BLASTX nr result
ID: Coptis21_contig00017807
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00017807
(1188 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI22720.3| unnamed protein product [Vitis vinifera] 374 e-101
ref|XP_002267664.2| PREDICTED: DNA-directed RNA polymerase III s... 362 1e-97
ref|XP_003555382.1| PREDICTED: DNA-directed RNA polymerase III s... 299 8e-79
ref|XP_002321920.1| predicted protein [Populus trichocarpa] gi|2... 298 2e-78
ref|XP_003535613.1| PREDICTED: DNA-directed RNA polymerase III s... 296 9e-78
>emb|CBI22720.3| unnamed protein product [Vitis vinifera]
Length = 524
Score = 374 bits (959), Expect = e-101
Identities = 206/352 (58%), Positives = 255/352 (72%), Gaps = 6/352 (1%)
Frame = -3
Query: 1153 DNSTRKRGAKSASFVRT-KTLEQQVITAAVSL--KRFDFTMNTGADVISEANALRKPANV 983
+ RKRGAKSA V +T+EQ+ I AA + KRF +NTG DV N V
Sbjct: 180 ETPARKRGAKSAKLVEEPQTIEQRAIAAAAPMDAKRFSVIINTGTDVDDSPN-------V 232
Query: 982 TVGEKRKVEALEMDD--GTIDEKDILWRANFEEFICHLKQKACIASVRSRLDDEVGVTLN 809
T GEKRK +ALE+D G EKD+LWRANFEEF+ L+ KACIA+V++RLDD + L+
Sbjct: 233 TAGEKRKQDALELDKETGASCEKDVLWRANFEEFVRCLRHKACIANVKTRLDDGAAIVLS 292
Query: 808 AVLDATRGPEKKVKVENSVPLSLDAIFEEVIKSDEGRCMTKERVDLALSQMGCHPTTIGT 629
A+L+ATR EKKVK ENSVPLS+D IFE V+KS+ GR MT ERV +L Q+GC P G
Sbjct: 293 AMLEATRSEEKKVKTENSVPLSMDTIFEGVMKSEAGRSMTLERVRGSLIQLGCAPCVRGA 352
Query: 628 KASYSVDVKSIIEIARKEEVESLISKRYGKDACRMFKLLWKNGELMETDKISDTAFVNKN 449
SYSVD+K+IIE+A+ +EVES+ KRYG+DA R+F+LL K+ L+ETDKISDT FV K
Sbjct: 353 AESYSVDLKNIIELAQNDEVESITLKRYGRDAYRIFRLLSKSCRLLETDKISDTTFVEKK 412
Query: 448 EALKSLSNLGKDGYLQMEKPVSQGA-QSQFLLWKVNKSSLREHVFDEMCHAALNLRLRLA 272
+ K L L KD YLQMEK G+ QSQFLLWKV K +L HV +EM H+ALNL LR+A
Sbjct: 413 DTAKILYQLWKDEYLQMEKLNLHGSRQSQFLLWKVTKDTLWGHVLNEMYHSALNLSLRVA 472
Query: 271 YELEQEHEILQLPKHKRIGAEGKRYERIRDVNILLESSLMKLDEALMLFHDY 116
YELEQE EI+QLP+ KR+GA G R+ER+R V ILLESSLMKLD+A+MLF+D+
Sbjct: 473 YELEQEQEIIQLPREKRVGALGNRFERLRKVRILLESSLMKLDDAIMLFNDF 524
>ref|XP_002267664.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC3 [Vitis
vinifera]
Length = 511
Score = 362 bits (928), Expect = 1e-97
Identities = 201/352 (57%), Positives = 250/352 (71%), Gaps = 6/352 (1%)
Frame = -3
Query: 1153 DNSTRKRGAKSASFVRT-KTLEQQVITAAVSL--KRFDFTMNTGADVISEANALRKPANV 983
+ RKRGAKSA V +T+EQ+ I AA + KRF +NTG DV N
Sbjct: 173 ETPARKRGAKSAKLVEEPQTIEQRAIAAAAPMDAKRFSVIINTGTDVDDSPN-------- 224
Query: 982 TVGEKRKVEALEMDD--GTIDEKDILWRANFEEFICHLKQKACIASVRSRLDDEVGVTLN 809
RK +ALE+D G EKD+LWRANFEEF+ L+ KACIA+V++RLDD + L+
Sbjct: 225 -----RKQDALELDKETGASCEKDVLWRANFEEFVRCLRHKACIANVKTRLDDGAAIVLS 279
Query: 808 AVLDATRGPEKKVKVENSVPLSLDAIFEEVIKSDEGRCMTKERVDLALSQMGCHPTTIGT 629
