BLASTX nr result

ID: Coptis21_contig00017549 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00017549
         (1179 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI23166.3| unnamed protein product [Vitis vinifera]              107   4e-21
ref|XP_002518540.1| conserved hypothetical protein [Ricinus comm...   106   1e-20
ref|XP_002305617.1| predicted protein [Populus trichocarpa] gi|2...   102   2e-19
ref|XP_003556023.1| PREDICTED: uncharacterized protein LOC100791...   101   3e-19
ref|XP_002317214.1| predicted protein [Populus trichocarpa] gi|2...   101   3e-19

>emb|CBI23166.3| unnamed protein product [Vitis vinifera]
          Length = 197

 Score =  107 bits (268), Expect = 4e-21
 Identities = 74/187 (39%), Positives = 103/187 (55%), Gaps = 17/187 (9%)
 Frame = +2

Query: 188 ENIAVCDQEESSLDTTEMSDSFIVDIENLSQDTVQEISSNSRISVKLQRNLSRKGSQRAE 367
           + I V DQ       TE SDSF+VD+E       ++ ++NSRI+  LQR+LSRKGSQR  
Sbjct: 7   QKILVSDQVNGFQYKTEKSDSFVVDMEGFPNGVNKDTTANSRIT--LQRSLSRKGSQRGG 64

Query: 368 RNKTTLASSGVTDG---SKTAGTLSTGGCNPDKSTPAPLMSSSK------ELLSKQPQQA 520
             K    +S   D    + +      GG   +K     + +++         +  Q    
Sbjct: 65  EKKPNSVASIDADAVLATSSPRAALAGGSTLEKPVAVVVAAAAAGGTIDHHPVGSQVHHH 124

Query: 521 ITITA-------ENRFNCRR-SFKQRTSASIIDPRRVLFYFATLSSMGTLLLIYFTLSIT 676
           I ITA       E+RF  RR SF++ + + +IDPRR+LF+FATLSSMGT+LLIYFTLSI 
Sbjct: 125 IAITAGNISTITESRFISRRYSFRRASPSWLIDPRRILFFFATLSSMGTILLIYFTLSIK 184

Query: 677 KFSGDNT 697
           +  GD+T
Sbjct: 185 RLGGDDT 191


>ref|XP_002518540.1| conserved hypothetical protein [Ricinus communis]
           gi|223542385|gb|EEF43927.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 214

 Score =  106 bits (264), Expect = 1e-20
 Identities = 74/188 (39%), Positives = 103/188 (54%), Gaps = 15/188 (7%)
 Frame = +2

Query: 176 DMGMENIAVCDQEESSLDTTEMSDSFIVDIENLSQDTV-QEISSNSRISVKLQRNLSRKG 352
           +MG + I+V D       + E SD+F++D+E+ S  T  +E++ NSRI+  LQR+LSRKG
Sbjct: 25  NMGTQKISVLDHINGFEYSAEKSDNFVIDMESFSHATNNKEVNPNSRIT--LQRSLSRKG 82

Query: 353 SQRAER---NKTTLASSGVTDGSKTAGTLSTGGCN-PDKSTPAPLMSSSKELLSKQPQQA 520
           S R      +K   ++    D      T S  G   P+K +   + ++     S Q    
Sbjct: 83  SLRMSGRGGDKKINSNPSPNDRDAAVATSSPRGPGMPEKGSMVSVGTADHPSSSAQVHHQ 142

Query: 521 ITITAENRFNC----------RRSFKQRTSASIIDPRRVLFYFATLSSMGTLLLIYFTLS 670
           ITIT  N  N           R SFK+ + +  IDP+RVLF+FATLSSMGT+LLIYFTLS
Sbjct: 143 ITITTTNNLNASSTEGRCTIRRNSFKRPSLSWTIDPKRVLFFFATLSSMGTMLLIYFTLS 202

Query: 671 ITKFSGDN 694
           I K   D+
Sbjct: 203 IGKLGADD 210


>ref|XP_002305617.1| predicted protein [Populus trichocarpa] gi|222848581|gb|EEE86128.1|
           predicted protein [Populus trichocarpa]
          Length = 195

 Score =  102 bits (253), Expect = 2e-19
 Identities = 70/182 (38%), Positives = 96/182 (52%), Gaps = 11/182 (6%)
 Frame = +2

Query: 179 MGMENIAVCDQEESSLDTTEMSDSFIVDIENLSQDTVQEISSNSRISVKLQRNLSRKGSQ 358
           M  + + V D+ +    T E SDSFI+D+E+ S    ++I++N RI+  LQRNLSRKGS 
Sbjct: 16  MEAQKLTVLDRIDGFQYTKEKSDSFIIDMESFSHGINKDINTNQRIT--LQRNLSRKGSP 73

