BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00017633
         (376 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002306730.1| predicted protein [Populus trichocarpa] gi|2...   138   5e-31
ref|XP_002527112.1| pentatricopeptide repeat-containing protein,...   135   5e-30
ref|XP_002891080.1| pentatricopeptide repeat-containing protein ...   123   1e-26
ref|XP_004159440.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   120   1e-25
ref|XP_004140941.1| PREDICTED: pentatricopeptide repeat-containi...   120   1e-25

>ref|XP_002306730.1| predicted protein [Populus trichocarpa] gi|222856179|gb|EEE93726.1|
           predicted protein [Populus trichocarpa]
          Length = 578

 Score =  138 bits (347), Expect = 5e-31
 Identities = 71/124 (57%), Positives = 89/124 (71%), Gaps = 1/124 (0%)
 Frame = -3

Query: 371 PKQAFKYYKSSFYSNRP-DALTCSFVLKACARILAIFEARQIHCHVIRFGFEXXXXXXXX 195
           P  AF +YKS    +R  DALTCSFVLKACAR+LA  E+ QIH H++R GF         
Sbjct: 86  PTNAFAWYKSMISKSRKVDALTCSFVLKACARVLARLESIQIHTHIVRKGFIADALLGTT 145

Query: 194 XXDVYAKVGDLDNAERLFDEMGVRDVATWNALISGLAQGSRARDALDLFKRMGFEGLKRN 15
             DVYAKVG++D+AE++FDEM  RD+A+WNALISG AQGS+  +AL LFKRM  +G K N
Sbjct: 146 LLDVYAKVGEIDSAEKVFDEMVKRDIASWNALISGFAQGSKPTEALSLFKRMEIDGFKPN 205

Query: 14  EVTV 3
           E++V
Sbjct: 206 EISV 209



 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 2/125 (1%)
 Frame = -3

Query: 374 EPKQAFKYYKSSFYSN-RPDALTCSFVLKACARILAIFEARQIHCHVIRFGFEXXXXXXX 198
           +P +A   +K       +P+ ++    L ACA++    E  +IH ++    F+       
Sbjct: 186 KPTEALSLFKRMEIDGFKPNEISVLGALSACAQLGDFKEGEKIHGYIKVERFDMNAQVCN 245

Query: 197 XXXDVYAKVGDLDNAERLFDEMGVR-DVATWNALISGLAQGSRARDALDLFKRMGFEGLK 21
              D+YAK G +D A  +F+ M  R D+ TWN +I   A       AL+LF++M   G+ 
Sbjct: 246 VVIDMYAKCGFVDKAYLVFESMSCRKDIVTWNTMIMAFAMHGEGCKALELFEKMDQSGVS 305

Query: 20  RNEVT 6
            ++V+
Sbjct: 306 PDDVS 310


>ref|XP_002527112.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223533535|gb|EEF35275.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 364

 Score =  135 bits (339), Expect = 5e-30
 Identities = 68/125 (54%), Positives = 90/125 (72%), Gaps = 1/125 (0%)
 Frame = -3

Query: 374 EPKQAFKYYKSSFY-SNRPDALTCSFVLKACARILAIFEARQIHCHVIRFGFEXXXXXXX 198
           +P  +FK+YK+    S + DALTCSFVLKACAR+LA  E+ Q+H H++R GF        
Sbjct: 83  DPIDSFKWYKTMIRGSYKVDALTCSFVLKACARVLAFSESTQLHSHIVRKGFVADALLGT 142

Query: 197 XXXDVYAKVGDLDNAERLFDEMGVRDVATWNALISGLAQGSRARDALDLFKRMGFEGLKR 18
              D+YAK GDLD+A+++FDEM V+D+A+WNALISG AQG++  +AL LFKRM   G K 
Sbjct: 143 TLLDLYAKTGDLDSAQKMFDEMIVKDIASWNALISGFAQGNKPSEALGLFKRMEVLGFKP 202

Query: 17  NEVTV 3
           NE+TV
Sbjct: 203 NEITV 207


>ref|XP_002891080.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297336922|gb|EFH67339.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 562

 Score =  123 bits (309), Expect = 1e-26
 Identities = 67/129 (51%), Positives = 83/129 (64%), Gaps = 6/129 (4%)
 Frame = -3

Query: 371 PKQAFKYYKSSFYSN------RPDALTCSFVLKACARILAIFEARQIHCHVIRFGFEXXX 210
           P  AF +Y+S    +      R DALTCSF LKACAR L      QIHC + R GF    
Sbjct: 84  PSLAFSWYRSMLQRSSSSALCRVDALTCSFTLKACARALCSSAMVQIHCQISRRGFSADA 143

