BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00017632
         (339 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002282301.1| PREDICTED: pentatricopeptide repeat-containi...   152   2e-35
ref|XP_002530052.1| pentatricopeptide repeat-containing protein,...   134   8e-30
ref|XP_004135492.1| PREDICTED: pentatricopeptide repeat-containi...   129   3e-28
ref|XP_003531326.1| PREDICTED: pentatricopeptide repeat-containi...   126   2e-27
dbj|BAK04970.1| predicted protein [Hordeum vulgare subsp. vulgare]    125   5e-27

>ref|XP_002282301.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
           mitochondrial [Vitis vinifera]
           gi|296081374|emb|CBI16807.3| unnamed protein product
           [Vitis vinifera]
          Length = 519

 Score =  152 bits (385), Expect = 2e-35
 Identities = 71/111 (63%), Positives = 89/111 (80%)
 Frame = +2

Query: 2   RLDTAIEVLQTMYRKGSEPDVVTYTTIIDGFCKFGRYKSAVEIWHEMVGRGFSPDVVACG 181
           +LD A+ V+QTM  KG EPD+VTYT +I+G C+ GR+ SAVEIW  MV +GFSPD  AC 
Sbjct: 129 QLDVALGVVQTMVEKGREPDIVTYTIVINGLCRAGRFDSAVEIWRNMVRKGFSPDEKACR 188

Query: 182 ALVFGLCERGKVDLAYELTLGMMKYQVEFSISVYNALISGFCQAGRVDKAQ 334
           ALV GLC  GKVDLAYELT+G M+ +++FS S+YN+LI+GFCQAG +DKAQ
Sbjct: 189 ALVLGLCHDGKVDLAYELTVGAMRGRIKFSKSIYNSLINGFCQAGWIDKAQ 239



 Score = 71.2 bits (173), Expect = 8e-11
 Identities = 38/106 (35%), Positives = 60/106 (56%)
 Frame = +2

Query: 14  AIEVLQTMYRKGSEPDVVTYTTIIDGFCKFGRYKSAVEIWHEMVGRGFSPDVVACGALVF 193
           A ++ + M  KG  PDVVT+T +I  F + G    A ++  +M G G  PD V    +V 
Sbjct: 343 AYKLFEEMGGKGITPDVVTFTILIKAFLREGSSNIAKKLLDQMTGLGLLPDRVLYTTIVD 402

Query: 194 GLCERGKVDLAYELTLGMMKYQVEFSISVYNALISGFCQAGRVDKA 331
            LC+ GK+ +A+ +   M++  +   +  YNALI+G C+A RV +A
Sbjct: 403 HLCKTGKMGMAHSVFCDMVESGITPDVVSYNALINGLCRASRVSEA 448



 Score = 62.4 bits (150), Expect = 4e-08
 Identities = 32/109 (29%), Positives = 54/109 (49%)
 Frame = +2

Query: 5   LDTAIEVLQTMYRKGSEPDVVTYTTIIDGFCKFGRYKSAVEIWHEMVGRGFSPDVVACGA 184
           +D A  ++  M R G EPD+VTY  +++  C     + A  +  +M   G  PDV +   
Sbjct: 235 IDKAQSIISFMRRNGCEPDLVTYNVLLNYCCDELLLEEAENLMKKMERSGVEPDVYSYNE 294

Query: 185 LVFGLCERGKVDLAYELTLGMMKYQVEFSISVYNALISGFCQAGRVDKA 331
           L+ GLC+  ++D AY + +  M+ +    +  YN +I   C A    +A
Sbjct: 295 LLKGLCKANRLDKAYMMMVNKMEAKGLCDVVSYNTIIKALCTASHTKRA 343



 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 31/74 (41%), Positives = 42/74 (56%)
 Frame = +2

Query: 14  AIEVLQTMYRKGSEPDVVTYTTIIDGFCKFGRYKSAVEIWHEMVGRGFSPDVVACGALVF 193
           A ++L  M   G  PD V YTTI+D  CK G+   A  ++ +MV  G +PDVV+  AL+ 
Sbjct: 378 AKKLLDQMTGLGLLPDRVLYTTIVDHLCKTGKMGMAHSVFCDMVESGITPDVVSYNALIN 437

Query: 194 GLCERGKVDLAYEL 235
           GLC   +V  A  L
Sbjct: 438 GLCRASRVSEAMHL 451


>ref|XP_002530052.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223530468|gb|EEF32352.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 554

