BLASTX nr result
ID: Coptis21_contig00017524
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis21_contig00017524 (2820 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value emb|CBI28010.3| unnamed protein product [Vitis vinifera] 687 0.0 ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polyme... 683 0.0 ref|XP_002883963.1| RNA-dependent RNA polymerase family protein ... 592 e-166 ref|XP_004135802.1| PREDICTED: probable RNA-dependent RNA polyme... 588 e-165 ref|XP_003517644.1| PREDICTED: probable RNA-dependent RNA polyme... 578 e-162 >emb|CBI28010.3| unnamed protein product [Vitis vinifera] Length = 929 Score = 687 bits (1773), Expect = 0.0 Identities = 383/686 (55%), Positives = 468/686 (68%), Gaps = 18/686 (2%) Frame = -2 Query: 2816 LGEEAALRILQKF-----RSLSDYITFVVGNLESHSSQGSVLFXXXXXXXXXXXXXXXXX 2652 LGEE+ L +L+K R+LS I ++VG ++QG Sbjct: 36 LGEESTLELLRKISHLKIRNLSALINYMVGK----AAQG--------------------- 70 Query: 2651 DVSDSLCMQEQGRKQNSASSTTSSRMNLNSARHENPGISNKPILESLEKLEFRKAFLILS 2472 D+ + S+ S+T + AR + ++ P L +L +LEFRKAFLILS Sbjct: 71 ---DAASHSPTPKHLISSPSSTPKK-----ARRQ----ASSPQLVALGELEFRKAFLILS 118 Query: 2471 YCGKTKLEDVVSVDLIQRLQNMPMRAFESELWRVLGSKCIDEIDRRKNVDWDSGRTYLYH 2292 Y G + ED++S + I +L+N+PM FE+E+W LG K I E DR+++ DWDS +T++YH Sbjct: 119 YIGDKRPEDLLSAEEILKLKNLPMGVFETEVWNNLGRKFIKEEDRQRSFDWDSDKTHIYH 178 Query: 2291 CYVDQDATYRFKGPYLHKQRTHLQRVLGDENVLLVKFA-------------DHSSEYCTI 2151 C+V D +YRFKGPYL+K RTHLQRVLGDEN+LLVKFA D ++ Y I Sbjct: 179 CHVSPDGSYRFKGPYLNKTRTHLQRVLGDENILLVKFAEDVTDRSSLNCSTDSNASYNKI 238 Query: 2150 AKDGILVGLRHFCFFVFKDGGKEEKKKNPTSSAVKCYFVCKEANAFADMRGPYTSFTNHE 1971 A++GI VGLR + FFVFKDGGKEEKKKNPTSS VKCYFV E++A + T HE Sbjct: 239 AREGIFVGLRQYRFFVFKDGGKEEKKKNPTSS-VKCYFVFMESSALSGK-------TVHE 290 Query: 1970 ARCLFMHVRTVSSVVKYMARFSLILSKTVQLDIDLASVNIERISDIPCLDPDGNSICNEE 1791 ARC+FMH VSSV KYMARFSLILSKTV+LD+DL++VNI+RI D P D DG+ + +E+ Sbjct: 291 ARCIFMHAHMVSSVAKYMARFSLILSKTVKLDVDLSTVNIQRIDDEPGRDEDGHVVYDED 350 Query: 1790 GEPLILTDGTGFISEDLAANCPENIYKLKFMCQRESEMVLDCGENQGESSVLTQQKYHLR 1611 +PLILTDGTGFISEDLA CP N+ + K+M N G S Sbjct: 351 