BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00016354
         (718 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E sub...   288   1e-75
ref|XP_002303925.1| RNA polymerase IV subunit [Populus trichocar...   278   6e-73
ref|XP_002513060.1| DNA-directed RNA polymerase, putative [Ricin...   271   1e-70
ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E sub...   268   8e-70
gb|EEE56320.1| hypothetical protein OsJ_05410 [Oryza sativa Japo...   261   1e-67

>ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E subunit 1 [Vitis vinifera]
          Length = 1830

 Score =  288 bits (736), Expect = 1e-75
 Identities = 142/233 (60%), Positives = 171/233 (73%)
 Frame = -2

Query: 699 MEENNLVPPIVDARITDIRFSVATDDEXXXXXXXXXXXSHPGQLTNPFLGLPLESGKCES 520
           MEE++    I+D  I+ IRF +AT  E           SH  QLTNPFLGLPLE GKCES
Sbjct: 1   MEEDSST--ILDGEISGIRFGLATRQEICIASVSDCPISHASQLTNPFLGLPLEFGKCES 58

Query: 519 CGTAEPGKCDGHFGYIEFPIKIYHPSHVSELKRLLSTVCLKCLRLKRTKIRQNVGSDRPS 340
           CGTAEPG+C+GHFGYIE PI IYHP HVSELKR+LS +CLKCL+++++K+  N G     
Sbjct: 59  CGTAEPGQCEGHFGYIELPIPIYHPGHVSELKRMLSLLCLKCLKIRKSKVTNN-GITEQL 117

Query: 339 NIPCSYCPDIPQILVNEFKTTDGVVFLELKVVTRSIPHNGFWNFLDKYGYRYGEGKSRIL 160
             PC  C D PQ+ V EF+ T+G  FLELK+ +RS P +GFW+FL +YGYRYG   SRIL
Sbjct: 118 LAPC--CQDSPQVSVREFRPTEGACFLELKIPSRSRPKDGFWDFLARYGYRYGHNLSRIL 175

Query: 159 LPCEVLEILNKFSEDTRKKLSGKGYFMQEGYILQKLPVPPNCLSIPEISDGIS 1
           LP EV+EIL +  EDTRKKL  KGYF Q+GYILQ LPVPPNCLS+P+ISDG+S
Sbjct: 176 LPSEVMEILRRIPEDTRKKLVRKGYFPQDGYILQYLPVPPNCLSVPDISDGVS 228


>ref|XP_002303925.1| RNA polymerase IV subunit [Populus trichocarpa]
           gi|222841357|gb|EEE78904.1| RNA polymerase IV subunit
           [Populus trichocarpa]
          Length = 924

 Score =  278 bits (712), Expect = 6e-73
 Identities = 137/233 (58%), Positives = 170/233 (72%)
 Frame = -2

Query: 699 MEENNLVPPIVDARITDIRFSVATDDEXXXXXXXXXXXSHPGQLTNPFLGLPLESGKCES 520
           M+EN+    I D  IT IRF +AT  E           SH  QLTNPFLGLPLE GKCES
Sbjct: 1   MDENSQ-SSIFDGEITGIRFGLATQKEICTASISDCPISHSSQLTNPFLGLPLEFGKCES 59

Query: 519 CGTAEPGKCDGHFGYIEFPIKIYHPSHVSELKRLLSTVCLKCLRLKRTKIRQNVGSDRPS 340
           CGT+EPGKC+GHFG+I  PI IYHPSH+SELKR+LS +CLKCL+LKR KI+  + S+  +
Sbjct: 60  CGTSEPGKCEGHFGFIHLPIPIYHPSHISELKRMLSLICLKCLKLKRNKIQ--IKSNGVA 117

Query: 339 NIPCSYCPDIPQILVNEFKTTDGVVFLELKVVTRSIPHNGFWNFLDKYGYRYGEGKSRIL 160
               S C +  QI + E K TDG  FLELK+ +RS   +G WNFL++YG+RYG+  +R L
Sbjct: 118 ERLLSCCEECAQISIREVKNTDGACFLELKLPSRSRLRDGCWNFLERYGFRYGDDFTRPL 177

Query: 159 LPCEVLEILNKFSEDTRKKLSGKGYFMQEGYILQKLPVPPNCLSIPEISDGIS 1
           LPCEV++IL +   +TRKKLSGKGYF Q+GYILQ+LPVPPNCLS+P +SDGI+
Sbjct: 178 LPCEVMQILKRIPAETRKKLSGKGYFPQDGYILQQLPVPPNCLSVPVVSDGIT 230


>ref|XP_002513060.1| DNA-directed RNA polymerase, putative [Ricinus communis]
           gi|223548071|gb|EEF49563.1| DNA-directed RNA polymerase,
           putative [Ricinus communis]
          Length = 991

 Score =  271 bits (692), Expect = 1e-70
 Identities = 129/232 (55%), Positives = 167/232 (71%)
 Frame = -2

Query: 696 EENNLVPPIVDARITDIRFSVATDDEXXXXXXXXXXXSHPGQLTNPFLGLPLESGKCESC 517
           ++ N     ++  +  I+F +AT  E           SH  QLTNPFLGLPLE GKCESC
Sbjct: 3   DKENTQSSFLEGEVVGIKFGLATYKEISAASVSDCPISHSSQLTNPFLGLPLEFGKCESC 62

