +TQ A  
Sbjct: 377 YGCVID-----LLSRVGRFEEAEGVIQRLPKTASPSEEAVAWRAFLSACCKHGQTQQAEV 431

Query: 187 SLEAL 201
           + E L
Sbjct: 432 AAERL 436


>ref|XP_004143828.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Cucumis sativus]
          Length = 532

 Score = 46.2 bits (108), Expect(2) = 1e-10
 Identities = 27/50 (54%), Positives = 30/50 (60%), Gaps = 4/50 (8%)
 Frame = +2

Query: 182 VAA*RLFQLES*WSLCSTVQNLYAADGKQNDAKRIRR----TGVEKTPGC 319
           VAA RLFQLE        + N+YAA GK  DAKR+R      GVEK PGC
Sbjct: 431 VAAERLFQLERHSGAYVLLSNMYAALGKHEDAKRVRNMMKLKGVEKVPGC 480



 Score = 44.3 bits (103), Expect(2) = 1e-10
 Identities = 26/65 (40%), Positives = 36/65 (55%)
 Frame = +1

Query: 7   YWCSIEE*KLGMLGRAELFEEAKEVMQRISYSCSTSEVVIARREILTCCCDHLKTQLACC 186
           Y C I+     +L R   FEEA+ V+QR+  + S SE  +A R  L+ CC H +TQ A  
Sbjct: 377 YGCVID-----LLSRVGRFEEAEGVIQRLPKTASPSEEAVAWRAFLSACCKHGQTQQAEV 431

Query: 187 SLEAL 201
           + E L
Sbjct: 432 AAERL 436


>ref|XP_002274352.1| PREDICTED: pentatricopeptide repeat-containing protein At5g66520
           [Vitis vinifera]
          Length = 536

 Score = 45.1 bits (105), Expect(2) = 3e-09
 Identities = 23/58 (39%), Positives = 37/58 (63%)
 Frame = +1

Query: 7   YWCSIEE*KLGMLGRAELFEEAKEVMQRISYSCSTSEVVIARREILTCCCDHLKTQLA 180
           Y C ++     +LGRA L +EAKE++ ++  S S +E  IA R +L+ CC H +T++A
Sbjct: 377 YGCIVD-----LLGRAGLLKEAKELILKMPNSSSPTEQAIAWRALLSACCSHGQTEVA 429



 Score = 41.2 bits (95), Expect(2) = 3e-09
 Identities = 24/49 (48%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
 Frame = +2

Query: 185 AA*RLFQLES*WSLCSTVQNLYAADGKQNDAKRIRR----TGVEKTPGC 319
           AA RLF LE        + NLYAA GKQ+  +RIR+     GV+K PGC
Sbjct: 432 AAQRLFHLEHHSGAYVLLSNLYAAAGKQDHVRRIRKMMENRGVDKAPGC 480


>ref|XP_003520106.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g20540-like [Glycine max]
          Length = 518

 Score = 42.7 bits (99), Expect(2) = 1e-07
 Identities = 23/49 (46%), Positives = 31/49 (63%), Gaps = 4/49 (8%)
 Frame = +2

Query: 185 AA*RLFQLES*WSLCSTVQNLYAADGKQNDAKRI----RRTGVEKTPGC 319
           AA RL +LE+   +   + NLYAA GK +DA+R+    R  GV+K PGC
Sbjct: 433 AAKRLLRLENHSGVYVLLSNLYAASGKHSDARRVRNMMRNKGVDKAPGC 481



 Score = 38.1 bits (87), Expect(2) = 1e-07
 Identities = 24/59 (40%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
 Frame = +1

Query: 7   YWCSIEE*KLGMLGRAELFEEAKEVMQRI-SYSCSTSEVVIARREILTCCCDHLKTQLA 180
           Y C ++     +L RA LF EA  +++RI S S + SE  +A R  L+ CC+H + QLA
Sbjct: 377 YGCLVD-----LLSRAGLFGEAMVMIRRITSTSWNGSEETLAWRAFLSACCNHGQAQLA 430


>ref|XP_003614017.1| Pentatricopeptide repeat protein [Medicago truncatula]
           gi|355515352|gb|AES96975.1| Pentatricopeptide repeat
           protein [Medicago truncatula]
          Length = 525

 Score = 45.1 bits (105), Expect(2) = 2e-07
 Identities = 24/58 (41%), Positives = 37/58 (63%)
 Frame = +1

Query: 7   YWCSIEE*KLGMLGRAELFEEAKEVMQRISYSCSTSEVVIARREILTCCCDHLKTQLA 180
           Y C ++     +L RA LFEEA  ++++I+ S + SE  +A R  L+ CC+H +TQLA
Sbjct: 380 YGCLVD-----LLSRAGLFEEAMVMIRKITNSWNGSEETLAWRAFLSACCNHGETQLA 432



 Score = 34.7 bits (78), Expect(2) = 2e-07
 Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 4/32 (12%)
 Frame = +2

Query: 236 VQNLYAADGKQNDAKRIRR----TGVEKTPGC 319
           + NLYAA GK +DA+R+R      G  K PGC
Sbjct: 454 LSNLYAASGKHSDARRVRDMMKIKGTNKAPGC 485