WKPLILTDGTGFISEDLALRCPNNLCRGKYM-------------NNGNSD---------- 387 Query: 1610 EPPLLIQSRLFHNGIAVKGTFLVNKKLPPKTIQIRPSMIKVEADPKLLGTLSANSLEIVS 1431 PLLIQ RLF+NG AVKGT L+N+KLPP+TIQIRPSMIKVE DPKL T + NS+EI Sbjct: 388 --PLLIQCRLFNNGCAVKGTLLLNRKLPPRTIQIRPSMIKVETDPKLSDTQTVNSVEING 445 Query: 1430 TSSKPRKTSYLSRYLIALLNYGGVPTEFFMELLVNALEDARQVHSNKRAALLVSLRYGEM 1251 TS++PR+ SYLS+YLIALL+YGGVP E+FM LL +ALEDA V S+KRAAL VSLR+GEM Sbjct: 446 TSNQPRR-SYLSKYLIALLSYGGVPNEYFMNLLKDALEDAPSVQSSKRAALRVSLRFGEM 504 Query: 1250 DDFLVPRMILSGIPLYEPYLKTRLSVIMNEEXXXXXXXXLPITECYYLMGTADPTGRLKG 1071 DD +V RMILSGIP+ EP+L LS ++NEE LP+ +C+YLMGTADPTG LK Sbjct: 505 DDSIVTRMILSGIPIDEPFLHHCLSFMVNEERKGLRVGKLPVNDCFYLMGTADPTGTLKS 564 Query: 1070 DEVCIILDHGQVTGEVLVYRHPGLHFGDIHVLTATIVRGLEEIVGNSKYAIFFPTKRCRS 891 DEVCIILDHGQV G VLVY+HPGLHFGDIHVL AT V LEE VGN+KYAIFFP K RS Sbjct: 565 DEVCIILDHGQVQGRVLVYKHPGLHFGDIHVLNATYVEALEEFVGNAKYAIFFPIKGPRS 624 Query: 890 LADEIANGDFDGDMYWVSRNPQACPY 813 LADE+AN DFDGDMYWVSRN Q Y Sbjct: 625 LADEMANSDFDGDMYWVSRNQQLLQY 650 >ref|XP_002280491.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Vitis vinifera] Length = 943 Score = 683 bits (1763), Expect = 0.0 Identities = 384/694 (55%), Positives = 471/694 (67%), Gaps = 26/694 (3%) Frame = -2 Query: 2816 LGEEAALRILQKF-----RSLSDYITFVVGNLESHSSQGSVLFXXXXXXXXXXXXXXXXX 2652 LGEE+ L +L+K R+LS I ++VG ++QG Sbjct: 36 LGEESTLELLRKISHLKIRNLSALINYMVGK----AAQG--------------------- 70 Query: 2651 DVSDSLCMQEQGRKQNSASSTTSSRMNLNSARHENPGISNKPILESLEKLEFRKAFLILS 2472 D+ + S+ S+T + AR + ++ P L +L +LEFRKAFLILS Sbjct: 71 ---DAASHSPTPKHLISSPSSTPKK-----ARRQ----ASSPQLVALGELEFRKAFLILS 118 Query: 2471 YCGKTKLEDVVSVDLIQRLQNMPMRAFESELWRVLGSKCIDEIDRRKNVDWDSGRTYLYH 2292 Y G+ + ED++S + I +L+N+PM FE+E+W LG K I E DR+++ DWDS +T++YH Sbjct: 119 YIGELRPEDLLSAEEILKLKNLPMGVFETEVWNNLGRKFIKEEDRQRSFDWDSDKTHIYH 178 Query: 2291 CYVDQDATYRFK--------GPYLHKQRTHLQRVLGDENVLLVKFA-------------D 2175 C+V D +YRFK GPYL+K RTHLQRVLGDEN+LLVKFA D Sbjct: 179 CHVSPDGSYRFKVCISSSLNGPYLNKTRTHLQRVLGDENILLVKFAEDVTDRSSLNCSTD 238 Query: 2174 HSSEYCTIAKDGILVGLRHFCFFVFKDGGKEEKKKNPTSSAVKCYFVCKEANAFADMRGP 1995 ++ Y IA++GI VGLR + FFVFKDGGKEEKKKNPTSS VKCYFV E++A + Sbjct: 239 SNASYNKIAREGIFVGLRQYRFFVFKDGGKEEKKKNPTSS-VKCYFVFMESSALSGK--- 294 Query: 1994 YTSFTNHEARCLFMHVRTVSSVVKYMARFSLILSKTVQLDIDLASVNIERISDIPCLDPD 1815 T HEARC+FMH VSSV KYMARFSLILSKTV+LD+DL++VNI+RI D P D D Sbjct: 295 ----TVHEARCIFMHAHMVSSVAKYMARFSLILSKTVKLDVDLSTVNIQRIDDEPGRDED 350 Query: 1814 GNSICNEEGEPLILTDGTGFISEDLAANCPENIYKLKFMCQRESEMVLDCGENQGESSVL 1635 G+ + +E+ +PLILTDGTGFISEDLA CP N+ + K+M N G S V Sbjct: 351 GHVVYDEDWKPLILTDGTGFISEDLALRCPNNLCRGKYM-------------NNGNSDVC 397 Query: 1634 TQQKYHLREPPLLIQSRLFHNGIAVKGTFLVNKKLPPKTIQIRPSMIKVEADPKLLGTLS 1455 + PLLIQ RLF+NG AVKGT L+N+KLPP+TIQIRPSMIKVE DPKL T + Sbjct: 398 DSRY------PLLIQCRLFNNGCAVKGTLLLNRKLPPRTIQIRPSMIKVETDPKLSDTQT 451 Query: 1454 ANSLEIVSTSSKPRKTSYLSRYLIALLNYGGVPTEFFMELLVNALEDARQVHSNKRAALL 1275 NS+EI TS++PR+ SYLS+YLIALL+YGGVP E+FM LL +ALEDA V S+KRAAL Sbjct: 452 VNSVEINGTSNQPRR-SYLSKYLIALLSYGGVPNEYFMNLLKDALEDAPSVQSSKRAALR 510 Query: 1274 VSLRYGEMDDFLVPRMILSGIPLYEPYLKTRLSVIMNEEXXXXXXXXLPITECYYLMGTA 1095 VSLR+GEMDD +V RMILSGIP+ EP+L LS ++NEE LP+ +C+YLMGTA Sbjct: 511 VSLRFGEMDDSIVTRMILSGIPIDEPFLHHCLSFMVNEERKGLRVGKLPVNDCFYLMGTA 570 Query: 1094 DPTGRLKGDEVCIILDHGQVTGEVLVYRHPGLHFGDIHVLTATIVRGLEEIVGNSKYAIF 915 DPTG LK DEVCIILDHGQV G VLVY+HPGLHFGDIHVL AT V LEE VGN+KYAIF Sbjct: 571 DPTGTLKSDEVCIILDHGQVQGRVLVYKHPGLHFGDIHVLNATYVEALEEFVGNAKYAIF 630 Query: 914 FPTKRCRSLADEIANGDFDGDMYWVSRNPQACPY 813 FP K RSLADE+AN DFDGDMYWVSRN Q Y Sbjct: 631 FPIKGPRSLADEMANSDFDGDMYWVSRNQQLLQY 664 >ref|XP_002883963.1| RNA-dependent RNA polymerase family protein [Arabidopsis lyrata subsp. lyrata] gi|297329803|gb|EFH60222.1| RNA-dependent RNA polymerase family protein [Arabidopsis lyrata subsp. lyrata] Length = 981 Score = 592 bits (1526), Expect = e-166 Identities = 315/610 (51%), Positives = 413/610 (67%), Gaps = 13/610 (2%) Frame = -2 Query: 2615 RKQNSASSTTSSRMNLNSARHENPGISNKPILESLEKLEFRKAFLILSYCGKTKLEDVVS 2436 +++ S S S +L S EN G + P L +L +LEF+KAFL+LSY +L V + Sbjct: 112 QEEMSVDSDAPSPKSLKS--EENGGSLHIPQLVALGELEFKKAFLLLSYIPGQQLGQVTT 169 Query: 2435 