Query: 516 GTAEPGKCDGHFGYIEFPIKIYHPSHVSELKRLLSTVCLKCLRLKRTKIRQNVGSDRPSN 337
           GT+EPGKC+GHFGYIE PI IYHPSHVSELKR+LS +CLKCL+LK  KI+ +  ++R   
Sbjct: 63  GTSEPGKCEGHFGYIELPIPIYHPSHVSELKRMLSLLCLKCLKLKTNKIKSSGVAERLF- 121

Query: 336 IPCSYCPDIPQILVNEFKTTDGVVFLELKVVTRSIPHNGFWNFLDKYGYRYGEGKSRILL 157
              S C +  QI + E KTTDG   L+LK+ +R    +GFWNFL++YG+RYG+  +R LL
Sbjct: 122 ---SCCEEAAQISIKEVKTTDGAYILQLKLPSRMRLRDGFWNFLERYGFRYGDDITRTLL 178

Query: 156 PCEVLEILNKFSEDTRKKLSGKGYFMQEGYILQKLPVPPNCLSIPEISDGIS 1
           PCEVLE+L +  +DTRKKL+ KGYF Q+GYI++ +PVPPNCLS+P+ISDG+S
Sbjct: 179 PCEVLEMLRRIPQDTRKKLAKKGYFPQDGYIMRYVPVPPNCLSVPDISDGVS 230


>ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Cucumis
           sativus]
          Length = 1959

 Score =  268 bits (685), Expect = 8e-70
 Identities = 127/233 (54%), Positives = 166/233 (71%)
 Frame = -2

Query: 699 MEENNLVPPIVDARITDIRFSVATDDEXXXXXXXXXXXSHPGQLTNPFLGLPLESGKCES 520
           MEE      I+DA I  IRFS+A   E           +H  QL+NPFLGLP+E GKCES
Sbjct: 1   MEEAPSCSSILDAEIVGIRFSLANGQEICIAAISDCPITHASQLSNPFLGLPIEFGKCES 60

Query: 519 CGTAEPGKCDGHFGYIEFPIKIYHPSHVSELKRLLSTVCLKCLRLKRTKIRQNVGSDRPS 340
           CGT+EPGKC+GHFGYIE PI IYHP+H++ELK++LS +CLKCL++K+TK   N+G     
Sbjct: 61  CGTSEPGKCEGHFGYIELPIPIYHPNHITELKKMLSLLCLKCLKMKKTK---NIGF--AE 115

Query: 339 NIPCSYCPDIPQILVNEFKTTDGVVFLELKVVTRSIPHNGFWNFLDKYGYRYGEGKSRIL 160
            +  S C D  Q+ + E K  DG  +L+LKV +R+     FW+FL++YG+RYG+  +R L
Sbjct: 116 RLLSSCCEDASQVTIREAKKADGASYLQLKVPSRTSLQERFWDFLERYGFRYGDNFTRTL 175

Query: 159 LPCEVLEILNKFSEDTRKKLSGKGYFMQEGYILQKLPVPPNCLSIPEISDGIS 1
           LPCEV E+L K   +TRKKL+G+GY+ Q+GYILQ LPVPPNCLS+PEISDG++
Sbjct: 176 LPCEVKEMLKKIPNETRKKLAGRGYYPQDGYILQYLPVPPNCLSVPEISDGVT 228


>gb|EEE56320.1| hypothetical protein OsJ_05410 [Oryza sativa Japonica Group]
          Length = 2017

 Score =  261 bits (667), Expect = 1e-67
 Identities = 121/234 (51%), Positives = 158/234 (67%), Gaps = 1/234 (0%)
 Frame = -2

Query: 699 MEENNLVPPIVDARITDIRFSVATDDEXXXXXXXXXXXSHPGQLTNPFLGLPLESGKCES 520
           MEE+    P+ +  I  I+ S++T+DE           +HP QL NPFLGLPLE+GKCES
Sbjct: 1   MEEDQSAIPVAEGAIKSIKLSLSTEDEIRTYSINDCPVTHPSQLGNPFLGLPLETGKCES 60

Query: 519 CGTAEPGKCDGHFGYIEFPIKIYHPSHVSELKRLLSTVCLKCLRLKRTKIRQNVGSDRPS 340
           CG +E GKC+GHFGYIE P+ IYHP HV+EL+++L+ VCLKCLR+K+ K++Q  G D  S
Sbjct: 61  CGASENGKCEGHFGYIELPVPIYHPCHVTELRQILNVVCLKCLRVKKGKVKQTEGKDNTS 120

Query: 339 NIPCSYCPDIPQILVNEFKTTDGVVFLELKVVTRSIPHNGFWNFLDKYGYRY-GEGKSRI 163
            + C YC D+P + + E KT DG   LELK+  R     G WNFLDKYG+ + G    R 
Sbjct: 121 ALSCYYCRDLPALSLKEIKTADGAFRLELKMPPRKFMTEGSWNFLDKYGFHHGGTSHCRT 180

Query: 162 LLPCEVLEILNKFSEDTRKKLSGKGYFMQEGYILQKLPVPPNCLSIPEISDGIS 1
           LLP E L IL K  E+T++KL+ +GY  Q GY+++ LPVPPNCL IPE +DG S
Sbjct: 181 LLPEEALNILKKIPEETKRKLAARGYIAQSGYVMKYLPVPPNCLYIPEFTDGQS 234