BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00017832
         (449 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003621614.1| DNA-directed RNA polymerase III subunit RPC6...    59   3e-07
ref|XP_003530702.1| PREDICTED: TMV resistance protein N-like [Gl...    57   2e-06
gb|AFK38936.1| unknown [Medicago truncatula]                           55   8e-06

>ref|XP_003621614.1| DNA-directed RNA polymerase III subunit RPC6 [Medicago truncatula]
           gi|355496629|gb|AES77832.1| DNA-directed RNA polymerase
           III subunit RPC6 [Medicago truncatula]
          Length = 456

 Score = 59.3 bits (142), Expect = 3e-07
 Identities = 36/116 (31%), Positives = 53/116 (45%)
 Frame = +1

Query: 1   LPANTQLFLWKAYMNLLPTGDVLTAHKLKGDYICPLCWMENEDPLHLFFQCEWIRGVWFA 180
           LP   + F+WK   N++PT   L    +  D +CPLC+  +E   H F  C     VWFA
Sbjct: 268 LPTRVRNFMWKLARNIIPTRCNLRRRGVVLDTVCPLCFDADESSNHRFMACPMTLQVWFA 327

Query: 181 SEVGARVETRAELTTRDWLDELLGWTKDKDPGKAEKXXXXXXXMHEIWEVRNKAKF 348
           S +G +   + +L    W   LL W   K+P   +        + +IW  RN+  F
Sbjct: 328 SPLGFQPPPQTDLNA--W---LLSWLSAKEPLAVQ---LFCVCLWKIWFFRNQVIF 375


>ref|XP_003530702.1| PREDICTED: TMV resistance protein N-like [Glycine max]
          Length = 1248

 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 25/78 (32%), Positives = 39/78 (50%)
 Frame = +1

Query: 4    PANTQLFLWKAYMNLLPTGDVLTAHKLKGDYICPLCWMENEDPLHLFFQCEWIRGVWFAS 183
            PA+ ++ +W    N LPT + L   KL    +CP+C  E E   H F  C W R +WF S
Sbjct: 1105 PADVKVLMWSICQNALPTFEYLFRRKLVNSPLCPICGTEPETVEHAFLFCPWTRPLWFGS 1164

Query: 184  EVGARVETRAELTTRDWL 237
            +    ++ +   + + WL
Sbjct: 1165 DFQWCIDAKTVQSFQLWL 1182


>gb|AFK38936.1| unknown [Medicago truncatula]
          Length = 297

 Score = 54.7 bits (130), Expect = 8e-06
 Identities = 33/108 (30%), Positives = 50/108 (46%)
 Frame = +1

Query: 25  LWKAYMNLLPTGDVLTAHKLKGDYICPLCWMENEDPLHLFFQCEWIRGVWFASEVGARVE 204
           +W+   N++PT   L    +  D +CPLC+  +E   HLF  C     VWFAS +G +  
Sbjct: 1   MWRLARNIIPTRCNLRRRGVVLDTVCPLCFDADESSNHLFMACPMTLQVWFASPLGFQPP 60

Query: 205 TRAELTTRDWLDELLGWTKDKDPGKAEKXXXXXXXMHEIWEVRNKAKF 348
            + +L    WL     W   K+P   +        + +IW  RN+A F
Sbjct: 61  PQTDLNA--WLQ---SWLSAKEPLAVQ---LFCVCLWKIWFFRNQAIF 100