VDLIQRLQNMPMRAFESELWRVLGSKCIDEIDRRKNVDWDSGRTYLYHCYVDQDATYRFK 2256 D I+ +++PM A+E+ +W LG + + DRR + WDSG+T+ Y C+V D +Y FK Sbjct: 170 ADEIRLWKDLPMVAYEAAVWDRLGRRYCPQTDRRM-LQWDSGKTHYYQCHVAPDGSYTFK 228 Query: 2255 GPYLHKQRTHLQRVLGDENVLLVKFAD---HSSEYCT--------IAKDGILVGLRHFCF 2109 GP L THL +VLGDENVL VKFAD +SS Y IAK+GI++GLR + F Sbjct: 229 GPLLEHTGTHLHKVLGDENVLTVKFADVPKNSSTYSNDRYFTYKEIAKNGIMIGLRRYQF 288 Query: 2108 FVFKDGGKEEKKKNPTSSAVKCYFVCKEANAFADMRGPY--TSFTNHEARCLFMHVRTVS 1935 FVFKDGGKEEKKK+ ++ VKCYF+ ++ A DM PY T + HEAR FMHV Sbjct: 289 FVFKDGGKEEKKKDLSTKKVKCYFIRTDSTASCDMENPYIFTGKSIHEARMHFMHVHRAP 348 Query: 1934 SVVKYMARFSLILSKTVQLDIDLASVNIERISDIPCLDPDGNSICNEEGEPLILTDGTGF 1755 ++ YMARFSLILSKT L++D+ + + I DI C D DG + ++ +P I +DGTG+ Sbjct: 349 TLANYMARFSLILSKTKTLEVDMTGITFDPIDDIHCHDQDGKDVLDKNKKPCIHSDGTGY 408 Query: 1754 ISEDLAANCPENIYKLKFMCQRESEMVLDCGENQGESSVLTQQKYHLREPPLLIQSRLFH 1575 ISEDLA CP NI+K K C R + C + +PPLLIQ R+F+ Sbjct: 409 ISEDLARMCPLNIFKGK--CLRSENIQEACNQ----------------DPPLLIQFRMFY 450 Query: 1574 NGIAVKGTFLVNKKLPPKTIQIRPSMIKVEADPKLLGTLSANSLEIVSTSSKPRKTSYLS 1395 +G AVKGTFL+NKKL P+T+Q+RPSMIKV DP L + N+LE+V+TS+ PR+T LS Sbjct: 451 DGYAVKGTFLLNKKLCPRTVQVRPSMIKVSKDPSLSNFSTFNALEVVTTSNPPRRTK-LS 509 Query: 1394 RYLIALLNYGGVPTEFFMELLVNALEDARQVHSNKRAALLVSLRYGEMDDFLVPRMILSG 1215 + L+ALL+YGG+P EFF+++L+N LE+++ + NK AAL V+L YGEMDD +MIL G Sbjct: 510 KNLVALLSYGGIPNEFFLDILLNTLEESKSIFYNKHAALNVALNYGEMDDQNAAQMILVG 569 Query: 1214 IPLYEPYLKTRLSVIMNEEXXXXXXXXLPITECYYLMGTADPTGRLKGDEVCIILDHGQV 1035 IPL EP+LK LS+++ E LP+TE YYLMGT DPTG LK DEVC+IL+ GQ+ Sbjct: 570 IPLDEPHLKNHLSILLKTEKNDLKAGRLPVTESYYLMGTVDPTGELKEDEVCVILESGQI 629 Query: 1034 TGEVLVYRHPGLHFGDIHVLTATIVRGLEEIVGNSKYAIFFPTKRCRSLADEIANGDFDG 855 +GEVLVYR+PGLHFGDIH+L AT V+ LEE VGNSKYA+FFP K RSL DEIA GDFDG Sbjct: 630 SGEVLVYRNPGLHFGDIHILKATYVKALEEYVGNSKYAVFFPQKGPRSLGDEIAGGDFDG 689 Query: 854 DMYWVSRNPQ 825 DMY++SRNP+ Sbjct: 690 DMYFISRNPE 699 >ref|XP_004135802.