BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00017536
         (1404 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI40152.3| unnamed protein product [Vitis vinifera]              622   e-176
ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E sub...   622   e-176
ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E sub...   605   e-170
ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   605   e-170
ref|XP_002299208.1| RNA polymerase IV subunit [Populus trichocar...   605   e-170

>emb|CBI40152.3| unnamed protein product [Vitis vinifera]
          Length = 1890

 Score =  622 bits (1604), Expect = e-176
 Identities = 305/467 (65%), Positives = 371/467 (79%), Gaps = 1/467 (0%)
 Frame = -2

Query: 1403 EGYILQKLPVPPNCLSIPEXXXXXXXXXXXXXXXILRKVLKQAEIIKSSRSGHPNFESHK 1224
            +GYILQ LPVPPNCLS+P+               +L+KVLKQ E+IK SRSG PNFESHK
Sbjct: 264  DGYILQYLPVPPNCLSVPDISDGVSIMSSDLSVSMLKKVLKQIEVIKGSRSGEPNFESHK 323

Query: 1223 VEVNDLQSTVAEYFLARGTAKDSRDIKMS-GIRKEVGDYATKAWFEKMKTFFISKGSGYS 1047
            +E N+LQS++ +Y   RGTAK SR +    G  KE  + +TKAW EKM+T FI KGSG+S
Sbjct: 324  IEANNLQSSIEQYLEVRGTAKTSRSLDTRFGSSKEPNESSTKAWLEKMRTLFIRKGSGFS 383

Query: 1046 SRSVISGDAYKRVNEIGLPLEIAQRITFEEKVTERNKVHLQELVDKKLCLTYSDGASMYS 867
            SRSVI+GDAYKRVNEIGLP EIAQRITFEE+V   N  HLQ LVD+KLCLTY DG S YS
Sbjct: 384  SRSVITGDAYKRVNEIGLPFEIAQRITFEERVNVHNMKHLQNLVDEKLCLTYRDGLSTYS 443

Query: 866  LREGSKGHTILRVGQVVHRRIMDGDVVFINRPPSTHKHSLQALSVYVHEDHTVKINPLIC 687
            LREGSKGHT LR GQVVHRRIMDGD+VFINRPP+THKHSLQALSVYVH+DHTVKINPLIC
Sbjct: 444  LREGSKGHTFLRPGQVVHRRIMDGDIVFINRPPTTHKHSLQALSVYVHDDHTVKINPLIC 503

Query: 686  GPLGADFDGDCIHIFYPQSLAARAEVLELFSVEQQLLSSHTGSLNLQLANDALLSLKIMF 507
            GPL ADFDGDC+H+FYPQSL A+AEVLELFSVE+QLLSSH+G+LNLQLA D+LLSLK++F
Sbjct: 504  GPLSADFDGDCVHLFYPQSLGAKAEVLELFSVEKQLLSSHSGNLNLQLATDSLLSLKVLF 563

Query: 506  KNFFFDKATAQQLAMFVSTNLPQPTLLKAFSVGSQWTALQILQSVFPDHFDSLGERYIVN 327
            + +F +KA AQQL MFVS +LP+P LLK+   G  WTALQILQ+  P +FD +GER+ ++
Sbjct: 564  ERYFLNKAAAQQLVMFVSMSLPRPALLKSPCSGPCWTALQILQTALPSYFDCIGERHWIS 623

Query: 326  QGEILKFDFNRDMVESLFNEIISSVFVDNGSKEALNVFNSLQPLLMENLFLEGYSVCLKD 147
            +  ILK D+NRD+++SL NEI++S+F + G  E L  F+SLQPLLMENLF EG+SV L+D
Sbjct: 624  KSAILKVDYNRDVLQSLVNEIVTSIFSEKGPNEVLKFFDSLQPLLMENLFSEGFSVSLED 683