A+L+ATR EKKVK ENSVPLS+D IFE V+KS+ GR MT ERV +L Q+GC P G
Sbjct: 280 AMLEATRSEEKKVKTENSVPLSMDTIFEGVMKSEAGRSMTLERVRGSLIQLGCAPCVRGA 339
Query: 628 KASYSVDVKSIIEIARKEEVESLISKRYGKDACRMFKLLWKNGELMETDKISDTAFVNKN 449
SYSVD+K+IIE+A+ +EVES+ KRYG+DA R+F+LL K+ L+ETDKISDT FV K
Sbjct: 340 AESYSVDLKNIIELAQNDEVESITLKRYGRDAYRIFRLLSKSCRLLETDKISDTTFVEKK 399
Query: 448 EALKSLSNLGKDGYLQMEKPVSQGA-QSQFLLWKVNKSSLREHVFDEMCHAALNLRLRLA 272
+ K L L KD YLQMEK G+ QSQFLLWKV K +L HV +EM H+ALNL LR+A
Sbjct: 400 DTAKILYQLWKDEYLQMEKLNLHGSRQSQFLLWKVTKDTLWGHVLNEMYHSALNLSLRVA 459
Query: 271 YELEQEHEILQLPKHKRIGAEGKRYERIRDVNILLESSLMKLDEALMLFHDY 116
YELEQE EI+QLP+ KR+GA G R+ER+R V ILLESSLMKLD+A+MLF+D+
Sbjct: 460 YELEQEQEIIQLPREKRVGALGNRFERLRKVRILLESSLMKLDDAIMLFNDF 511
>ref|XP_003555382.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like [Glycine
max]
Length = 518
Score = 299 bits (766), Expect = 8e-79
Identities = 175/362 (48%), Positives = 236/362 (65%), Gaps = 7/362 (1%)
Frame = -3
Query: 1180 EPSVRLQDGDNSTRKRGAKSAS-FVRTKTLEQQVITAAV--SLKRFDFTMNTGADVISEA 1010
EP V + +T+KRGAKSA F +TLEQ+V+ AAV + RF T N G++V E
Sbjct: 170 EPVVSTSFKETTTKKRGAKSAKIFEAPETLEQRVVDAAVPGDVIRFSLTANMGSNVDRET 229
Query: 1009 NALRKPANVTVGEKRKVEALEMDDGTIDEKDILWRANFEEFICHLKQKACIASVRSRLDD 830
N+ V + +++ E+ ILWRANFEEFI HL+ K I +VR++ DD
Sbjct: 230 NS------------DDVPMISVEEDVAKEEQILWRANFEEFIRHLRHKVLIENVRTQHDD 277
Query: 829 EVGVTLNAVLDATRGPEKKVKVENSVPLSLDAIFEEVIKSDEGRCMTKERVDLALSQMGC 650
L+AVL+AT EKKVK++NSVPLSLD I EV+K+D GR MT +R+ +L Q+GC
Sbjct: 278 GTATVLSAVLEATGSVEKKVKMDNSVPLSLDTIITEVMKTDTGRTMTIDRIRASLVQLGC 337
Query: 649 HPTTIGTKASYSVDVKSIIEIARKEEVESLISKRYGKDACRMFKLLWKNGELMETDKISD 470
P+ I + SY +D+K IIE AR EEVES++ KRYG+DA RMF+LL K+ +TD+I+
Sbjct: 338 SPSMI-LEESYCIDLKKIIEPARNEEVESIVLKRYGRDAYRMFRLLAKDCCFHDTDQIAA 396
Query: 469 TAFVNKNEALKSLSNLGKDGYLQMEK--PVSQGAQSQFLLWKVNKSSLREHVFDEMCHAA 296
+ V K EA K L L KD YL MEK + Q L+WKVNK L E+V DEM HAA
Sbjct: 397 STLVEKKEASKLLYKLWKDNYLYMEKVGATAGAKQITILMWKVNKPLLWEYVLDEMYHAA 456
Query: 295 LNLRLRLAYELEQEHEILQLPKHK--RIGAEGKRYERIRDVNILLESSLMKLDEALMLFH 122
LNL LR+A+E E++ E+L++PK K G K+Y+R+ +V +L+ SSL+KLD+ALMLFH
Sbjct: 457 LNLSLRMAFEQEKDEELLKVPKDKLREPGPLQKKYKRLLNVRLLMGSSLLKLDDALMLFH 516
Query: 121 DY 116
D+
Sbjct: 517 DF 518
>ref|XP_002321920.1| predicted protein [Populus trichocarpa] gi|222868916|gb|EEF06047.1|
predicted protein [Populus trichocarpa]
Length = 519
Score = 298 bits (763), Expect = 2e-78
Identities = 172/365 (47%), Positives = 243/365 (66%), Gaps = 9/365 (2%)
Frame = -3
Query: 1183 SEPSVRLQDGDNST--RKRGAKSA-SFVRTKTLEQQVITAAVSLKRFDFTMNTGADVISE 1013
SEP + L + + R+RGAKSA +F+ +TLEQ+V+ AAV + F+ ++ ++
