BLASTX nr result
ID: Coptis21_contig00017740
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis21_contig00017740
(2107 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003631455.1| PREDICTED: pentatricopeptide repeat-containi... 468 e-129
emb|CBI25851.3| unnamed protein product [Vitis vinifera] 468 e-129
ref|XP_002531466.1| pentatricopeptide repeat-containing protein,... 445 e-122
ref|XP_004139002.1| PREDICTED: pentatricopeptide repeat-containi... 423 e-115
ref|XP_002326464.1| predicted protein [Populus trichocarpa] gi|2... 422 e-115
>ref|XP_003631455.1| PREDICTED: pentatricopeptide repeat-containing protein At5g47360-like
[Vitis vinifera]
Length = 638
Score = 468 bits (1204), Expect = e-129
Identities = 244/466 (52%), Positives = 322/466 (69%), Gaps = 6/466 (1%)
Frame = +2
Query: 5 NSICRHFPLNYRLNISINRSFSTS-SIHETNYLKLLQTNYNLEKTLTKNRGELNSSIVED 181
+S+ R P + R N +FST+ S E Y L + N+EKTL R +L+SS V +
Sbjct: 4 SSVSRLLPYSIRHK---NPNFSTALSSAEKYYTHLQKYGDNIEKTLPAVRAKLDSSCVNE 60
Query: 182 VLRKCSSDKPILGLRFFIWAGLQSDYRHGKYIYNKACNFFEIER----ISDVLEIYRKEG 349
VL +CS + LGLRFFIWAG+QS YRH Y+Y+KAC F I + I DV+E YR EG
Sbjct: 61 VLNRCSLTQSQLGLRFFIWAGVQSYYRHSSYLYSKACELFRINQNPRAIIDVIEAYRVEG 120
Query: 350 CLVCVKMFKVILNLCREAKLANEALGVFRKMREFGCRPDTTSFNIVIRMFCEKGDMDVVL 529
+V VK F V+L+L REAKLA+EAL + +KM EF R DT ++N VIR+FCEKGDMD+
Sbjct: 121 TVVSVKTFNVVLHLLREAKLADEALWILKKMAEFNIRADTVAYNSVIRLFCEKGDMDLAA 180
Query: 530 VLMKEMALMGIYPDVITYIVSIKGFCEVGRLEDACELVKVMRDQGCVPNVVAYSALLDGF 709
LMKEM L+ +YP++ITY+ IKGFC VGRLEDAC+L KVM+ GC PNVV Y+ +LDG
Sbjct: 181 GLMKEMGLIDLYPNMITYVTMIKGFCNVGRLEDACKLFKVMKGHGCSPNVVVYTVILDGV 240
Query: 710 CKIGDFDKAXXXXXXXXXXXXXX-PNVVTYTSLIQNFCDNGRTVEALGVLDRMGSRGCFP 886
C+ G ++A PNVVTYTS+IQ+ C+ G+ +EAL +LDRM + GC P
Sbjct: 241 CRFGSLERALELLGEMEKESGDCSPNVVTYTSMIQSCCEKGKLMEALEILDRMRACGCAP 300
Query: 887 NRVAISTLINRLCSDDNIEEAHKLIVKVVANGSVSRNECYSCLVVSLLRNKNMNEANELF 1066
NRV +S L+ C++ +EEA KLI KVVA G+VS ECYS L+VSL+ NKN+ EA +LF