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Cucumis sativus] Length = 1056 Score = 588 bits (1517), Expect = e-165 Identities = 318/529 (60%), Positives = 386/529 (72%), Gaps = 24/529 (4%) Frame = -2 Query: 2327 VDWDSGRTYLYHCYVDQDATYRFKGPYLHKQRTHLQRVLGDENVLLVKFADHSSE----- 2163 VDWD +T++YHC+V D + RFKGP+L+ +THLQRVLGD+NVL+VKFA+ S+ Sbjct: 257 VDWDRRKTHIYHCHVALDGSCRFKGPFLNNTKTHLQRVLGDDNVLMVKFAEDKSDTPLSN 316 Query: 2162 --------YCTIAKDGILVGLRHFCFFVFKDGGKEEKKKNPTSSAVKCYFVCKEANAFAD 2007 Y IA+DGIL+GLR + FFVFKDGGKEEKKKNPT+SAVKCYFV E++A+ D Sbjct: 317 HSGGSFYAYSKIARDGILLGLRRYHFFVFKDGGKEEKKKNPTTSAVKCYFVRMESDAYID 376 Query: 2006 MRGPY--TSFTNHEARCLFMHVRTVSSVVKYMARFSLILSKTVQLDIDLASVNIERISDI 1833 PY ++ T EAR LFMH VSS+ YMARFSLILSKT+ L IDL++VN++RI DI Sbjct: 377 KIEPYKLSNRTVFEARSLFMHAHMVSSIASYMARFSLILSKTINLKIDLSTVNVQRIGDI 436 Query: 1832 PCLDPDGNSICNEEGEPLILTDGTGFISEDLAANCPENIYK--------LKFMCQRESEM 1677 PC D GN I + G+PLI TDGTGFISEDLA CP N++K LK + QR Sbjct: 437 PCKDIYGNVIYRD-GKPLIHTDGTGFISEDLALECPMNVFKGQAKHDADLKAIWQR---- 491 Query: 1676 VLDCGEN-QGESSVLTQQKYHLREPPLLIQSRLFHNGIAVKGTFLVNKKLPPKTIQIRPS 1500 + E Q ++ LT LREPPLLIQ RLF+NG+AVKGTFL+NK+LPP+TIQIR S Sbjct: 492 -IPAFEGFQNKTLQLTLPGLELREPPLLIQFRLFYNGLAVKGTFLLNKQLPPRTIQIRDS 550 Query: 1499 MIKVEADPKLLGTLSANSLEIVSTSSKPRKTSYLSRYLIALLNYGGVPTEFFMELLVNAL 1320 MIKVE DP L + NSLE+V TS+ P++T +LSR LIALLNYGGVP E+FM +LV+AL Sbjct: 551 MIKVEIDPDLENFETENSLELVGTSNPPKRT-FLSRNLIALLNYGGVPREYFMNILVDAL 609 Query: 1319 EDARQVHSNKRAALLVSLRYGEMDDFLVPRMILSGIPLYEPYLKTRLSVIMNEEXXXXXX 1140 +D + V S+KRAAL VS+ GEMDDFLV RMIL+GIPL E YL+ RLSV++ EE Sbjct: 610 KDVQGVFSSKRAALRVSINNGEMDDFLVARMILAGIPLDESYLQYRLSVLLKEEKKSLKS 669 Query: 1139 XXLPITECYYLMGTADPTGRLKGDEVCIILDHGQVTGEVLVYRHPGLHFGDIHVLTATIV 960 L + ECYYLMGT DPT L+ EVC+IL +GQ+ G+VLVYR+PGLHFGDIHVLTA V Sbjct: 670 GRLHVPECYYLMGTVDPTFTLESGEVCVILYNGQINGKVLVYRNPGLHFGDIHVLTAKYV 729 Query: 959 RGLEEIVGNSKYAIFFPTKRCRSLADEIANGDFDGDMYWVSRNPQACPY 813 L +VGN+KYAIFF +K RS+ADEIA GDFDGDMYWVSRN Q Y Sbjct: 730 EKLVPVVGNAKYAIFFSSKGPRSVADEIAGGDFDGDMYWVSRNSQLLEY 778 >ref|XP_003517644.1| PREDICTED: probable RNA-dependent RNA polymerase 5-like [Glycine max] Length = 953 Score = 578 bits (1490), Expect = e-162 Identities = 318/610 (52%), Positives = 412/610 (67%), Gaps = 19/610 (3%) Frame = -2 Query: 2585 