Query: 359 RAE----RNKTTLASSGVTDGSKTAGTLSTGGCNPDKSTPAPLMSSSKELLSKQPQQAIT 526
           R        K     S + D      + S  G +  +      + +     S Q    IT
Sbjct: 74  RGGGGGGEKKIHSNLSHLCDKEAIVASASPRGPSTPEKAAVVTVGTPDHSSSPQVHHQIT 133

Query: 527 ITA-------ENRFNCRRSFKQRTSASIIDPRRVLFYFATLSSMGTLLLIYFTLSITKFS 685
           IT        E R   R SFK+ + + ++DP+RVLF+FATLSSMGT+LLIY TLSI K  
Sbjct: 134 ITTGSINGTPEGRCIRRNSFKRASPSWVLDPKRVLFFFATLSSMGTMLLIYLTLSIGKLK 193

Query: 686 GD 691
            D
Sbjct: 194 TD 195


>ref|XP_003556023.1| PREDICTED: uncharacterized protein LOC100791649 [Glycine max]
          Length = 219

 Score =  101 bits (252), Expect = 3e-19
 Identities = 72/193 (37%), Positives = 104/193 (53%), Gaps = 16/193 (8%)
 Frame = +2

Query: 161 ETEFGDMGMENIAVCDQEESSLDTTEMSDSFIVDIENLSQDTVQEIS-SNSRISVKLQRN 337
           E+E  +MG + I V D       + E +DSF++D+++ S    ++ + +NSRI+  LQR+
Sbjct: 22  ESEQKNMGTQRILVSDHTNGYQYSAEEADSFVIDMDSFSSGINKDSTKANSRIT--LQRS 79

Query: 338 LSRKGSQRAERNKT----TLASSGVTDGSKTAGTLSTGGCNPDKSTPAPLMSSSKELLSK 505
           LSRKGSQR    K     TL        + +      G C  +KS    +  S+    + 
Sbjct: 80  LSRKGSQRGGDRKVNGNVTLHDRDTAPTTCSPKAALAGSCTAEKSAVVAV-GSTHHSTNT 138

Query: 506 QPQQAITITAEN-----------RFNCRRSFKQRTSASIIDPRRVLFYFATLSSMGTLLL 652
           Q    ITITA N           +F  RR+  +R S+ ++DP+RVL  FATLSSMGT+LL
Sbjct: 139 QVHHQITITASNMCTTTPTPNESKFITRRNSFKRPSSWLLDPKRVLLLFATLSSMGTMLL 198

Query: 653 IYFTLSITKFSGD 691
           IYFTL+I+K   D
Sbjct: 199 IYFTLTISKQKAD 211


>ref|XP_002317214.1| predicted protein [Populus trichocarpa] gi|222860279|gb|EEE97826.1|
           predicted protein [Populus trichocarpa]
          Length = 204

 Score =  101 bits (252), Expect = 3e-19
 Identities = 70/186 (37%), Positives = 103/186 (55%), Gaps = 13/186 (6%)
 Frame = +2

Query: 179 MGMENIAVCDQEESSLDTTEMSDSFIVDIENLSQDTVQEISSNSRISVKLQRNLSRKGSQ 358
           M  + I+V D       T E SDSF++D+E  S    ++ ++NSRI+  LQR+ SRKGS 
Sbjct: 19  MEAQKISVLDHINGFQCTKEKSDSFVIDMERFSHGINKDSNTNSRIT--LQRSHSRKGSP 76

Query: 359 RA-----ERNKTTLASSGVTDGSKTAGTLSTGGCNPDKSTPAPLMSSSKELLSKQPQQAI 523
           R      ++  + L+   V+D      + S  G +  +   A  + ++    S Q    I
Sbjct: 77  RGGGGGEKKINSNLSHLSVSDRDAIVASASPRGPSTPEKAAAVTVGTADHSSSPQLHHQI 136

Query: 524 TITA-------ENRFNCRRSFKQRTSASIIDPRRVLFYFATLSSMGTLLLIYFTLSITKF 682
           TIT        E+R   R SFK+ + + ++DP+RVLF+FATLSSMGT+LLIY TLSI K 
Sbjct: 137 TITTGNMNATPESRCIRRNSFKRSSPSWVLDPKRVLFFFATLSSMGTMLLIYLTLSIGKL 196

Query: 683 SG-DNT 697
           +  DN+
Sbjct: 197 NAIDNS 202


Top