Sbjct: 301 NRVTVSILMKGFCAEGRVEEAFKLIDKVVAGGNVSYGECYSSLIVSLVGNKNLQEAEKLF 360
Query: 1067 RWMLKNQIKPDGLASSILIKQLCLDGQILEGFEYYDEMEKIDCLPSIDSNIYSILLVGLC 1246
R ML N +KPDGLA LIK LCL+G++L+GF +DE E ++ L +DS+IYSILLVGL
Sbjct: 361 RRMLANAVKPDGLACGTLIKALCLEGRVLDGFHLFDEFENMEGLSYLDSDIYSILLVGLS 420
Query: 1247 QHGYSVEAVRLINAMVKRKIKVKASYTDSLIKSLQNSGEKELALHL 1384
Q +SVEAV+L MV R I++K Y DS+++ L+ SG+KE+ ++L
Sbjct: 421 QKRHSVEAVKLARLMVDRGIQLKTPYFDSIVEHLKESGDKEIVMYL 466
>emb|CBI25851.3| unnamed protein product [Vitis vinifera]
Length = 528
Score = 468 bits (1204), Expect = e-129
Identities = 244/472 (51%), Positives = 323/472 (68%), Gaps = 6/472 (1%)
Frame = +2
Query: 5 NSICRHFPLNYRLNISINRSFSTS-SIHETNYLKLLQTNYNLEKTLTKNRGELNSSIVED 181
+S+ R P + R N +FST+ S E Y L + N+EKTL R +L+SS V +
Sbjct: 10 SSVSRLLPYSIRHK---NPNFSTALSSAEKYYTHLQKYGDNIEKTLPAVRAKLDSSCVNE 66
Query: 182 VLRKCSSDKPILGLRFFIWAGLQSDYRHGKYIYNKACNFFEIER----ISDVLEIYRKEG 349
VL +CS + LGLRFFIWAG+QS YRH Y+Y+KAC F I + I DV+E YR EG
Sbjct: 67 VLNRCSLTQSQLGLRFFIWAGVQSYYRHSSYLYSKACELFRINQNPRAIIDVIEAYRVEG 126
Query: 350 CLVCVKMFKVILNLCREAKLANEALGVFRKMREFGCRPDTTSFNIVIRMFCEKGDMDVVL 529
+V VK F V+L+L REAKLA+EAL + +KM EF R DT ++N VIR+FCEKGDMD+
Sbjct: 127 TVVSVKTFNVVLHLLREAKLADEALWILKKMAEFNIRADTVAYNSVIRLFCEKGDMDLAA 186
Query: 530 VLMKEMALMGIYPDVITYIVSIKGFCEVGRLEDACELVKVMRDQGCVPNVVAYSALLDGF 709
LMKEM L+ +YP++ITY+ IKGFC VGRLEDAC+L KVM+ GC PNVV Y+ +LDG
Sbjct: 187 GLMKEMGLIDLYPNMITYVTMIKGFCNVGRLEDACKLFKVMKGHGCSPNVVVYTVILDGV 246
Query: 710 CKIGDFDKAXXXXXXXXXXXXXX-PNVVTYTSLIQNFCDNGRTVEALGVLDRMGSRGCFP 886
C+ G ++A PNVVTYTS+IQ+ C+ G+ +EAL +LDRM + GC P
Sbjct: 247 CRFGSLERALELLGEMEKESGDCSPNVVTYTSMIQSCCEKGKLMEALEILDRMRACGCAP 306
Query: 887 NRVAISTLINRLCSDDNIEEAHKLIVKVVANGSVSRNECYSCLVVSLLRNKNMNEANELF 1066
NRV +S L+ C++ +EEA KLI KVVA G+VS ECYS L+VSL+ NKN+ EA +LF
Sbjct: 307 NRVTVSILMKGFCAEGRVEEAFKLIDKVVAGGNVSYGECYSSLIVSLVGNKNLQEAEKLF 366
Query: 1067 RWMLKNQIKPDGLASSILIKQLCLDGQILEGFEYYDEMEKIDCLPSIDSNIYSILLVGLC 1246
R ML N +KPDGLA LIK LCL+G++L+GF +DE E ++ L +DS+IYSILLVGL