Query: 146  FSVPKSFFEDLPMSIQDISSLLHRLRSRHNELVELQVRNHLPSVKAP 6
            FS+P    +++  +++DISSLL+ LRS +NEL++LQ  NHL   K P
Sbjct: 684  FSIPSEVTQNIQKNVEDISSLLYNLRSMYNELLQLQAENHLRLTKVP 730


>ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E subunit 1 [Vitis vinifera]
          Length = 1830

 Score =  622 bits (1604), Expect = e-176
 Identities = 305/467 (65%), Positives = 371/467 (79%), Gaps = 1/467 (0%)
 Frame = -2

Query: 1403 EGYILQKLPVPPNCLSIPEXXXXXXXXXXXXXXXILRKVLKQAEIIKSSRSGHPNFESHK 1224
            +GYILQ LPVPPNCLS+P+               +L+KVLKQ E+IK SRSG PNFESHK
Sbjct: 204  DGYILQYLPVPPNCLSVPDISDGVSIMSSDLSVSMLKKVLKQIEVIKGSRSGEPNFESHK 263

Query: 1223 VEVNDLQSTVAEYFLARGTAKDSRDIKMS-GIRKEVGDYATKAWFEKMKTFFISKGSGYS 1047
            +E N+LQS++ +Y   RGTAK SR +    G  KE  + +TKAW EKM+T FI KGSG+S
Sbjct: 264  IEANNLQSSIEQYLEVRGTAKTSRSLDTRFGSSKEPNESSTKAWLEKMRTLFIRKGSGFS 323

Query: 1046 SRSVISGDAYKRVNEIGLPLEIAQRITFEEKVTERNKVHLQELVDKKLCLTYSDGASMYS 867
            SRSVI+GDAYKRVNEIGLP EIAQRITFEE+V   N  HLQ LVD+KLCLTY DG S YS
Sbjct: 324  SRSVITGDAYKRVNEIGLPFEIAQRITFEERVNVHNMKHLQNLVDEKLCLTYRDGLSTYS 383

Query: 866  LREGSKGHTILRVGQVVHRRIMDGDVVFINRPPSTHKHSLQALSVYVHEDHTVKINPLIC 687
            LREGSKGHT LR GQVVHRRIMDGD+VFINRPP+THKHSLQALSVYVH+DHTVKINPLIC
Sbjct: 384  LREGSKGHTFLRPGQVVHRRIMDGDIVFINRPPTTHKHSLQALSVYVHDDHTVKINPLIC 443

Query: 686  GPLGADFDGDCIHIFYPQSLAARAEVLELFSVEQQLLSSHTGSLNLQLANDALLSLKIMF 507
            GPL ADFDGDC+H+FYPQSL A+AEVLELFSVE+QLLSSH+G+LNLQLA D+LLSLK++F
Sbjct: 444  GPLSADFDGDCVHLFYPQSLGAKAEVLELFSVEKQLLSSHSGNLNLQLATDSLLSLKVLF 503

Query: 506  KNFFFDKATAQQLAMFVSTNLPQPTLLKAFSVGSQWTALQILQSVFPDHFDSLGERYIVN 327
            + +F +KA AQQL MFVS +LP+P LLK+   G  WTALQILQ+  P +FD +GER+ ++
Sbjct: 504  ERYFLNKAAAQQLVMFVSMSLPRPALLKSPCSGPCWTALQILQTALPSYFDCIGERHWIS 563

Query: 326  QGEILKFDFNRDMVESLFNEIISSVFVDNGSKEALNVFNSLQPLLMENLFLEGYSVCLKD 147
            +  ILK D+NRD+++SL NEI++S+F + G  E L  F+SLQPLLMENLF EG+SV L+D
Sbjct: 564  KSAILKVDYNRDVLQSLVNEIVTSIFSEKGPNEVLKFFDSLQPLLMENLFSEGFSVSLED 623

Query: 146  FSVPKSFFEDLPMSIQDISSLLHRLRSRHNELVELQVRNHLPSVKAP 6
            FS+P    +++  +++DISSLL+ LRS +NEL++LQ  NHL   K P
Sbjct: 624  FSIPSEVTQNIQKNVEDISSLLYNLRSMYNELLQLQAENHLRLTKVP 670


>ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Cucumis
            sativus]
          Length = 1959

 Score =  605 bits (1559), Expect = e-170
 Identities = 304/467 (65%), Positives = 363/467 (77%), Gaps = 1/467 (0%)
 Frame = -2

Query: 1403 EGYILQKLPVPPNCLSIPEXXXXXXXXXXXXXXXILRKVLKQAEIIKSSRSGHPNFESHK 1224
            +GYILQ LPVPPNCLS+PE               +L+K+LKQ EIIK SRSG PNFESH+
Sbjct: 204  DGYILQYLPVPPNCLSVPEISDGVTVMSSDPAVSMLKKILKQVEIIKGSRSGAPNFESHE 263

Query: 1223 VEVNDLQSTVAEYFLARGTAKDSRDIKMS-GIRKEVGDYATKAWFEKMKTFFISKGSGYS 1047
            VE NDLQ  V +Y   RGT K SR I    G+ KE+ D +TKAW EKM+T FI KGSG+S
Sbjct: 264  VEANDLQLAVDQYLQVRGTVKASRGIDARFGVNKELNDPSTKAWLEKMRTLFIRKGSGFS 323

Query: 1046 SRSVISGDAYKRVNEIGLPLEIAQRITFEEKVTERNKVHLQELVDKKLCLTYSDGASMYS 867
            SRSVI+GDAYK VNEIG+P E+AQRITFEE+V+  N  +LQELVDKKLCLTY DG+S YS
Sbjct: 324  SRSVITGDAYKLVNEIGVPFEVAQRITFEERVSVHNIRYLQELVDKKLCLTYRDGSSAYS 383

Query: 866  LREGSKGHTILRVGQVVHRRIMDGDVVFINRPPSTHKHSLQALSVYVHEDHTVKINPLIC 687
            LREGS GHT L+ GQ+VHRRIMDGD+VFINRPP+THKHSLQAL VY+H+DH VKINPLIC
Sbjct: 384  LREGSMGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALRVYLHDDHVVKINPLIC 443

Query: 686  GPLGADFDGDCIHIFYPQSLAARAEVLELFSVEQQLLSSHTGSLNLQLANDALLSLKIMF 507
            GPL ADFDGDCIH+FYPQS+AA+AEVL LFSVE+QLLSSH+G+LNLQLAND+LLSLK+MF
Sbjct: 444  GPLSADFDGDCIHLFYPQSIAAKAEVLGLFSVEKQLLSSHSGNLNLQLANDSLLSLKMMF 503

Query: 506  KNFFFDKATAQQLAMFVSTNLPQPTLLKAFSVGSQWTALQILQSVFPDHFDSLGERYIVN 327
            + +F  KA AQQLAMFVS+ LP P LL   S    WTALQILQ+V P  FD  G+ Y++ 
Sbjct: 504  RKYFLGKAAAQQLAMFVSSYLPPPALLGVRSGSLHWTALQILQTVLPASFDCHGDSYLIK 563

Query: 326  QGEILKFDFNRDMVESLFNEIISSVFVDNGSKEALNVFNSLQPLLMENLFLEGYSVCLKD 147
                LKFDF+RD + SL NEI++S+F   G +E L  F+SLQPLLME++F EG+SV L D
Sbjct: 564  NSNFLKFDFDRDAMPSLINEILTSIFFQKGPEEVLKFFDSLQPLLMEHIFSEGFSVGLDD 623

Query: 146  FSVPKSFFEDLPMSIQDISSLLHRLRSRHNELVELQVRNHLPSVKAP 6
            +S+P +F + L  +IQ +S LL++LRS  NELVELQ+ NHL SVK P
Sbjct: 624  YSMPMAFLQALQKNIQVLSPLLYQLRSTFNELVELQLENHLRSVKVP 670


>ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase E subunit
            1-like [Cucumis sativus]
          Length = 2019

 Score =  605 bits (1559), Expect = e-170
 Identities = 304/467 (65%), Positives = 363/467 (77%), Gaps = 1/467 (0%)
 Frame = -2

Query: 1403 EGYILQKLPVPPNCLSIPEXXXXXXXXXXXXXXXILRKVLKQAEIIKSSRSGHPNFESHK 1224
            +GYILQ LPVPPNCLS+PE               +L+K+LKQ EIIK SRSG PNFESH+
Sbjct: 234  DGYILQYLPVPPNCLSVPEISDGVTVMSSDPAVSMLKKILKQVEIIKGSRSGAPNFESHE 293

Query: 1223 VEVNDLQSTVAEYFLARGTAKDSRDIKMS-GIRKEVGDYATKAWFEKMKTFFISKGSGYS 1047
            VE NDLQ  V +Y   RGT K SR I    G+ KE+ D +TKAW EKM+T FI KGSG+S
Sbjct: 294  VEANDLQLAVDQYLQVRGTVKASRGIDARFGVNKELNDPSTKAWLEKMRTLFIRKGSGFS 353

Query: 1046 SRSVISGDAYKRVNEIGLPLEIAQRITFEEKVTERNKVHLQELVDKKLCLTYSDGASMYS 867
            SRSVI+GDAYK VNEIG+P E+AQRITFEE+V+  N  +LQELVDKKLCLTY DG+S YS
Sbjct: 354  SRSVITGDAYKLVNEIGVPFEVAQRITFEERVSVHNIRYLQELVDKKLCLTYRDGSSAYS 413

Query: 866  LREGSKGHTILRVGQVVHRRIMDGDVVFINRPPSTHKHSLQALSVYVHEDHTVKINPLIC 687
            LREGS GHT L+ GQ+VHRRIMDGD+VFINRPP+THKHSLQAL VY+H+DH VKINPLIC
Sbjct: 414  LREGSMGHTYLKPGQIVHRRIMDGDIVFINRPPTTHKHSLQALRVYLHDDHVVKINPLIC 473

Query: 686  GPLGADFDGDCIHIFYPQSLAARAEVLELFSVEQQLLSSHTGSLNLQLANDALLSLKIMF 507
            GPL ADFDGDCIH+FYPQS+AA+AEVL LFSVE+QLLSSH+G+LNLQLAND+LLSLK+MF
Sbjct: 474  GPLSADFDGDCIHLFYPQSIAAKAEVLGLFSVEKQLLSSHSGNLNLQLANDSLLSLKMMF 533

Query: 506  KNFFFDKATAQQLAMFVSTNLPQPTLLKAFSVGSQWTALQILQSVFPDHFDSLGERYIVN 327
            + +F  KA AQQLAMFVS+ LP P LL   S    WTALQILQ+V P  FD  G+ Y++ 
Sbjct: 534  RKYFLGKAAAQQLAMFVSSYLPPPALLGVRSGSLHWTALQILQTVLPASFDCHGDSYLIK 593

Query: 326  QGEILKFDFNRDMVESLFNEIISSVFVDNGSKEALNVFNSLQPLLMENLFLEGYSVCLKD 147
                LKFDF+RD + SL NEI++S+F   G +E L  F+SLQPLLME++F EG+SV L D
Sbjct: 594  NSNFLKFDFDRDAMPSLINEILTSIFFQKGPEEVLKFFDSLQPLLMEHIFSEGFSVGLDD 653

Query: 146  FSVPKSFFEDLPMSIQDISSLLHRLRSRHNELVELQVRNHLPSVKAP 6
            +S+P +F + L  +IQ +S LL++LRS  NELVELQ+ NHL SVK P
Sbjct: 654  YSMPMAFLQALQKNIQVLSPLLYQLRSTFNELVELQLENHLRSVKVP 700


