BLASTX nr result
ID: Coptis21_contig00017832
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis21_contig00017832 (449 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_003621614.1| DNA-directed RNA polymerase III subunit RPC6... 59 3e-07 ref|XP_003530702.1| PREDICTED: TMV resistance protein N-like [Gl... 57 2e-06 gb|AFK38936.1| unknown [Medicago truncatula] 55 8e-06 >ref|XP_003621614.1| DNA-directed RNA polymerase III subunit RPC6 [Medicago truncatula] gi|355496629|gb|AES77832.1| DNA-directed RNA polymerase III subunit RPC6 [Medicago truncatula] Length = 456 Score = 59.3 bits (142), Expect = 3e-07 Identities = 36/116 (31%), Positives = 53/116 (45%) Frame = +1 Query: 1 LPANTQLFLWKAYMNLLPTGDVLTAHKLKGDYICPLCWMENEDPLHLFFQCEWIRGVWFA 180 LP + F+WK N++PT L + D +CPLC+ +E H F C VWFA Sbjct: 268 LPTRVRNFMWKLARNIIPTRCNLRRRGVVLDTVCPLCFDADESSNHRFMACPMTLQVWFA 327 Query: 181 SEVGARVETRAELTTRDWLDELLGWTKDKDPGKAEKXXXXXXXMHEIWEVRNKAKF 348 S +G + + +L W LL W K+P + + +IW RN+ F Sbjct: 328 SPLGFQPPPQTDLNA--W---LLSWLSAKEPLAVQ---LFCVCLWKIWFFRNQVIF 375 >ref|XP_003530702.1| PREDICTED: TMV resistance protein N-like [Glycine max] Length = 1248 Score = 57.0 bits (136), Expect = 2e-06 Identities = 25/78 (32%), Positives = 39/78 (50%) Frame = +1 Query: 4 PANTQLFLWKAYMNLLPTGDVLTAHKLKGDYICPLCWMENEDPLHLFFQCEWIRGVWFAS 183 PA+ ++ +W N LPT + L KL +CP+C E E H F C W R +WF S Sbjct: 1105 PADVKVLMWSICQNALPTFEYLFRRKLVNSPLCPICGTEPETVEHAFLFCPWTRPLWFGS 1164 Query: 184 EVGARVETRAELTTRDWL 237 + ++ + + + WL Sbjct: 1165 DFQWCIDAKTVQSFQLWL 1182 >gb|AFK38936.1| unknown [Medicago truncatula] Length = 297 Score = 54.7 bits (130), Expect = 8e-06 Identities = 33/108 (30%), Positives = 50/108 (46%) Frame = +1 Query: 25 LWKAYMNLLPTGDVLTAHKLKGDYICPLCWMENEDPLHLFFQCEWIRGVWFASEVGARVE 204 +W+ N++PT L + D +CPLC+ +E HLF C VWFAS +G + Sbjct: 1 MWRLARNIIPTRCNLRRRGVVLDTVCPLCFDADESSNHLFMACPMTLQVWFASPLGFQPP 60 Query: 205 TRAELTTRDWLDELLGWTKDKDPGKAEKXXXXXXXMHEIWEVRNKAKF 348 + +L WL W K+P + + +IW RN+A F Sbjct: 61 PQTDLNA--WLQ---SWLSAKEPLAVQ---LFCVCLWKIWFFRNQAIF 100