Sbjct: 367 RRMLANAVKPDGLACGTLIKALCLEGRVLDGFHLFDEFENMEGLSYLDSDIYSILLVGLS 426
Query: 1247 QHGYSVEAVRLINAMVKRKIKVKASYTDSLIKSLQNSGEKELALHLKSAGIM 1402
Q +SVEAV+L MV R I++K Y DS+++ L+ SG+KE+ H + ++
Sbjct: 427 QKRHSVEAVKLARLMVDRGIQLKTPYFDSIVEHLKESGDKEICTHFCTLALL 478
>ref|XP_002531466.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223528920|gb|EEF30916.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 518
Score = 445 bits (1144), Expect = e-122
Identities = 218/447 (48%), Positives = 309/447 (69%), Gaps = 5/447 (1%)
Frame = +2
Query: 71 TSSIHETNYLKLLQTNYNLEKTLTKNRGELNSSIVEDVLRKCSSDKPILGLRFFIWAGLQ 250
T+S+ + Y L N+EK+L + +L++ V +VL KCS + +GLRFF+WAG Q
Sbjct: 27 TTSLADKLYTHLQNNPNNVEKSLNSIKPKLDTRCVTEVLHKCSLNNSQIGLRFFVWAGYQ 86
Query: 251 SDYRHGKYIYNKACNFFEIER----ISDVLEIYRKEGCLVCVKMFKVILNLCREAKLANE 418
S+YRH ++Y+KAC F I++ + D+ E YR E C+V +K FKV+LNLC+E LANE
Sbjct: 87 SNYRHSSFLYSKACKLFNIKQNPQAVLDLFEFYRAEKCVVNLKTFKVVLNLCKEGTLANE 146
Query: 419 ALGVFRKMREFGCRPDTTSFNIVIRMFCEKGDMDVVLVLMKEMALMGIYPDVITYIVSIK 598
A V RKM+EF + DT ++ IVIR+FC+KGDMD+ LM EM+ +YPD++TY+ IK
Sbjct: 147 AFLVLRKMQEFDIQADTKAYTIVIRLFCDKGDMDMAQKLMGEMSFNDLYPDMVTYVSIIK 206
Query: 599 GFCEVGRLEDACELVKVMRDQGCVPNVVAYSALLDGFCKIGDFDKAXXXXXXXXXXXXXX 778
GFC++GRLE+AC LVK MR GCVPNVV YS L+DG C+ G ++A
Sbjct: 207 GFCDIGRLEEACRLVKEMRAHGCVPNVVVYSTLVDGICRFGSVERALELLGGMEKEGGDC 266
Query: 779 -PNVVTYTSLIQNFCDNGRTVEALGVLDRMGSRGCFPNRVAISTLINRLCSDDNIEEAHK 955
PNV+TYTS+IQ C+ GRT++A VLDRM + GC PNRV +STL+ RLC D ++EEA+K
Sbjct: 267 NPNVLTYTSVIQGLCEKGRTMDAFAVLDRMEACGCAPNRVTVSTLLKRLCMDGHLEEAYK 326
Query: 956 LIVKVVANGSVSRNECYSCLVVSLLRNKNMNEANELFRWMLKNQIKPDGLASSILIKQLC 1135
LI +VVA GSVS +CYS +VV L+R K + EA +LFR + + +KPDGLA S++IK+LC
Sbjct: 327 LIDRVVAGGSVSSCDCYSPIVVCLIRIKKVEEAEKLFRRAVVSGVKPDGLACSLMIKELC 386
Query: 1136 LDGQILEGFEYYDEMEKIDCLPSIDSNIYSILLVGLCQHGYSVEAVRLINAMVKRKIKVK 1315
++L+G+ +DE+EKI L +IDS+ YS+LLVGLCQ GYS+EA +L ++++++I +K
Sbjct: 387 FVNRVLDGYCLHDEIEKIGSLSTIDSDTYSVLLVGLCQQGYSLEAAKLARSLIEKRIHLK 446