Sbjct: 165 SEPFLALPSEEEAAPVRRRGAKSAKAFLEPETLEQRVLVAAVPPEGMRFSFELNPEIGAD 224
Query: 1012 ANALRKPANVTVGEKRKVEALEMD-DGTIDEKDI-LWRANFEEFICHLKQKACIASVRSR 839
+ + ++ +G+KRK++ALE D DG + +K + LWR NFEEFI L+ K CI +VR+R
Sbjct: 225 RDKVENNSSSNIGDKRKLDALESDIDGGVADKQVALWRVNFEEFIRRLRHKICIETVRTR 284
Query: 838 LDDEVGVTLNAVLDATRGPEKKVKVENSVPLSLDAIFEEVIKSDEGRCMTKERVDLALSQ 659
LDDE A+LDA+R EKK+K +SVPLS ++I+ EVIKS++GR MT + V L
Sbjct: 285 LDDEAATVFTAMLDASRSEEKKIKTASSVPLSENSIYAEVIKSEKGRNMTLDYVISVLVG 344
Query: 658 MGCHPTTIG-TKASYSVDVKSIIEIARKEEVESLISKRYGKDACRMFKLLWKNGELMETD 482
+ P + SYS+D K IE+A+ + ES++ K+YGKDA RMF+LL K G L+ETD
Sbjct: 345 LSSSPPFVRVVDNSYSIDFKHTIEVAQTD--ESIVYKKYGKDAYRMFRLLSKAGRLLETD 402
Query: 481 KISDTAFVNKNEALKSLSNLGKDGYLQMEKPVSQGAQSQFLLWKVNKSSLREHVFDEMCH 302
KISD+ F+ K E LS + + YLQMEK ++ +QFLLWKVN +LRE V D+M H
Sbjct: 403 KISDSIFLEKKETANILSKMWQGDYLQMEKLIA--GPTQFLLWKVNMINLRERVLDDMFH 460
Query: 301 AALNLRLRLAYELEQEHEILQLPKHKRIGAEG---KRYERIRDVNILLESSLMKLDEALM 131
AALNL LR+AYELEQ+ EIL L G +G ++YE+++ V LLESS MKLD+A+M
Sbjct: 461 AALNLSLRVAYELEQQKEILHL------GVDGPMKEKYEKLKKVRFLLESSRMKLDDAIM 514
Query: 130 LFHDY 116
+FHD+
Sbjct: 515 IFHDF 519
>ref|XP_003535613.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC3-like [Glycine
max]
Length = 510
Score = 296 bits (757), Expect = 9e-78
Identities = 177/362 (48%), Positives = 235/362 (64%), Gaps = 7/362 (1%)
Frame = -3
Query: 1180 EPSVRLQDGDNSTRKRGAKSAS-FVRTKTLEQQVITAAV--SLKRFDFTMNTGADVISEA 1010
EP V + +TRKRGAKSA F +TLEQ+V+ AAV + RF +T V E
Sbjct: 162 EPVVSTSFKETTTRKRGAKSAKIFEAPETLEQRVVDAAVPGDVIRFSLAADTRCSVDRET 221
Query: 1009 NALRKPANVTVGEKRKVEALEMDDGTIDEKDILWRANFEEFICHLKQKACIASVRSRLDD 830
N+ + + +++ E ILWRANFEEFI HL+ K I +VR++ DD
Sbjct: 222 NS------------DDAQMISVEEEVAKEGQILWRANFEEFIRHLRHKVLIENVRTQHDD 269
Query: 829 EVGVTLNAVLDATRGPEKKVKVENSVPLSLDAIFEEVIKSDEGRCMTKERVDLALSQMGC 650
L+AVL+ATR +KKVK ENSVPLSLD I EV+K+D GR MT +R+ +L Q+GC
Sbjct: 270 GTATVLSAVLEATRSVQKKVKTENSVPLSLDTIITEVMKTDTGRTMTVDRIRASLVQLGC 329
Query: 649 HPTTIGTKASYSVDVKSIIEIARKEEVESLISKRYGKDACRMFKLLWKNGELMETDKISD 470
P+ I + SYS+D+K IIE AR EEVES++ KRYG D R+F+LL K+ +TD+I+
Sbjct: 330 SPSMI-LEESYSIDLKKIIEPARNEEVESIVLKRYGTDGYRIFRLLAKDCCFHDTDQIAA 388
Query: 469 TAFVNKNEALKSLSNLGKDGYLQMEK-PVSQGA-QSQFLLWKVNKSSLREHVFDEMCHAA 296
+ V K EA K L L KD YL MEK + GA Q+ L+WKVNK L E+V DEM HAA
Sbjct: 389 STLVEKKEASKLLYKLWKDNYLYMEKVGATVGAKQTTILMWKVNKPLLWEYVLDEMYHAA 448
Query: 295 LNLRLRLAYELEQEHEILQLPKHKRIGAE--GKRYERIRDVNILLESSLMKLDEALMLFH 122
LNL LR+A+E E++ E+L++PK KR G K+Y+++ +V +LL SSLMKLD+ALMLFH
Sbjct: 449 LNLSLRMAFEQEKDEELLKVPKDKRQGPGPLQKKYKKLLNVWLLLGSSLMKLDDALMLFH 508
Query: 121 DY 116
D+
Sbjct: 509 DF 510