BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis21_contig00016278
         (779 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI35920.3| unnamed protein product [Vitis vinifera]              132   6e-29
ref|XP_002278228.1| PREDICTED: DNA-directed RNA polymerase I sub...   132   6e-29
gb|AFK41205.1| unknown [Lotus japonicus]                              123   5e-26
ref|XP_003546428.1| PREDICTED: DNA-directed RNA polymerase I sub...   119   7e-25
ref|XP_002884998.1| DNA binding protein [Arabidopsis lyrata subs...   115   8e-24

>emb|CBI35920.3| unnamed protein product [Vitis vinifera]
          Length = 391

 Score =  132 bits (333), Expect = 6e-29
 Identities = 69/122 (56%), Positives = 90/122 (73%), Gaps = 1/122 (0%)
 Frame = -2

Query: 778 ICSYITHLIKFKDQRSANSASTKNHYIPGILNRRFSTTFA-DSDSNQTRNFPSIEKRNFL 602
           I SYI HL+K+KD+ S +++S K+H IPGILN++FS+ FA DSDS +       EK++ L
Sbjct: 267 IFSYINHLLKYKDRNSMDASSAKHHKIPGILNQKFSSMFALDSDSRRLTE----EKKDLL 322

Query: 601 ISYVLVLTLIVDGYRTDMYDIARDLKISVGTVREHYTNLGCKLKQENKVVYATLPVPLEF 422
           ISYVLVLTL  D +RTD  DIARDL++S   +R H+ +LGCKL  +NKV  ATLPVPL F
Sbjct: 323 ISYVLVLTLYADEFRTDPSDIARDLRMSAVKLRAHFEHLGCKLVSQNKVTMATLPVPLTF 382

Query: 421 PK 416
           P+
Sbjct: 383 PR 384


>ref|XP_002278228.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA49 [Vitis
           vinifera]
          Length = 421

 Score =  132 bits (333), Expect = 6e-29
 Identities = 69/122 (56%), Positives = 90/122 (73%), Gaps = 1/122 (0%)
 Frame = -2

Query: 778 ICSYITHLIKFKDQRSANSASTKNHYIPGILNRRFSTTFA-DSDSNQTRNFPSIEKRNFL 602
           I SYI HL+K+KD+ S +++S K+H IPGILN++FS+ FA DSDS +       EK++ L
Sbjct: 297 IFSYINHLLKYKDRNSMDASSAKHHKIPGILNQKFSSMFALDSDSRRLTE----EKKDLL 352

Query: 601 ISYVLVLTLIVDGYRTDMYDIARDLKISVGTVREHYTNLGCKLKQENKVVYATLPVPLEF 422
           ISYVLVLTL  D +RTD  DIARDL++S   +R H+ +LGCKL  +NKV  ATLPVPL F
Sbjct: 353 ISYVLVLTLYADEFRTDPSDIARDLRMSAVKLRAHFEHLGCKLVSQNKVTMATLPVPLTF 412

Query: 421 PK 416
           P+
Sbjct: 413 PR 414


>gb|AFK41205.1| unknown [Lotus japonicus]
          Length = 347

 Score =  123 bits (308), Expect = 5e-26
 Identities = 64/121 (52%), Positives = 86/121 (71%), Gaps = 1/121 (0%)
 Frame = -2

Query: 778 ICSYITHLIKFKDQRSANSAST-KNHYIPGILNRRFSTTFADSDSNQTRNFPSIEKRNFL 602
           I SY+ HLIKFKDQR+    S+ K+H IP IL  +FS+ F  ++S +  N    ++ N L
Sbjct: 222 IFSYLNHLIKFKDQRTMQGVSSAKSHKIPPILRYKFSSMFGATESRRLPN----DELNLL 277

Query: 601 ISYVLVLTLIVDGYRTDMYDIARDLKISVGTVREHYTNLGCKLKQENKVVYATLPVPLEF 422
           I YVLVLTL  D +RTD  DI++DL++SV  VR+HY++LGCK   +NK+ YATLPVPL+F
Sbjct: 278 ICYVLVLTLFSDEFRTDYTDISKDLRMSVLLVRQHYSDLGCKFLSQNKISYATLPVPLKF 337

Query: 421 P 419
           P
Sbjct: 338 P 338


>ref|XP_003546428.1| PREDICTED: DNA-directed RNA polymerase I subunit rpa49-like
           [Glycine max]
          Length = 424

 Score =  119 bits (298), Expect = 7e-25
 Identities = 64/121 (52%), Positives = 82/121 (67%)
 Frame = -2

Query: 778 ICSYITHLIKFKDQRSANSASTKNHYIPGILNRRFSTTFADSDSNQTRNFPSIEKRNFLI 599
           I SYI HLIKFKDQ S +  S K H IP IL  +FS  FA S+S   +  P  EK + LI
Sbjct: 300 IFSYINHLIKFKDQHSFDVLSAKGHKIPNILRHKFSNMFAVSES---KRLPP-EKISLLI 355

Query: 598 SYVLVLTLIVDGYRTDMYDIARDLKISVGTVREHYTNLGCKLKQENKVVYATLPVPLEFP 419
            YVLVLTL  D +RTD  DIA+DL +++  VR+ Y +LGCK+ ++  + YATLPVPL+FP
Sbjct: 356 CYVLVLTLFSDEFRTDYTDIAKDLSMNILPVRQLYEHLGCKISRQKNIFYATLPVPLKFP 415

Query: 418 K 416
           +
Sbjct: 416 E 416


>ref|XP_002884998.1| DNA binding protein [Arabidopsis lyrata subsp. lyrata]
           gi|297330838|gb|EFH61257.1| DNA binding protein
           [Arabidopsis lyrata subsp. lyrata]
          Length = 443

 Score =  115 bits (289), Expect = 8e-24
 Identities = 59/120 (49%), Positives = 80/120 (66%), Gaps = 1/120 (0%)
 Frame = -2

Query: 766 ITHLIKFKDQRSANSA-STKNHYIPGILNRRFSTTFADSDSNQTRNFPSIEKRNFLISYV 590
           +THL+KFKD+ S N   S KNH +P I  R+F + F DS+S +      ++K N LISYV
Sbjct: 321 LTHLVKFKDRNSMNGFDSAKNHKMPDIFRRKFQSMFKDSESERI----PVDKANLLISYV 376

Query: 589 LVLTLIVDGYRTDMYDIARDLKISVGTVREHYTNLGCKLKQENKVVYATLPVPLEFPKPN 410
           LVL+L VD ++TD  DIA+DL+IS   +R+H+  LGCK  ++N    ATLP PL FP+ N
Sbjct: 377 LVLSLHVDNFKTDPEDIAKDLRISTVELRKHFQQLGCKFVKQNSTWVATLPTPLNFPEVN 436