 Score =  134 bits (337), Expect = 8e-30
 Identities = 63/112 (56%), Positives = 85/112 (75%), Gaps = 1/112 (0%)
 Frame = +2

Query: 2   RLDTAIEVLQTMYRKGSEPDVVTYTTIIDGFCKFGRYKSAVEIWHEMVGRGFSPDVVACG 181
           R+D A+EV + + + G +PDVVTYT II G CK  ++ +A++ W +M+ +GFSPD  ACG
Sbjct: 129 RIDLALEVFEKIVKNGRKPDVVTYTIIIHGVCKIKKFDTAIQFWRDMIHKGFSPDNKACG 188

Query: 182 ALVFGLCERGKVDLAYELTLGMMKY-QVEFSISVYNALISGFCQAGRVDKAQ 334
           A+V GLC+  KVDLAYEL + +MK  +V+ S  VYNALISGFC+AGR+DKAQ
Sbjct: 189 AIVVGLCDGRKVDLAYELIIDVMKSGRVKLSTLVYNALISGFCRAGRIDKAQ 240



 Score = 74.3 bits (181), Expect = 9e-12
 Identities = 36/107 (33%), Positives = 62/107 (57%)
 Frame = +2

Query: 11  TAIEVLQTMYRKGSEPDVVTYTTIIDGFCKFGRYKSAVEIWHEMVGRGFSPDVVACGALV 190
           +A ++ + M +KG  PDVVT+T  I  F   G +  A ++  +M   G SPD +    ++
Sbjct: 343 SAYKLFEEMGQKGIPPDVVTFTIFIKAFLGKGSFNIAKKLLDQMTEMGLSPDCIFYTTII 402

Query: 191 FGLCERGKVDLAYELTLGMMKYQVEFSISVYNALISGFCQAGRVDKA 331
             LC+ GKV++A+ +   M++  +   +  +NALI+GFC+  RV +A
Sbjct: 403 DHLCKSGKVEMAHSIFCDMVEQGISPDVISFNALINGFCKCSRVSEA 449



 Score = 62.0 bits (149), Expect = 5e-08
 Identities = 36/106 (33%), Positives = 53/106 (50%)
 Frame = +2

Query: 14  AIEVLQTMYRKGSEPDVVTYTTIIDGFCKFGRYKSAVEIWHEMVGRGFSPDVVACGALVF 193
           A ++L  M   G  PD + YTTIID  CK G+ + A  I+ +MV +G SPDV++  AL+ 
Sbjct: 379 AKKLLDQMTEMGLSPDCIFYTTIIDHLCKSGKVEMAHSIFCDMVEQGISPDVISFNALIN 438

Query: 194 GLCERGKVDLAYELTLGMMKYQVEFSISVYNALISGFCQAGRVDKA 331
           G C+  +V  A  L   M           Y  +I G  +  ++  A
Sbjct: 439 GFCKCSRVSEAMHLYEEMQNRGSYPDEVTYKLIIGGLIEEKKISIA 484



 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 35/110 (31%), Positives = 50/110 (45%)
 Frame = +2

Query: 2   RLDTAIEVLQTMYRKGSEPDVVTYTTIIDGFCKFGRYKSAVEIWHEMVGRGFSPDVVACG 181
           R+D A  +   M R G EPD+VTY   ++ FC       A ++   M   G  PDV +  
Sbjct: 235 RIDKAQAIKSFMRRNGCEPDLVTYNVFLNYFCDELMLDDAKKLLKLMERSGIEPDVYSYN 294

Query: 182 ALVFGLCERGKVDLAYELTLGMMKYQVEFSISVYNALISGFCQAGRVDKA 331
            L+ G+C+    D AY L    M  +    +  YN +I  FC+ G    A
Sbjct: 295 QLLKGICKGNCPDKAYLLMTNKMWPKGLCDVVSYNTIIKAFCKIGDTTSA 344



 Score = 57.8 bits (138), Expect = 9e-07
 Identities = 30/100 (30%), Positives = 50/100 (50%)
 Frame = +2

Query: 2   RLDTAIEVLQTMYRKGSEPDVVTYTTIIDGFCKFGRYKSAVEIWHEMVGRGFSPDVVACG 181
           +++ A  +   M  +G  PDV+++  +I+GFCK  R   A+ ++ EM  RG  PD V   
Sbjct: 410 KVEMAHSIFCDMVEQGISPDVISFNALINGFCKCSRVSEAMHLYEEMQNRGSYPDEVTYK 469