>ref|XP_002299208.1| RNA polymerase IV subunit [Populus trichocarpa]
            gi|222846466|gb|EEE84013.1| RNA polymerase IV subunit
            [Populus trichocarpa]
          Length = 842

 Score =  605 bits (1559), Expect = e-170
 Identities = 303/467 (64%), Positives = 363/467 (77%), Gaps = 1/467 (0%)
 Frame = -2

Query: 1403 EGYILQKLPVPPNCLSIPEXXXXXXXXXXXXXXXILRKVLKQAEIIKSSRSGHPNFESHK 1224
            +GYILQ+LPVPPNCLS+P                IL+KVLKQ E+IKSSRSG PNF++HK
Sbjct: 124  DGYILQQLPVPPNCLSVPAVSDGISIMSSDLSISILKKVLKQVEVIKSSRSGAPNFDAHK 183

Query: 1223 VEVNDLQSTVAEYFLARGTAKDSRDIKMS-GIRKEVGDYATKAWFEKMKTFFISKGSGYS 1047
             E N LQS V  Y   RGT K SRD+ +  G++K+  + +TKAW EKM+T FI KGSG+S
Sbjct: 184  DEANSLQSMVDRYLQVRGTTKTSRDVDVRYGVKKDSSESSTKAWLEKMRTLFIRKGSGFS 243

Query: 1046 SRSVISGDAYKRVNEIGLPLEIAQRITFEEKVTERNKVHLQELVDKKLCLTYSDGASMYS 867
            SRSVI+GDAY +VN++G+P EIAQRITFEE+V+  N  +LQELVD KLCLTY DG+S YS
Sbjct: 244  SRSVITGDAYTKVNQVGIPYEIAQRITFEERVSVHNMRYLQELVDNKLCLTYRDGSSTYS 303

Query: 866  LREGSKGHTILRVGQVVHRRIMDGDVVFINRPPSTHKHSLQALSVYVHEDHTVKINPLIC 687
            LREGSKGHT LR GQVVHRRI+DGDVVFINRPP+THKHSLQALSVYVH+DHTVKINPLIC
Sbjct: 304  LREGSKGHTFLRPGQVVHRRIIDGDVVFINRPPTTHKHSLQALSVYVHDDHTVKINPLIC 363

Query: 686  GPLGADFDGDCIHIFYPQSLAARAEVLELFSVEQQLLSSHTGSLNLQLANDALLSLKIMF 507
            GPL ADFDGDC+H+FYPQSLAA+AEVLELFSVE+QLLSSH+G+LNLQL  D+LLSLK++F
Sbjct: 364  GPLSADFDGDCVHLFYPQSLAAKAEVLELFSVEKQLLSSHSGNLNLQLTTDSLLSLKMIF 423

Query: 506  KNFFFDKATAQQLAMFVSTNLPQPTLLKAFSVGSQWTALQILQSVFPDHFDSLGERYIVN 327
            K  F DK+ AQQLAMFVS +LPQP LLK   +   WTA QILQ   P  F+  GER+++N
Sbjct: 424  KACFLDKSAAQQLAMFVSPDLPQPALLKVNCIRPYWTAHQILQMALPTCFNCSGERFLIN 483

Query: 326  QGEILKFDFNRDMVESLFNEIISSVFVDNGSKEALNVFNSLQPLLMENLFLEGYSVCLKD 147
               +LK DFNRD+V S+ NEI+ S+F + GS   L  FN+LQPLLMENLF EG+SV LKD
Sbjct: 484  NSNVLKVDFNRDVVASMINEILISIFFEKGSGAVLKFFNALQPLLMENLFSEGFSVSLKD 543

Query: 146  FSVPKSFFEDLPMSIQDISSLLHRLRSRHNELVELQVRNHLPSVKAP 6
            FS+ ++  + +  S + IS LL  LRS +NELVELQV NH+  VK P
Sbjct: 544  FSISQAVKQSIQESFKVISPLLCNLRSTYNELVELQVENHIQDVKTP 590