Query: 1316 ASYTDSLIKSLQNSGEKELALHLKSAG 1396
Y D +++ ++ G +L L S G
Sbjct: 447 HPYVDKVVEYMKKFGVTDLVTELASIG 473
>ref|XP_004139002.1| PREDICTED: pentatricopeptide repeat-containing protein At5g47360-like
[Cucumis sativus] gi|449505643|ref|XP_004162530.1|
PREDICTED: pentatricopeptide repeat-containing protein
At5g47360-like [Cucumis sativus]
Length = 475
Score = 423 bits (1087), Expect = e-115
Identities = 218/458 (47%), Positives = 313/458 (68%), Gaps = 7/458 (1%)
Frame = +2
Query: 32 NYRLNISINRSFSTSSIHETN--YLKLLQTNYNLEKTLTKNRGELNSSIVEDVLRKCSSD 205
++ LNIS +F +++ ++ Y L ++N NL+KTL + +L+S V +VL KCS +
Sbjct: 13 SFLLNISTLSTFHLNTLSSSDLFYDHLEKSNGNLDKTLATLKTKLDSRCVNEVLYKCSFE 72
Query: 206 KPILGLRFFIWAGLQSDYRHGKYIYNKACNFFEIE----RISDVLEIYRKEGCLVCVKMF 373
+GLRFFIWAG Q +YRH ++Y++AC I + +V+E YR+EGCLV ++MF
Sbjct: 73 LSQMGLRFFIWAGRQPNYRHSSFMYSRACELIGINVSPCLLFNVIEDYRREGCLVDIRMF 132
Query: 374 KVILNLCREAKLANEALGVFRKMREFGCRPDTTSFNIVIRMFCEKGDMDVVLVLMKEMAL 553
K+ILNLC+EAKLA EAL + RKM EF R DTT +N+VIR+F EKG+MD + LMKEM
Sbjct: 133 KIILNLCKEAKLAKEALSILRKMSEFHLRADTTMYNLVIRLFTEKGEMDKAMELMKEMDS 192
Query: 554 MGIYPDVITYIVSIKGFCEVGRLEDACELVKVMRDQGCVPNVVAYSALLDGFCKIGDFDK 733
+ I+P++ITYI +KGFC+VGR EDA L K M++ GC PN V YS L++G ++ D+
Sbjct: 193 VDIHPNMITYISMLKGFCDVGRWEDAYGLFKDMKENGCAPNTVVYSVLVNGAIRLRIMDR 252
Query: 734 AXXXXXXXXXXXXXX-PNVVTYTSLIQNFCDNGRTVEALGVLDRMGSRGCFPNRVAISTL 910
PN VTYTS+IQ+ C+ G +EAL VLDRM G PNRVA+S L
Sbjct: 253 LMEMLKEMEKQGGTCSPNTVTYTSIIQSLCEEGHPLEALKVLDRMEEYGYAPNRVAVSFL 312
Query: 911 INRLCSDDNIEEAHKLIVKVVANGSVSRNECYSCLVVSLLRNKNMNEANELFRWMLKNQI 1090
+ C D ++EEA+KLI +VVA G VS +CYS LVV+L++ K + EA +LFR ML N +
Sbjct: 313 VKEFCKDGHVEEAYKLIDRVVARGGVSYGDCYSSLVVTLVKMKKIAEAEKLFRNMLANGV 372
Query: 1091 KPDGLASSILIKQLCLDGQILEGFEYYDEMEKIDCLPSIDSNIYSILLVGLCQHGYSVEA 1270
KPDG+A S++I++LCL+ ++L+GF E+++ L SID++IYS+LLVGLC+H +SV+A
Sbjct: 373 KPDGVACSLMIRELCLEERVLDGFNLCYEVDRNGYLCSIDADIYSLLLVGLCEHDHSVDA 432
Query: 1271 VRLINAMVKRKIKVKASYTDSLIKSLQNSGEKELALHL 1384