Query: 182 ALVFGLCERGKVDLAYELTLGMMKYQVEFSISVYNALISG 301
            ++ GL E  K+ +A  +   MM        ++   LI G
Sbjct: 470 LIIGGLIEEKKISIACMVWGQMMDKGFTLDRAIAQTLIRG 509


>ref|XP_004135492.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
           mitochondrial-like [Cucumis sativus]
           gi|449494962|ref|XP_004159696.1| PREDICTED:
           pentatricopeptide repeat-containing protein At1g13040,
           mitochondrial-like [Cucumis sativus]
          Length = 514

 Score =  129 bits (323), Expect = 3e-28
 Identities = 60/109 (55%), Positives = 80/109 (73%)
 Frame = +2

Query: 5   LDTAIEVLQTMYRKGSEPDVVTYTTIIDGFCKFGRYKSAVEIWHEMVGRGFSPDVVACGA 184
           L+ A++    M  KG EPDVVTYT I+D  CK  +Y  AVE W  MV +G SPD+ AC A
Sbjct: 130 LELALKFFDEMVAKGREPDVVTYTIIVDRLCKAKQYDKAVEFWRCMVNKGLSPDMKACTA 189

Query: 185 LVFGLCERGKVDLAYELTLGMMKYQVEFSISVYNALISGFCQAGRVDKA 331
           LV GLC+ GKVDLAYELT+G MK +++F+  ++N+L+SGFC++GR+ KA
Sbjct: 190 LVVGLCDGGKVDLAYELTVGEMKGEMKFNNLIFNSLMSGFCKSGRISKA 238



 Score = 60.1 bits (144), Expect = 2e-07
 Identities = 29/68 (42%), Positives = 44/68 (64%)
 Frame = +2

Query: 23  VLQTMYRKGSEPDVVTYTTIIDGFCKFGRYKSAVEIWHEMVGRGFSPDVVACGALVFGLC 202
           +LQTM +    PD++ YTT++D FCK  + + A  ++ +M+  G SPDVV+  AL+ GLC
Sbjct: 380 LLQTMTQTVLIPDLIFYTTVVDYFCKTRKIEMAQGVFRDMIEIGISPDVVSYNALINGLC 439

Query: 203 ERGKVDLA 226
           +  KV  A
Sbjct: 440 KASKVSEA 447



 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 33/110 (30%), Positives = 58/110 (52%)
 Frame = +2

Query: 2   RLDTAIEVLQTMYRKGSEPDVVTYTTIIDGFCKFGRYKSAVEIWHEMVGRGFSPDVVACG 181
           R+  A+ +   M + G EPD++TY  +++ FC     + A +   +M   G  PDV +  
Sbjct: 234 RISKALAIKSFMSKHGCEPDLITYNILLNFFCDGLMLELAGKSMKKMERIGMEPDVYSYN 293

Query: 182 ALVFGLCERGKVDLAYELTLGMMKYQVEFSISVYNALISGFCQAGRVDKA 331
            L+ GLC+  ++D AY+L   M +  +  ++S YN +I   C++    KA
Sbjct: 294 QLLKGLCKANRLDKAYKLMNTMWEKGLCDTVS-YNTVIGALCKSFATRKA 342



 Score = 54.3 bits (129), Expect = 1e-05
 Identities = 31/110 (28%), Positives = 56/110 (50%)
 Frame = +2

Query: 2   RLDTAIEVLQTMYRKGSEPDVVTYTTIIDGFCKFGRYKSAVEIWHEMVGRGFSPDVVACG 181
           ++D A E+     +   + + + + +++ GFCK GR   A+ I   M   G  PD++   
Sbjct: 199 KVDLAYELTVGEMKGEMKFNNLIFNSLMSGFCKSGRISKALAIKSFMSKHGCEPDLITYN 258

Query: 182 ALVFGLCERGKVDLAYELTLGMMKYQVEFSISVYNALISGFCQAGRVDKA 331
            L+   C+   ++LA +    M +  +E  +  YN L+ G C+A R+DKA
Sbjct: 259 ILLNFFCDGLMLELAGKSMKKMERIGMEPDVYSYNQLLKGLCKANRLDKA 308


>ref|XP_003531326.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
           mitochondrial-like [Glycine max]
          Length = 521

 Score =  126 bits (316), Expect = 2e-27
 Identities = 59/110 (53%), Positives = 78/110 (70%)
 Frame = +2