SSRMNLNSARHENPGISNKPILESLEKLEFRKAFLILSYCGKTKLEDVVSVDLIQRLQNM 2406 S+R + R P S+ +L +L +LEFRKAFLILSY G+ LE+ ++ I+ L+++ Sbjct: 70 STRQQTSPTRPPRPTPSS--LLHALGELEFRKAFLILSYIGRESLENCITDAKIRSLKDL 127 Query: 2405 PMRAFESELWRVLGSKCIDEIDRRKNVDWDSGRTYLYHCYVDQDATYRFKGPYLHKQRTH 2226 PM FE +W G KCI + R+ V+W+SGRT++Y C+V D RFKGP L RTH Sbjct: 128 PMAKFEKTIWEDFGEKCIYDQSDRQLVNWNSGRTHVYQCFVFPDGNLRFKGPILQSTRTH 187 Query: 2225 LQRVLGDENVLLVKFAD---------HSSE----YCTIAKDGILVGLRHFCFFVFKDGGK 2085 LQ+ LGD+NVLLVKFA+ H+ E Y K+GI VGLR + FFVFKDGG Sbjct: 188 LQKTLGDDNVLLVKFAEDGSGKNFRTHAEEANALYGKFGKEGIRVGLRLYRFFVFKDGGN 247 Query: 2084 EEKKKNPTSSAVKCYFVCKEANAFADMRGPY--TSFTNHEARCLFMHVRTV-SSVVKYMA 1914 EEK+K+PTSS VKCYFV ++ AD Y ++ T EAR LFMH + ++ KYMA Sbjct: 248 EEKQKDPTSSTVKCYFVRMQSGCSADEGADYILSNKTVSEARTLFMHAHMLLPNLNKYMA 307 Query: 1913 RFSLILSKTVQLDIDLASVNIERISDIPCLDPDGNSICNEEGEPLILTDGTGFISEDLAA 1734 RFSLILSKT++L+IDL +V++++I D C D +GN + + E +P ILTDGTGFIS DLA Sbjct: 308 RFSLILSKTLKLNIDLTTVSVQKIPDEYCKDANGNIMVDNE-KPRILTDGTGFISRDLAL 366 Query: 1733 NCPENIYK---LKFMCQRESEMVLDCGENQGESSVLTQQKYHLREPPLLIQSRLFHNGIA 1563 CP N+YK L+ C +E +++ + Q H EPPLLIQ RLFH G A Sbjct: 367 LCPNNVYKGSNLENNCIQEINNLVELEDMSNAMGEAEQLSTH--EPPLLIQCRLFHMGHA 424 Query: 1562 VKGTFLVNKKLPPKTIQIRPSMIKVEADPKLLGTLSANSLEIVSTSSKPRKTSYLSRYLI 1383 +KGT LVN+KLPP+TIQ+RPSMIKVE DP + S NSLE+V+TS+KP++ YLS++LI Sbjct: 425 IKGTLLVNRKLPPRTIQVRPSMIKVEKDPSV-HMQSINSLEVVTTSNKPKR-GYLSKHLI 482 Query: 1382 ALLNYGGVPTEFFMELLVNALEDARQVHSNKRAALLVSLRYGEMDDFLVPRMILSGIPLY 1203 ALL++GGVP EFFM+LL + +EDA V+SNKR+AL S+ GE D++ MIL GIPL Sbjct: 483 ALLSFGGVPNEFFMDLLRSNMEDANHVYSNKRSALRASINCGEKDEYNAAEMILCGIPLD 542 Query: 1202 EPYLKTRLSVIMNEEXXXXXXXXLPITECYYLMGTADPTGRLKGDEVCIILDHGQVTGEV 1023 EP+LK LS EE L + +C+YLMGT DPTG LK ++VCII ++ Q+ G+V Sbjct: 543 EPFLKHHLSRFAREEKKKLRGGKLYMPDCFYLMGTVDPTGHLKKNQVCIIHENSQIVGDV 602 Query: 1022 LVYRHPGLHFGDIHVLTATIVRGLEEIVGNSKYAIFFPTKRCRSLADEIANGDFDGDMYW 843 LVYR+PGLHFGDIH + AT V+ LE VG+SKY IFFP RS+ADEIA GDFDGD YW Sbjct: 603 LVYRNPGLHFGDIHKMDATYVKELESYVGHSKYGIFFPRVGTRSVADEIAGGDFDGDTYW 662 Query: 842 VSRNPQACPY 813 VS +PQ Y Sbjct: 663 VSNHPQLLQY 672