Query: 209 XXXXXXXDVYAKVGDLDNAERLFDEMGVRDVATWNALISGLAQGSRARDALDLFKRMGFE 30
                  D Y+K GDL +A +LFDEM VRDVA+WNALI+GL  G+RA +AL+L+KRM  E
Sbjct: 144 LLCTTLLDAYSKNGDLISALKLFDEMSVRDVASWNALIAGLVAGNRASEALELYKRMEME 203

Query: 29  GLKRNEVTV 3
           G++R+EVTV
Sbjct: 204 GIRRSEVTV 212


>ref|XP_004159440.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g34160-like [Cucumis sativus]
          Length = 576

 Score =  120 bits (301), Expect = 1e-25
 Identities = 68/128 (53%), Positives = 84/128 (65%), Gaps = 4/128 (3%)
 Frame = -3

Query: 374 EPKQAFKYYKSSFYSN---RPDALTCSFVLKACARILAIFEARQIHCHVIRFGFEXXXXX 204
           +P  A  +Y++   SN   R DALTCSF LKACAR LA  EA Q+H  ++RFGF      
Sbjct: 81  DPANAVFWYRAMAASNGLHRIDALTCSFALKACARALARSEAIQLHSQLLRFGFNADVLL 140

Query: 203 XXXXXDVYAKVGDLDNAERLFDEMGVRDVATWNALISGLAQGSRARDALDLFKRMGFEG- 27
                D YAK+GDLD A++LFDEM   D+A+WNALI+G AQGSR  DA+  FKRM  +G 
Sbjct: 141 QTTLLDAYAKIGDLDLAQKLFDEMPQPDIASWNALIAGFAQGSRPADAIMTFKRMKVDGN 200

Query: 26  LKRNEVTV 3
           L+ N VTV
Sbjct: 201 LRPNAVTV 208



 Score = 59.7 bits (143), Expect = 2e-07
 Identities = 32/108 (29%), Positives = 56/108 (51%), Gaps = 1/108 (0%)
 Frame = -3

Query: 326 RPDALTCSFVLKACARILAIFEARQIHCHVIRFGFEXXXXXXXXXXDVYAKVGDLDNAER 147
           RP+A+T    L AC+++ A+ E   +H +++    +          D+YAK G +D A  
Sbjct: 202 RPNAVTVQGALLACSQLGALKEGESVHKYIVEEKLDSNVQVCNVVIDMYAKCGSMDKAYW 261

Query: 146 LFDEMGV-RDVATWNALISGLAQGSRARDALDLFKRMGFEGLKRNEVT 6
           +F+ M   + + TWN +I   A       ALDLF+++G  G+  + V+
Sbjct: 262 VFENMRCDKSLITWNTMIMAFAMHGDGHKALDLFEKLGRSGMSPDAVS 309


>ref|XP_004140941.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g34160-like [Cucumis sativus]
          Length = 576

 Score =  120 bits (301), Expect = 1e-25
 Identities = 68/128 (53%), Positives = 84/128 (65%), Gaps = 4/128 (3%)
 Frame = -3

Query: 374 EPKQAFKYYKSSFYSN---RPDALTCSFVLKACARILAIFEARQIHCHVIRFGFEXXXXX 204
           +P  A  +Y++   SN   R DALTCSF LKACAR LA  EA Q+H  ++RFGF      
Sbjct: 81  DPANAVFWYRAMAASNGLHRIDALTCSFALKACARALARSEAIQLHSQLLRFGFNADVLL 140

Query: 203 XXXXXDVYAKVGDLDNAERLFDEMGVRDVATWNALISGLAQGSRARDALDLFKRMGFEG- 27
                D YAK+GDLD A++LFDEM   D+A+WNALI+G AQGSR  DA+  FKRM  +G 
Sbjct: 141 QTTLLDAYAKIGDLDLAQKLFDEMPQPDIASWNALIAGFAQGSRPADAIMTFKRMKVDGN 200

Query: 26  LKRNEVTV 3
           L+ N VTV
Sbjct: 201 LRPNAVTV 208



 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 32/108 (29%), Positives = 55/108 (50%), Gaps = 1/108 (0%)
 Frame = -3

Query: 326 RPDALTCSFVLKACARILAIFEARQIHCHVIRFGFEXXXXXXXXXXDVYAKVGDLDNAER 147
           RP+A+T    L AC+++ A+ E   +H +++               D+YAK G +D A  
Sbjct: 202 RPNAVTVQGALLACSQLGALKEGESVHKYIVEEKLNSNVQVCNVVIDMYAKCGSMDKAYW 261

Query: 146 LFDEMGV-RDVATWNALISGLAQGSRARDALDLFKRMGFEGLKRNEVT 6
           +F+ M   + + TWN +I   A       ALDLF+++G  G+  + V+
Sbjct: 262 VFENMRCDKSLITWNTMIMAFAMHGDGHKALDLFEKLGRSGMSPDAVS 309