Query: 2   RLDTAIEVLQTMYRKGSEPDVVTYTTIIDGFCKFGRYKSAVEIWHEMVGRGFSPDVVACG 181
           RL+TA+E+  +M  KG +PDVV+YT IID  C   R+  A ++W  ++ +G SPD  AC 
Sbjct: 134 RLETALELFHSMPSKGRDPDVVSYTIIIDALCNAKRFDEAAKVWRRLIDKGLSPDYKACV 193

Query: 182 ALVFGLCERGKVDLAYELTLGMMKYQVEFSISVYNALISGFCQAGRVDKA 331
           ALV GLC  G+VDLAYEL +G++K  V+ +  VYNALI GFC+ GRVDKA
Sbjct: 194 ALVVGLCSGGRVDLAYELVVGVIKGGVKVNSLVYNALIDGFCRMGRVDKA 243



 Score = 73.9 bits (180), Expect = 1e-11
 Identities = 41/112 (36%), Positives = 61/112 (54%)
 Frame = +2

Query: 2   RLDTAIEVLQTMYRKGSEPDVVTYTTIIDGFCKFGRYKSAVEIWHEMVGRGFSPDVVACG 181
           R+D A E++  + + G + + + Y  +IDGFC+ GR   A++I   M   G  PD+V   
Sbjct: 204 RVDLAYELVVGVIKGGVKVNSLVYNALIDGFCRMGRVDKAMKIKAFMSRTGCVPDLVTYN 263

Query: 182 ALVFGLCERGKVDLAYELTLGMMKYQVEFSISVYNALISGFCQAGRVDKAQV 337
            L+   CE G VD A  L   M +  VE  +  YN L+ GFC+A  VD+A +
Sbjct: 264 ILLNYCCEEGMVDEAVRLVETMERSGVEPDLYSYNELLKGFCKANMVDRAHL 315



 Score = 68.6 bits (166), Expect = 5e-10
 Identities = 36/101 (35%), Positives = 56/101 (55%)
 Frame = +2

Query: 20  EVLQTMYRKGSEPDVVTYTTIIDGFCKFGRYKSAVEIWHEMVGRGFSPDVVACGALVFGL 199
           E+ + M  KG  PD+VT+  +ID F + G      ++  EM      PD +   A+V  L
Sbjct: 350 ELFEEMCGKGIRPDMVTFNILIDAFLREGSTHVVKKLLDEMTKMRVLPDCIFYTAVVDHL 409

Query: 200 CERGKVDLAYELTLGMMKYQVEFSISVYNALISGFCQAGRV 322
           C+ GKVD+A+ +   M++  V   +  YNAL++GFC+  RV
Sbjct: 410 CKNGKVDVAHSVFRDMVENGVNPDVISYNALLNGFCKTSRV 450



 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 34/109 (31%), Positives = 57/109 (52%)
 Frame = +2

Query: 2   RLDTAIEVLQTMYRKGSEPDVVTYTTIIDGFCKFGRYKSAVEIWHEMVGRGFSPDVVACG 181
           R+D A+++   M R G  PD+VTY  +++  C+ G    AV +   M   G  PD+ +  
Sbjct: 239 RVDKAMKIKAFMSRTGCVPDLVTYNILLNYCCEEGMVDEAVRLVETMERSGVEPDLYSYN 298

Query: 182 ALVFGLCERGKVDLAYELTLGMMKYQVEFSISVYNALISGFCQAGRVDK 328
            L+ G C+   VD A+ + +  M+ +    +  YN +I+ FC+A R  K
Sbjct: 299 ELLKGFCKANMVDRAHLMMVERMQTKGMCDVVSYNTVITAFCKARRTRK 347



 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 29/84 (34%), Positives = 45/84 (53%)
 Frame = +2

Query: 2   RLDTAIEVLQTMYRKGSEPDVVTYTTIIDGFCKFGRYKSAVEIWHEMVGRGFSPDVVACG 181
           ++D A  V + M   G  PDV++Y  +++GFCK  R   A+ ++ EM  +G  PD V   
Sbjct: 414 KVDVAHSVFRDMVENGVNPDVISYNALLNGFCKTSRVMDAMHLFDEMQSKGLYPDEVTYK 473

Query: 182 ALVFGLCERGKVDLAYELTLGMMK 253
            +V GL    K+ LA  +   MM+
Sbjct: 474 LIVGGLIRGKKISLACRVWDQMME 497


>dbj|BAK04970.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 660

 Score =  125 bits (313), Expect = 5e-27
 Identities = 58/110 (52%), Positives = 78/110 (70%)
 Frame = +2