+L M+K+ I++K Y +S+IK L+ ++EL +HL
Sbjct: 433 AKLARLMLKKGIRLKPHYAESIIKHLKKFEDRELVMHL 470
>ref|XP_002326464.1| predicted protein [Populus trichocarpa] gi|222833786|gb|EEE72263.1|
predicted protein [Populus trichocarpa]
Length = 476
Score = 422 bits (1086), Expect = e-115
Identities = 220/469 (46%), Positives = 310/469 (66%), Gaps = 8/469 (1%)
Frame = +2
Query: 8 SICRHFPLNYRLNIS--INRSFSTSSIHETNYLKLLQTNYNLEKTLTKNRG-ELNSSIVE 178
S+ RHF + + F+T+S+ E L + N+EKTL +L++ V
Sbjct: 5 SLTRHFTFSIKPKTPKISTLHFATTSLGEKLDAHLQNSPNNVEKTLNSLAPIKLDTKYVN 64
Query: 179 DVLRKCSSDKPILGLRFFIWAGLQSDYRHGKYIYNKACNFFEIER----ISDVLEIYRKE 346
D++ + S + LGLRFFIWAG Q +YRH YIYNKAC+ F+I++ I D++E Y+ E
Sbjct: 65 DIIHRWSLNNLQLGLRFFIWAGDQPNYRHNLYIYNKACSLFKIKQNPQVILDLIETYKLE 124
Query: 347 GCLVCVKMFKVILNLCREAKLANEALGVFRKMREFGCRPDTTSFNIVIRMFCEKGDMDVV 526
C+VCV FKV+L LC+ LA+EAL V +KM EF RPDTT++N+VIR CEKGD+D+
Sbjct: 125 KCVVCVDTFKVVLRLCKAGGLADEALMVLKKMPEFNIRPDTTAYNVVIRSLCEKGDVDMA 184
Query: 527 LVLMKEMALMGIYPDVITYIVSIKGFCEVGRLEDACELVKVMRDQGCVPNVVAYSALLDG 706
LM EM L+ +YPD+ITY+ IKGFC+VGRLE+A L VM GC PNVVAYSALLDG
Sbjct: 185 KKLMGEMGLIDLYPDMITYVSMIKGFCDVGRLEEAFALFPVMSVHGCYPNVVAYSALLDG 244
Query: 707 FCKIGDFDKAXXXXXXXXXXXXXX-PNVVTYTSLIQNFCDNGRTVEALGVLDRMGSRGCF 883
C+ G ++A PNV+TYTS+IQ+FC+ GRT +AL VL+ M RGC
Sbjct: 245 ICRFGIVERAFELLAEMEKQGEGCCPNVITYTSVIQSFCEQGRTKDALSVLELMEVRGCA 304
Query: 884 PNRVAISTLINRLCSDDNIEEAHKLIVKVVANGSVSRNECYSCLVVSLLRNKNMNEANEL 1063
PNRV S IN +C++ +++ + I ++VA GSVS +CYS LVV L++ K + EA +
Sbjct: 305 PNRVTASAWINGICTNGQLQDVYNFIERIVAGGSVSIGDCYSSLVVCLIKIKKVEEAEKT 364
Query: 1064 FRWMLKNQIKPDGLASSILIKQLCLDGQILEGFEYYDEMEKIDCLPSIDSNIYSILLVGL 1243
FR L + +KPD LA S++I+++C + ++L+GF Y+E+EK CL SID +IYSILL GL
Sbjct: 365 FRRALSSGMKPDSLACSMMIREICSEKRVLDGFCLYEEVEKTGCLSSIDIDIYSILLAGL 424
Query: 1244 CQHGYSVEAVRLINAMVKRKIKVKASYTDSLIKSLQNSGEKELALHLKS 1390
CQ G+S EA RL +M++++I ++A + + +++ L+N G KEL L S
Sbjct: 425 CQQGHSAEAARLARSMLEKRIPLRAPHVEKIVEHLKNFGGKELVAELVS 473