Query: 2   RLDTAIEVLQTMYRKGSEPDVVTYTTIIDGFCKFGRYKSAVEIWHEMVGRGFSPDVVACG 181
           RL  A+++++ M  KG+ PDVVTYTT++   C   R+  AV +W EMV  G  PDVVACG
Sbjct: 275 RLHDALQMVEKMRGKGTIPDVVTYTTVVGCLCNNKRFSEAVGLWEEMVKMGLKPDVVACG 334

Query: 182 ALVFGLCERGKVDLAYELTLGMMKYQVEFSISVYNALISGFCQAGRVDKA 331
           AL+FGLC+  KV+ A+EL   M+   +E S+S+YNALISGF +AG +DKA
Sbjct: 335 ALIFGLCKNSKVEEAFELASRMLSLNIELSVSIYNALISGFWRAGSIDKA 384



 Score = 72.0 bits (175), Expect = 5e-11
 Identities = 38/111 (34%), Positives = 62/111 (55%)
 Frame = +2

Query: 2   RLDTAIEVLQTMYRKGSEPDVVTYTTIIDGFCKFGRYKSAVEIWHEMVGRGFSPDVVACG 181
           +LD A   +      G   D+V+   +ID FCK  + KSA+E++ EM  +G   D V  G
Sbjct: 450 QLDKAFAFVSDHMEVGGFCDIVSCNILIDAFCKVKKVKSALELFKEMDYKGMQADAVTYG 509

Query: 182 ALVFGLCERGKVDLAYELTLGMMKYQVEFSISVYNALISGFCQAGRVDKAQ 334
            L+ GL   G  +LA EL   M+K Q++ ++++YN ++   C+ G + +AQ
Sbjct: 510 TLINGLFSVGYYNLAEELFEQMLKAQIDPNVNLYNIMLHHLCKVGDLKRAQ 560



 Score = 58.9 bits (141), Expect = 4e-07
 Identities = 32/111 (28%), Positives = 52/111 (46%)
 Frame = +2

Query: 2   RLDTAIEVLQTMYRKGSEPDVVTYTTIIDGFCKFGRYKSAVEIWHEMVGRGFSPDVVACG 181
           R   A+ + + M + G +PDVV    +I G CK  + + A E+   M+       V    
Sbjct: 310 RFSEAVGLWEEMVKMGLKPDVVACGALIFGLCKNSKVEEAFELASRMLSLNIELSVSIYN 369

Query: 182 ALVFGLCERGKVDLAYELTLGMMKYQVEFSISVYNALISGFCQAGRVDKAQ 334
           AL+ G    G +D AY +   M     E  +  YN L++ +C  G ++KA+
Sbjct: 370 ALISGFWRAGSIDKAYTIISFMRTNGCEPGVVTYNILLNHYCTIGMMEKAE 420



 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 32/109 (29%), Positives = 52/109 (47%)
 Frame = +2

Query: 5   LDTAIEVLQTMYRKGSEPDVVTYTTIIDGFCKFGRYKSAVEIWHEMVGRGFSPDVVACGA 184
           +D A  ++  M   G EP VVTY  +++ +C  G  + A  +  +M   G +PD  +   
Sbjct: 381 IDKAYTIISFMRTNGCEPGVVTYNILLNHYCTIGMMEKAENLITKMETSGVNPDRYSYNQ 440

Query: 185 LVFGLCERGKVDLAYELTLGMMKYQVEFSISVYNALISGFCQAGRVDKA 331
           L+ GLC+  ++D A+      M+      I   N LI  FC+  +V  A
Sbjct: 441 LLKGLCKTHQLDKAFAFVSDHMEVGGFCDIVSCNILIDAFCKVKKVKSA 489



 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 30/98 (30%), Positives = 54/98 (55%)
 Frame = +2

Query: 2   RLDTAIEVLQTMYRKGSEPDVVTYTTIIDGFCKFGRYKSAVEIWHEMVGRGFSPDVVACG 181
           ++ +A+E+ + M  KG + D VTY T+I+G    G Y  A E++ +M+     P+V    
Sbjct: 485 KVKSALELFKEMDYKGMQADAVTYGTLINGLFSVGYYNLAEELFEQMLKAQIDPNVNLYN 544

Query: 182 ALVFGLCERGKVDLAYELTLGMMKYQVEFSISVYNALI 295
            ++  LC+ G +  A ++ L M++ ++   I  YN LI
Sbjct: 545 IMLHHLCKVGDLKRAQKIFLHMIQKEILPDIVTYNTLI 582